mRNA_M-pyrifera_M_contig7297.17327.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7297.17327.1
Unique NamemRNA_M-pyrifera_M_contig7297.17327.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 5.580e-155
Identity = 215/308 (69.81%), Postives = 259/308 (84.09%), Query Frame = 1 
Query:    1 MIGGRCTMRLSSGATGRKL-----VSSPLFRQLSVSTLSTKQEMQGFTVRDQRPPRPRIAKEKRKEYLAQRRASFEVEQEKAAGLGLDWSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKAQFGKQFPSEMGFKYDDEKPLTMEEILEQSPIPLAPRRTPADESNDRTTLDRALDDRLVLIIKPRSEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDAMGTYLKHVI 909
            M   RCTM  SS     KL     + +P  R+LS S L+ KQ+++GFT++D+RPPRPR+AK+KRK+YLA+R+ +FE EQEKA  LGLDW I+SA++LERLPVI+E+Y DWQRDFWDLQT++A +G +FP+EMGFKYDDEK LTME++LEQSP+PLAPRRTPADESNDRTTLDRALD+RLVLI+KPRS   WRLPE++WE GETIRQ AERTA+ +L+K ATRKG RDDVAQLHFVGNCPAGWFWRTADE    +   FGDKVF+NRVQLI G+PT V+ +AAEHLWVTKHEIGEYLG++MG YLKH+I
Sbjct:    1 MFARRCTMLSSSAVRRVKLRPLAVLLAPNCRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.090e-31
Identity = 87/242 (35.95%), Postives = 123/242 (50.83%), Query Frame = 1 
Query:  184 YLAQRRASFEVEQEKAAGLGLDWSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKAQFGKQFPSEMGFKYDD-EKPLTMEEILEQSPIPLAPRRTPADESNDRTTLDRALDDRLVLIIK-PRSEAAWRLP----ETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTG---TFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            YL  R A     +  A    L W I +A ++ER P+I+++  DW+  + ++Q E A+ GK FP E+       E   + +E+L + P  LAPR T AD  NDRTTL+RAL +RL L+I+ P +   W LP    E   + G+    +  +T E      AT +    D  + +   N P G  WR   E    +TG   T+GDKVF  R Q + GR   V     E +WVT+ E+GEYL  A
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHE------ATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: A0A4D9D2E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.400e-23
Identity = 71/200 (35.50%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:  310 DWQRDFWDLQTEKAQFGKQFPSEMGFK-YDDEKPLTMEEILEQSPIPLAPRRTPADESNDRTTLDRALDDRLVLIIK-PRSEAAWRLP----ETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTG---TFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            DW+  + ++Q E A+ GK FP E+    +  E   + +++L + P  LAPR T AD  NDRTTL+RAL +RL L+I+ P +   W LP    E   + G+    +   T E      AT +    +  + +   N P G  WR   E    +TG    +GDKVF  R Q + GR   V     E +WVT+ E+GEYL  A
Sbjct:    6 DWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHE------ATVRRFMGEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGEQAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 3.910e-21
Identity = 78/217 (35.94%), Postives = 110/217 (50.69%), Query Frame = 1 
Query:  229 AAGLGLDWSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKA-QFGKQFPSEMGFKYDDEKPLTMEEILEQSPIPLAPRRTPADESNDRTTLDRALDDRLVLIIKPRSEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEA-AEHLWVTKHEIGEYL 873
            A+       +  AV+ ERLPV++ +  +W+R++++ Q   A ++ K+ P E    + D K   M+E    S  P APR T AD +NDR +L R LD RL +++  R +  W LP+     GET+RQ AER     +   A R          +FVGN PAG           A  G  G  +F +R QLI G P        +EH+WVTK E+GEYL
Sbjct:   40 ASAAAASGKLLGAVVFERLPVVVPEDPEWEREYFEWQDGLAGKYRKELPRE----FTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLV--RQKGGWTLPQQENAEGETMRQTAERALADAVELEAVRP---------YFVGNAPAG----------HAPLGDAGT-LFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYL 229
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: V4A4N9_LOTGI (MRP-L46 domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4N9_LOTGI)

HSP 1 Score: 94.0 bits (232), Expect = 7.080e-19
Identity = 67/234 (28.63%), Postives = 108/234 (46.15%), Query Frame = 1 
Query:  250 WSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKAQFGKQFPSEMGFKYDDEK---------PLTMEEI---------------LEQSPIPLAPRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYL 873
            W +  AV LER P+I ++  D+++   D  + K +      S+   ++ D+K          LT+EE+                E      APRRT ADE +DR + +R LD++L+LI+K R      W LP + W  GE++RQ A R  ++             D  +  F+GN P G+F     +  +    + G KVF  +     G     E + +++LWVTK E+ +Y+
Sbjct:    1 WDLFGAVCLERRPIITKEMTDYEKKMSDFLS-KLELENSLLSDHELRFRDDKLHAKRIKLEELTVEELENPREMAVEAEDKWKTELEEFTFAPRRTVADEKDDRKSTERKLDEKLILIVKQRLGKTDVWALPHSQWLDGESMRQTANRALDSQC----------GDQIKSCFIGNAPCGFFKYKYPK--KVVNESIGRKVFFFKALYENGPVKLKEGDVSDYLWVTKSELSDYM 221
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: J3S080_CROAD (39S ribosomal protein L46, mitochondrial n=3 Tax=Crotalus TaxID=8728 RepID=J3S080_CROAD)

