mRNA_M-pyrifera_M_contig73280.17382.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73280.17382.1
Unique NamemRNA_M-pyrifera_M_contig73280.17382.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73280.17382.1 vs. uniprot
Match: A0A2E7KFZ2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFZ2_9PLAN)

HSP 1 Score: 418 bits (1075), Expect = 3.160e-146
Identity = 207/215 (96.28%), Postives = 211/215 (98.14%), Query Frame = 1 
Query:    1 MKNLFERQFVPLAIAVLAISSITVVCLFLLELFSAPQARYGALTLNFKDYSLINVDHQNTSELNTKEQPHRFRVFNIYDSNNRLTDNLCFERKFLFSGGRLIDWNEYKAIPISLPDSERFLNQRLVLHDRFFPKPSPGNWPEFTISASTGETPVISQLSVSEVKTVATYLVYLYASSDLLYAAYGADGTLIQIAHRTRRNGGFYHPQRFPESDNP 645
            MKNLFERQFVPLAIAVLAISSITVVCLFLLELFSAPQARYGALTLNFKDYSLINVDHQNTSELNTKEQPHRFRVFNIYDSNNRLTDNLCFERKFLFSGGRLIDWNEYKAIPISLPD+ERFLNQRLV+ DRFFPKPSPGNWPEFTISASTGETPVISQLSVSE+KTVATY VYLYASSDLLYAAYG DGTLIQIAHRT+ NGGFYHPQRFPESDNP
Sbjct:    1 MKNLFERQFVPLAIAVLAISSITVVCLFLLELFSAPQARYGALTLNFKDYSLINVDHQNTSELNTKEQPHRFRVFNIYDSNNRLTDNLCFERKFLFSGGRLIDWNEYKAIPISLPDNERFLNQRLVIRDRFFPKPSPGNWPEFTISASTGETPVISQLSVSELKTVATYFVYLYASSDLLYAAYGTDGTLIQIAHRTQLNGGFYHPQRFPESDNP 215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73280.17382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KFZ2_9PLAN3.160e-14696.28Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73280contigM-pyrifera_M_contig73280:2..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size645
Cds size645
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.9005053-CDS-M-pyrifera_M_contig73280:1..6461622816629.9005053-CDS-M-pyrifera_M_contig73280:1..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73280 2..646 -
1692278087.120984-CDS-M-pyrifera_M_contig73280:1..6461692278087.120984-CDS-M-pyrifera_M_contig73280:1..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73280 2..646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73280.17382.1prot_M-pyrifera_M_contig73280.17382.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73280 2..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73280.17382.1

>prot_M-pyrifera_M_contig73280.17382.1 ID=prot_M-pyrifera_M_contig73280.17382.1|Name=mRNA_M-pyrifera_M_contig73280.17382.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=215bp
MKNLFERQFVPLAIAVLAISSITVVCLFLLELFSAPQARYGALTLNFKDY
SLINVDHQNTSELNTKEQPHRFRVFNIYDSNNRLTDNLCFERKFLFSGGR
LIDWNEYKAIPISLPDSERFLNQRLVLHDRFFPKPSPGNWPEFTISASTG
ETPVISQLSVSEVKTVATYLVYLYASSDLLYAAYGADGTLIQIAHRTRRN
GGFYHPQRFPESDNP
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mRNA from alignment at M-pyrifera_M_contig73280:2..646-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73280.17382.1 ID=mRNA_M-pyrifera_M_contig73280.17382.1|Name=mRNA_M-pyrifera_M_contig73280.17382.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=645bp|location=Sequence derived from alignment at M-pyrifera_M_contig73280:2..646- (Macrocystis pyrifera P11B4 male)
ATGAAGAATTTATTCGAACGTCAGTTTGTCCCGCTGGCAATTGCGGTGCT
GGCCATTAGTTCTATCACGGTTGTCTGTTTATTCCTGTTGGAATTATTTT
CTGCCCCTCAAGCCCGGTATGGAGCGCTTACGCTTAACTTCAAAGACTAT
TCGCTAATCAATGTGGATCACCAGAATACATCTGAGTTAAATACAAAAGA
GCAGCCCCACCGGTTCAGAGTTTTTAATATCTATGATTCCAATAATCGGC
TGACCGATAATCTCTGTTTCGAACGGAAATTCTTATTCAGTGGGGGAAGA
CTGATCGACTGGAATGAATATAAAGCGATCCCGATTTCTCTTCCCGACAG
TGAACGATTCCTCAATCAGAGGCTGGTTCTTCATGATCGATTCTTTCCGA
AACCTTCACCAGGCAACTGGCCTGAATTTACGATATCAGCGTCAACAGGT
GAGACGCCTGTCATCTCTCAATTATCTGTGAGTGAAGTGAAGACGGTCGC
AACGTATCTCGTTTATTTATACGCTTCCTCTGATTTACTTTACGCAGCTT
ATGGAGCAGACGGGACTCTCATTCAGATTGCACATCGTACACGACGTAAT
GGAGGCTTCTATCATCCTCAACGGTTTCCCGAATCTGACAATCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73280:2..646-

