mRNA_M-pyrifera_M_contig7329.17383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7329.17383.1
Unique NamemRNA_M-pyrifera_M_contig7329.17383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7329.17383.1 vs. uniprot
Match: D7FMY7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.530e-24
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   28 SYHFHVPLM-QAAASKNSRTRIACLSELSRCIDVDGAASALGKKGLKELAKHVDSDQAEVRSAALDAV 228
            SY  + PL+ QA ASKNSRTRIACL ELSRCI  DG ASALGKKGLKELAKHVDSDQAEVRSAALDAV
Sbjct: 1413 SYAKYSPLLLQATASKNSRTRIACLLELSRCIGADGPASALGKKGLKELAKHVDSDQAEVRSAALDAV 1480
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BLAST of mRNA_M-pyrifera_M_contig7329.17383.1 vs. uniprot
Match: W7TIC8_9STRA (Microtubule associated protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIC8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-11
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 VLCILLPDSSYHFHVPLMQAAASKNSRTRIACLSELSRCIDVDGAASALGKKGLKELAKHVDSDQAEVRSAALDAV 228
            ++C L P S Y  +  L+ A  +KN R+R ACL E  R +D  G ASALGK+GL+E+ K++D+ + EVRSAAL+ +
Sbjct:    3 LVCDLYPFSKYGPY--LVAALGTKNLRSRAACLDECRRLLDY-GPASALGKRGLREIGKYLDAREPEVRSAALEVI 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7329.17383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMY7_ECTSI8.530e-2483.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIC8_9STRA1.860e-1147.37Microtubule associated protein n=1 Tax=Nannochloro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7329contigM-pyrifera_M_contig7329:2421..3554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog2880.D7FMY7
Preferred nameCKAP5
KEGG koko:K11664,ko:K16803
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000086,GO:0000132,GO:0000212,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000578,GO:0000741,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000902,GO:0000904,GO:0000910,GO:0000911,GO:0000919,GO:0000922,GO:0000940,GO:0000942,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005911,GO:0005938,GO:0006403,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007019,GO:0007020,GO:0007029,GO:0007030,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007098,GO:0007143,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007338,GO:0007344,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007399,GO:0007405,GO:0007409,GO:0007411,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008298,GO:0008356,GO:0008358,GO:0008360,GO:0008595,GO:0008608,GO:0009506,GO:0009524,GO:0009566,GO:0009574,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009832,GO:0009880,GO:0009920,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010256,GO:0010389,GO:0010564,GO:0010638,GO:0010968,GO:0010970,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016325,GO:0016740,GO:0017145,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030010,GO:0030030,GO:0030031,GO:0030054,GO:0030139,GO:0030154,GO:0030182,GO:0030705,GO:0030863,GO:0030951,GO:0030952,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031175,GO:0031334,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032886,GO:0032984,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0035282,GO:0035371,GO:0036445,GO:0040001,GO:0040011,GO:0042221,GO:0042330,GO:0042546,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044454,GO:0044464,GO:0044703,GO:0044732,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0045165,GO:0045184,GO:0045196,GO:0045450,GO:0046785,GO:0046907,GO:0048103,GO:0048284,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048522,GO:0048599,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051010,GO:0051128,GO:0051130,GO:0051179,GO:0051225,GO:0051231,GO:0051234,GO:0051236,GO:0051258,GO:0051261,GO:0051276,GO:0051293,GO:0051294,GO:0051298,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0055044,GO:0055057,GO:0055059,GO:0060271,GO:0060810,GO:0060811,GO:0061351,GO:0061564,GO:0061640,GO:0061863,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070199,GO:0070462,GO:0070507,GO:0070727,GO:0070840,GO:0070850,GO:0070925,GO:0071459,GO:0071554,GO:0071669,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071963,GO:0072089,GO:0072594,GO:0072686,GO:0072687,GO:0090063,GO:0090307,GO:0097427,GO:0097435,GO:0097485,GO:0097708,GO:0097711,GO:0098687,GO:0098722,GO:0098813,GO:0098840,GO:0099070,GO:0099080,GO:0099081,GO:0099111,GO:0099118,GO:0099512,GO:0099513,GO:0099568,GO:0120031,GO:0120036,GO:0120039,GO:0140013,GO:0140014,GO:0140056,GO:0140096,GO:0140210,GO:1901987,GO:1901990,GO:1902410,GO:1902749,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047,GO:1904511,GO:1990498,GO:1990752