HSP 1 Score: 93.6 bits (231), Expect = 1.730e-18
Identity = 70/234 (29.91%), Postives = 112/234 (47.86%), Query Frame = 1 
Query:  250 WSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKAQFGKQFPSEMGFKYDDEKPLTMEEILEQSPIPL---------------------APRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            W +  A+ L+R P++ +  +  + +  +L T++ +  K   S+   +   E  L  E   E+  IP                      APR T AD+++DRT+L+R LD  L+L++K +   E  W LP+T W+ GET+R   ER        + T  G R    Q  F+GN P G++     + +R+ T   G KVF  +   + G P     E  ++LWV+K E+G+YL  A
Sbjct:   34 WKLYGALCLQRRPLLAQLPSPEEEEMAEL-TQQIEVEKSLYSDHELRCFAEDELLRERNKEKYDIPEKVVLVQDIEDAWEQKFQKFKPAPRITEADQNDDRTSLNRKLDQNLLLLVKQKFGEEDIWLLPQTEWQQGETLRNTVERV-------LGTLPGIR---MQAKFLGNAPCGFYKFKFPKAIRSETNP-GGKVFFFKA-FLEGSPQLSSKETVDYLWVSKGELGDYLKPA 254
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: UPI001ABDC5A1 (39S ribosomal protein L46, mitochondrial isoform X1 n=4 Tax=Bufo TaxID=8383 RepID=UPI001ABDC5A1)

HSP 1 Score: 93.2 bits (230), Expect = 2.900e-18
Identity = 72/241 (29.88%), Postives = 117/241 (48.55%), Query Frame = 1 
Query:  241 GLDWSIKSAVLLERLPVIIEDYADWQRDFWDLQTEKAQFGKQFPSEMGFK---------------YD----DEKPLTMEEILEQS------PIPLAPRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            G  W +  AV L+R  V+ +  A  Q++  +L  ++    K F S+   +               YD    +E+ + M + LE +       + LAPR T ADE NDRT+L+R L++ LVL++K +  +E  W  P+  W AGET+RQ AER    +           D+  + HF+GN P G++     + +R      G KVF  +  L+ G+ +    +  +++WV K E+ +YL  A
Sbjct:   38 GSPWRLHGAVCLKRPAVVSQSKAAIQQEVDEL-LQQIDLEKSFYSDHELQLMKDAERLRRKQSDLYDSDEEEEQDIVMAQDLEDTWEQKWKQMKLAPRVTEADEKNDRTSLNRKLENNLVLLVKEKIGNEDIWMFPQIEWVAGETMRQTAERALSDL----------SDNRVEAHFLGNAPCGFYKYKFPKTMRNED-IVGAKVFFFKA-LLKGKSSLTNQKKRDYVWVCKDELKDYLKPA 265
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: A0A8C5MFH1_9ANUR (39S ribosomal protein L46, mitochondrial n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MFH1_9ANUR)

HSP 1 Score: 93.2 bits (230), Expect = 3.760e-18
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 1 
Query:  415 MEEILEQSP--IPLAPRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            +E++ EQ       APR T ADE ND+++L+R L++ LVL++K +  SE  WRLP+  W+ GET+RQ AER    +           ++  + HF+GN P G++     + LR    T G KVF  +  L +G   F   +  E++WV+K E+ +YL  A
Sbjct:  134 LEDLWEQKSRQFKTAPRVTEADEKNDKSSLNRKLENNLVLLVKDKLGSEDIWRLPQVEWQCGETMRQTAERALSNL----------SENRIEAHFLGNAPCGFYKYKFPKSLRTEDMT-GAKVFFFKALLKSG-DLFAAKKNGEYVWVSKDELKDYLKPA 281
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BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: A0A091NH04_9PASS (MRP-L46 domain-containing protein (Fragment) n=2 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091NH04_9PASS)