>mRNA_M-pyrifera_M_contig73280.17382.1 ID=mRNA_M-pyrifera_M_contig73280.17382.1|Name=mRNA_M-pyrifera_M_contig73280.17382.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1290bp|location=Sequence derived from alignment at M-pyrifera_M_contig73280:2..646- (Macrocystis pyrifera P11B4 male)
ATGAAGAATTTATTCGAACGTCAGTTTGTCCCGCTGGCAATTGCGGTGCT
GGCCATTAGTTCTATCACGGTTGTCTGTTTATTCCTGTTGGAATTATTTT
CTGCCCCTCAAGCCCGGTATGGAGCGCTTACGCTTAACTTCAAAGACTAT
TCGCTAATCAATGTGGATCACCAGAATACATCTGAGTTAAATACAAAAGA
GCAGCCCCACCGGTTCAGAGTTTTTAATATCTATGATTCCAATAATCGGC
TGACCGATAATCTCTGTTTCGAACGGAAATTCTTATTCAGTGGGGGAAGA
CTGATCGACTGGAATGAATATAAAGCGATCCCGATTTCTCTTCCCGACAG
TGAACGATTCCTCAATCAGAGGCTGGTTCTTCATGATCGATTCTTTCCGA
AACCTTCACCAGGCAACTGGCCTGAATTTACGATATCAGCGTCAACAGGT
GAGACGCCTGTCATCTCTCAATTATCTGTGAGTGAAGTGAAGACGGTCGC
AACGTATCTCGTTTATTTATACGCTTCCTCTGATTTACTTTACGCAGCTT
ATGGAGCAGACGGGACTCTCATTCAGATTGCACATCGTACACGACGTAAT
GGAGGCTTCTATCATCCTCAACGGTTTCCCGAATCTGACAATCCTATGAA
GAATTTATTCGAACGTCAGTTTGTCCCGCTGGCAATTGCGGTGCTGGCCA
TTAGTTCTATCACGGTTGTCTGTTTATTCCTGTTGGAATTATTTTCTGCC
CCTCAAGCCCGGTATGGAGCGCTTACGCTTAACTTCAAAGACTATTCGCT
AATCAATGTGGATCACCAGAATACATCTGAGTTAAATACAAAAGAGCAGC
CCCACCGGTTCAGAGTTTTTAATATCTATGATTCCAATAATCGGCTGACC
GATAATCTCTGTTTCGAACGGAAATTCTTATTCAGTGGGGGAAGACTGAT
CGACTGGAATGAATATAAAGCGATCCCGATTTCTCTTCCCGACAGTGAAC
GATTCCTCAATCAGAGGCTGGTTCTTCATGATCGATTCTTTCCGAAACCT
TCACCAGGCAACTGGCCTGAATTTACGATATCAGCGTCAACAGGTGAGAC
GCCTGTCATCTCTCAATTATCTGTGAGTGAAGTGAAGACGGTCGCAACGT
ATCTCGTTTATTTATACGCTTCCTCTGATTTACTTTACGCAGCTTATGGA
GCAGACGGGACTCTCATTCAGATTGCACATCGTACACGACGTAATGGAGG
CTTCTATCATCCTCAACGGTTTCCCGAATCTGACAATCCT
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