mRNA_M-pyrifera_M_contig733.17385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig733.17385.1
Unique NamemRNA_M-pyrifera_M_contig733.17385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig733.17385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig733contigM-pyrifera_M_contig733:32911..33654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size744
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig733.17385.1prot_M-pyrifera_M_contig733.17385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig733 32955..33437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.9865994-UTR-M-pyrifera_M_contig733:32910..329541622816629.9865994-UTR-M-pyrifera_M_contig733:32910..32954Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig733 32911..32954 +
1692278087.1702266-UTR-M-pyrifera_M_contig733:32910..329541692278087.1702266-UTR-M-pyrifera_M_contig733:32910..32954Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig733 32911..32954 +
1622816630.0091407-UTR-M-pyrifera_M_contig733:33437..336541622816630.0091407-UTR-M-pyrifera_M_contig733:33437..33654Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig733 33438..33654 +
1692278087.1974697-UTR-M-pyrifera_M_contig733:33437..336541692278087.1974697-UTR-M-pyrifera_M_contig733:33437..33654Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig733 33438..33654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.9978583-CDS-M-pyrifera_M_contig733:32954..334371622816629.9978583-CDS-M-pyrifera_M_contig733:32954..33437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig733 32955..33437 +
1692278087.1857164-CDS-M-pyrifera_M_contig733:32954..334371692278087.1857164-CDS-M-pyrifera_M_contig733:32954..33437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig733 32955..33437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig733.17385.1

>prot_M-pyrifera_M_contig733.17385.1 ID=prot_M-pyrifera_M_contig733.17385.1|Name=mRNA_M-pyrifera_M_contig733.17385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MENQTRRVVFLAPTPLNTPGLPYNSVVCPGPSGFGPRNQQKITNRSEHTA
ARLRTIDASRTWASPTLLSVHLVGWVVYRSRQHISKRTGVDDVALHPSRR
LGCVPFEAIHFEKTKEKRFFGSWHKPAPPAEKFCTEQPLTPSVPRFRQQR
AHQHPPTFRT*
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mRNA from alignment at M-pyrifera_M_contig733:32911..33654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig733.17385.1 ID=mRNA_M-pyrifera_M_contig733.17385.1|Name=mRNA_M-pyrifera_M_contig733.17385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig733:32911..33654+ (Macrocystis pyrifera P11B4 male)
GTTCACTTGGCGTTATTTTGTATACCCTGTCAATCAATAGGAAGATGGAA
AACCAAACGCGGCGTGTCGTTTTCCTTGCCCCCACCCCCCTGAATACTCC
TGGTCTCCCCTACAACTCCGTGGTGTGCCCAGGCCCATCAGGCTTTGGCC
CTCGAAACCAGCAAAAGATAACGAACAGAAGCGAACACACGGCAGCCCGG
CTCAGAACGATTGACGCGAGCAGAACATGGGCGTCGCCGACGTTGCTCTC
CGTCCATCTCGTCGGCTGGGTTGTGTACCGTTCGAGGCAACACATTTCGA
AAAGAACGGGCGTCGATGACGTTGCTCTCCATCCATCTCGTCGACTGGGT
TGTGTACCGTTCGAGGCAATACATTTCGAAAAGACGAAGGAAAAGCGCTT
TTTCGGGAGCTGGCACAAACCCGCACCACCAGCCGAAAAGTTCTGCACAG
AACAACCTCTGACCCCGTCCGTCCCACGCTTTCGCCAGCAGCGCGCCCAC
CAGCACCCACCAACGTTTCGCACTTGAATGGGTGCGTGTCTTTTTTTTGG
AACGATCGGCCGGCCGGGAGCTCTTCGCCAAAAAACAATCAGTTTTTTTT
TTTCGGTCCTTTCATATAGCGGTTGGGTTTGGATTCTACATATCGGCTAC
CGGGAGCAAGCCAGCCACTGGTGGTATCCTGCATCTTTCTTTTATTCCAG
CCTAAACGCCATCGGTGAAAAAACGAGGACCAACGCCTACCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig733:32911..33654+

>mRNA_M-pyrifera_M_contig733.17385.1 ID=mRNA_M-pyrifera_M_contig733.17385.1|Name=mRNA_M-pyrifera_M_contig733.17385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig733:32911..33654+ (Macrocystis pyrifera P11B4 male)
ATGGAAAACCAAACGCGGCGTGTCGTTTTCCTTGCCCCCACCCCCCTGAA
TACTCCTGGTCTCCCCTACAACTCCGTGGTGTGCCCAGGCCCATCAGGCT
TTGGCCCTCGAAACCAGCAAAAGATAACGAACAGAAGCGAACACACGGCA
GCCCGGCTCAGAACGATTGACGCGAGCAGAACATGGGCGTCGCCGACGTT
GCTCTCCGTCCATCTCGTCGGCTGGGTTGTGTACCGTTCGAGGCAACACA
TTTCGAAAAGAACGGGCGTCGATGACGTTGCTCTCCATCCATCTCGTCGA
CTGGGTTGTGTACCGTTCGAGGCAATACATTTCGAAAAGACGAAGGAAAA
GCGCTTTTTCGGGAGCTGGCACAAACCCGCACCACCAGCCGAAAAGTTCT
GCACAGAACAACCTCTGACCCCGTCCGTCCCACGCTTTCGCCAGCAGCGC
GCCCACCAGCACCCACCAACGTTTCGCACTTGAATGGAAAACCAAACGCG
GCGTGTCGTTTTCCTTGCCCCCACCCCCCTGAATACTCCTGGTCTCCCCT
ACAACTCCGTGGTGTGCCCAGGCCCATCAGGCTTTGGCCCTCGAAACCAG
CAAAAGATAACGAACAGAAGCGAACACACGGCAGCCCGGCTCAGAACGAT
TGACGCGAGCAGAACATGGGCGTCGCCGACGTTGCTCTCCGTCCATCTCG
TCGGCTGGGTTGTGTACCGTTCGAGGCAACACATTTCGAAAAGAACGGGC
GTCGATGACGTTGCTCTCCATCCATCTCGTCGACTGGGTTGTGTACCGTT
CGAGGCAATACATTTCGAAAAGACGAAGGAAAAGCGCTTTTTCGGGAGCT
GGCACAAACCCGCACCACCAGCCGAAAAGTTCTGCACAGAACAACCTCTG
ACCCCGTCCGTCCCACGCTTTCGCCAGCAGCGCGCCCACCAGCACCCACC
AACGTTTCGCACTTGA
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