HSP 1 Score: 92.0 bits (227), Expect = 5.170e-18
Identity = 75/247 (30.36%), Postives = 113/247 (45.75%), Query Frame = 1 
Query:  250 WSIKSAVLLERLPVIIEDYADWQRD----------------FWDLQTEKAQFGKQFPSEMGFKYDDE----KPLTMEEILEQS------PIPLAPRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDAMGTYLKHV 906
            W +  A+ L RLP + ++    + +                + D +  K +  +Q        YDD+    K L M + LE            APR T AD++N+RT+LDR LD  L+L++K +  ++  W LP+  W+ GET+R  AER   T L           D  Q   +GN P G +     + +R      G KVF  +  L +   +  E +A +HLWVTK+E+G+YL      YLK V
Sbjct:   17 WRLFGAMCLLRLPRVTQEMEKEEEEVAALMAQVRGEQEKSCYSDHEIRKLEEEEQLKKRKESLYDDDEGSGKTLIMAQDLEDKWEQKLLQFKAAPRITDADKNNNRTSLDRKLDSNLMLLVKQKIGNQELWLLPQVEWQPGETLRSTAERAMATFL----------GDHVQAKILGNAPYGIYKYKFPKAIRTEDNV-GAKVFFFKAFLQSSDLSRAEPKA-DHLWVTKNELGDYL---KSEYLKKV 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Match: UPI000D6A364F (39S ribosomal protein L46, mitochondrial isoform X2 n=2 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A364F)

HSP 1 Score: 90.5 bits (223), Expect = 8.560e-18
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:  451 APRRTPADESNDRTTLDRALDDRLVLIIKPR--SEAAWRLPETSWEAGETIRQAAERTAETML-VKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRARTGTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDA 882
            APR T AD +NDRT+L+R LD  L+L++K +   E  W LP+T W+ GET+R   ER   T+  ++M           Q  F+GN P G++       +R  + T G KVF  +  L A  P F   E  ++LWV+K E+G+YL  A
Sbjct:   70 APRITDADRNNDRTSLNRKLDQNLLLLVKQKFGDEDIWVLPQTEWQHGETLRDTVERVLVTLPGIQM-----------QAKFLGNAPCGFYKFKFPRAIRTESNT-GGKVFFFKAFLEAS-PQFSSKEKLDYLWVSKGELGDYLKPA 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7297.17327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI5.580e-15569.81Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
W7TRZ1_9STRA5.090e-3135.95Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A4D9D2E5_9STRA4.400e-2335.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2P6VD62_9CHLO3.910e-2135.94Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
V4A4N9_LOTGI7.080e-1928.63MRP-L46 domain-containing protein (Fragment) n=1 T... [more]
J3S080_CROAD1.730e-1829.9139S ribosomal protein L46, mitochondrial n=3 Tax=C... [more]
UPI001ABDC5A12.900e-1829.8839S ribosomal protein L46, mitochondrial isoform X... [more]
A0A8C5MFH1_9ANUR3.760e-1836.2539S ribosomal protein L46, mitochondrial n=1 Tax=L... [more]
A0A091NH04_9PASS5.170e-1830.36MRP-L46 domain-containing protein (Fragment) n=2 T... [more]
UPI000D6A364F8.560e-1838.7839S ribosomal protein L46, mitochondrial isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7297contigM-pyrifera_M_contig7297:286..4820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.8
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D7G8Q3
Preferred nameMRPL46
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4548@1,KOG4548@2759
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
EC2.7.11.1,4.2.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Exons5
Model size995
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7297.17327.1prot_M-pyrifera_M_contig7297.17327.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7297 286..4737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.8847885-CDS-M-pyrifera_M_contig7297:285..5541622816626.8847885-CDS-M-pyrifera_M_contig7297:285..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 286..554 +
1692278085.3222756-CDS-M-pyrifera_M_contig7297:285..5541692278085.3222756-CDS-M-pyrifera_M_contig7297:285..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 286..554 +
1622816626.8957982-CDS-M-pyrifera_M_contig7297:931..11231622816626.8957982-CDS-M-pyrifera_M_contig7297:931..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 932..1123 +
1692278085.3402169-CDS-M-pyrifera_M_contig7297:931..11231692278085.3402169-CDS-M-pyrifera_M_contig7297:931..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 932..1123 +
1622816626.9066997-CDS-M-pyrifera_M_contig7297:3309..34301622816626.9066997-CDS-M-pyrifera_M_contig7297:3309..3430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 3310..3430 +
1692278085.3578873-CDS-M-pyrifera_M_contig7297:3309..34301692278085.3578873-CDS-M-pyrifera_M_contig7297:3309..3430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 3310..3430 +
1622816626.92202-CDS-M-pyrifera_M_contig7297:3901..40871622816626.92202-CDS-M-pyrifera_M_contig7297:3901..4087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 3902..4087 +
1692278085.37345-CDS-M-pyrifera_M_contig7297:3901..40871692278085.37345-CDS-M-pyrifera_M_contig7297:3901..4087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 3902..4087 +
1622816626.9348645-CDS-M-pyrifera_M_contig7297:4593..47371622816626.9348645-CDS-M-pyrifera_M_contig7297:4593..4737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 4594..4737 +
1692278085.384591-CDS-M-pyrifera_M_contig7297:4593..47371692278085.384591-CDS-M-pyrifera_M_contig7297:4593..4737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7297 4594..4737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.94714-UTR-M-pyrifera_M_contig7297:4737..48201622816626.94714-UTR-M-pyrifera_M_contig7297:4737..4820Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7297 4738..4820 +
1692278085.3963091-UTR-M-pyrifera_M_contig7297:4737..48201692278085.3963091-UTR-M-pyrifera_M_contig7297:4737..4820Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7297 4738..4820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7297.17327.1