EggNOG free text desc.microtubule plus end polymerase
EggNOG OGsKOG1820@1,KOG1820@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-25_002810.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.9346352-CDS-M-pyrifera_M_contig7329:2420..25961622816629.9346352-CDS-M-pyrifera_M_contig7329:2420..2596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7329 2421..2596 +
1692278087.1330135-CDS-M-pyrifera_M_contig7329:2420..25961692278087.1330135-CDS-M-pyrifera_M_contig7329:2420..2596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7329 2421..2596 +
1622816629.9473205-CDS-M-pyrifera_M_contig7329:3502..35541622816629.9473205-CDS-M-pyrifera_M_contig7329:3502..3554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7329 3503..3554 +
1692278087.151904-CDS-M-pyrifera_M_contig7329:3502..35541692278087.151904-CDS-M-pyrifera_M_contig7329:3502..3554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7329 3503..3554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7329.17383.1prot_M-pyrifera_M_contig7329.17383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7329 2421..3554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7329.17383.1

>prot_M-pyrifera_M_contig7329.17383.1 ID=prot_M-pyrifera_M_contig7329.17383.1|Name=mRNA_M-pyrifera_M_contig7329.17383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
VLCILLPDSSYHFHVPLMQAAASKNSRTRIACLSELSRCIDVDGAASALG
KKGLKELAKHVDSDQAEVRSAALDAV
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mRNA from alignment at M-pyrifera_M_contig7329:2421..3554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7329.17383.1 ID=mRNA_M-pyrifera_M_contig7329.17383.1|Name=mRNA_M-pyrifera_M_contig7329.17383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig7329:2421..3554+ (Macrocystis pyrifera P11B4 male)
GTGCTTTGTATTTTGTTGCCTGATTCATCGTATCACTTTCACGTGCCATT
GATGCAGGCGGCTGCATCTAAGAACAGTCGGACCCGCATTGCCTGCCTGT
CGGAGCTCTCACGCTGTATCGATGTCGACGGAGCGGCGAGCGCGCTCGGC
AAGAAGGGCCTCAAGGAGCTCGCCAAGTGAGTCCCGTAAAACACGTAACT
TCACGAAATAATGCACATATTGTCCACGAAGTAAGTTTTATACCAGGAAT
AATGTTTTTTTTTGTGTTATTGATACGAGCTGGTTCCAGCAACAAATATA
TCCTTCCACCTTCGGGCCTTTAATAGACGACTGCGCTGAGTCAGTCGGCA
CTAAGCATATCCACGTGACCGCATCAACGAGGAGAACACGTTGGTGAAGC
TTGGTTTTGCGTGCGAGCCGTAGCTCGCGAGGTATTGGAATTTTGTTGCT
TGGGGATGCGTTGTTGCACACCTGGTACGCAGGGATTTGAGGTGTTGATA
GGAAATCTATATAGTCAGCATTCAAGCCATACATCCGTCAATAAATTATA
TATTGAACGTGTTGATATAATCGCATCAACTAGACGAAAGCGCCCGTCAC
ACTGGTGTGTTTTGCAAGCCGCTAGTGGCTATTACCATGAACGCCTGCCA
GAGTACTACCGGTAGAACAATGTATTGAGAAAATTTGGTCAACTTTGAGG
AGAAATATTACTCCCTCGGCAATCTATTTTTGCGCCATGGGTTTTAAGAG
TTGAGAAACAACACTTGGCACGGTTGTTCTTCATGGCAGTACGAAAAAAG
TGAGGCCTGCCCTTTTTTGTGTGCGGTATAGCCGAGAAATTGCCGGAAAA
TTCCTAAAAATCGTAAAATTGCGCCCTAAGAACGAAAAAATAAATTCATG
AGGCCCGTCATCAGTTTTTTTTTCACATTGCCATAAAGAACAACCATGGC
AGTTGTTTTTCAAATTTCATGAATCGTGGTGCAAAGTTTCAAAGGGAAGG
TGTTCCGCTTGTCGCTGGAACCGGTTCGTATGATATGTCAAACTTCACAT
CGAACACCTTTTTTATGTCCCTACGATCCCAGGCATGTGGACTCTGATCA
AGCAGAGGTGCGCTCCGCCGCATTGGATGCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7329:2421..3554+

>mRNA_M-pyrifera_M_contig7329.17383.1 ID=mRNA_M-pyrifera_M_contig7329.17383.1|Name=mRNA_M-pyrifera_M_contig7329.17383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig7329:2421..3554+ (Macrocystis pyrifera P11B4 male)
GTGCTTTGTATTTTGTTGCCTGATTCATCGTATCACTTTCACGTGCCATT
GATGCAGGCGGCTGCATCTAAGAACAGTCGGACCCGCATTGCCTGCCTGT
CGGAGCTCTCACGCTGTATCGATGTCGACGGAGCGGCGAGCGCGCTCGGC
AAGAAGGGCCTCAAGGAGCTCGCCAAGTGCTTTGTATTTTGTTGCCTGAT
TCATCGTATCACTTTCACGTGCCATTGATGCAGGCGGCTGCATCTAAGAA
CAGTCGGACCCGCATTGCCTGCCTGTCGGAGCTCTCACGCTGTATCGATG
TCGACGGAGCGGCGAGCGCGCTCGGCAAGAAGGGCCTCAAGGAGCTCGCC
AAGCATGTGGACTCTGATCAAGCAGAGGTGCGCTCCGCCGCATTGGATGC
GGTGGCATGTGGACTCTGATCAAGCAGAGGTGCGCTCCGCCGCATTGGAT
GCGGTG
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