>prot_M-pyrifera_M_contig7297.17327.1 ID=prot_M-pyrifera_M_contig7297.17327.1|Name=mRNA_M-pyrifera_M_contig7297.17327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=304bp
MIGGRCTMRLSSGATGRKLVSSPLFRQLSVSTLSTKQEMQGFTVRDQRPP
RPRIAKEKRKEYLAQRRASFEVEQEKAAGLGLDWSIKSAVLLERLPVIIE
DYADWQRDFWDLQTEKAQFGKQFPSEMGFKYDDEKPLTMEEILEQSPIPL
APRRTPADESNDRTTLDRALDDRLVLIIKPRSEAAWRLPETSWEAGETIR
QAAERTAETMLVKMATRKGHRDDVAQLHFVGNCPAGWFWRTADEGLRART
GTFGDKVFVNRVQLIAGRPTFVESEAAEHLWVTKHEIGEYLGDAMGTYLK
HVI*
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mRNA from alignment at M-pyrifera_M_contig7297:286..4820+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7297.17327.1 ID=mRNA_M-pyrifera_M_contig7297.17327.1|Name=mRNA_M-pyrifera_M_contig7297.17327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4535bp|location=Sequence derived from alignment at M-pyrifera_M_contig7297:286..4820+ (Macrocystis pyrifera P11B4 male)
ATGATTGGAGGACGGTGCACTATGCGTTTATCTTCAGGTGCGACTGGAAG
GAAGTTGGTGTCATCACCTTTGTTCCGTCAACTTAGTGTCTCTACGTTGT
CGACGAAACAAGAGATGCAGGGTTTCACTGTTCGAGACCAGAGGCCTCCA
AGGCCTCGTATCGCGAAGGAGAAACGAAAGGAATACCTCGCACAGCGACG
AGCTTCCTTTGAGGTGGAGCAAGAGAAAGCGGCAGGCCTTGGGCTTGACT
GGAGCATCAAGAGTGCCGTGTGAGTACAACATGGGCCTGGAACTGTTGAT
GGCATCCATGTGTCGCAGTATGGCAGCTGAATAATCCCATACCCCTATAA
CCATGACATGACCGTGTGGTCAACTCCGAGCCCATCCAGTCTCCTACGCA
ACTACCAACCAGGTACCTGGTACCCCGTACTACAGCAGTAGTCTACGTAC
GTACAGCAGCAAGCCAGGTACATATACACACTTCAGTCGTCTGGGTGTTT
TATTAAGCACATCAAACAAGGTGTCGGCGTTGTTCGTTACTTGCGATGAT
ATGCCTCCTGGGTCGGTGCGCCCCTGGCTTGCTCCTAATGACGCCATGCA
TGGCGACCATTTGGACCATTACGTCCGCGAACTCTTATCTCTACAGGCTT
TTGGAGCGACTCCCTGTTATCATCGAAGACTACGCCGACTGGCAGCGGGA
CTTTTGGGATTTGCAGACGGAAAAAGCCCAGTTTGGCAAACAGTTTCCCA
GCGAAATGGGCTTCAAGTACGACGACGAAAAGCCGCTAACTATGGAGGAG
ATACTGGAGCAAAGTCCCATCCCTCTCGCGCCTCGACGGTACGAGTTTGT
ACGTGTGTACCCGTAGATATATTATACGACGTAGTCATCGGAGTCTTGAG
TTTTGACAAGACCCGTGGTCTGTTGGACCCCCTAGCCCTGCAGCGCGCGT
GCAACTGCCGTGTTCACTGCATAAATAAACAGCATGGCCGAATGCCGCCA
TTCAGTTTGTTCGTAGCACATTCCCGTGCCACATTGAGTCGTTGCGTCCT
GGTGCTATGTACTGTGTCGAGCGTGGTATGTTCAAGCTCCGATAGCCAAG
ACGTGCATATTCTCGCAAGAGTATCTATAGTGTCATACAAGACTCCCCTT
CGGGATTATGGTTGACTTGAAATTCCTGGGGTGTCGCAAGCTGAAAAAGG
ATAACACGAAAACACAGCAGTAGGCGTTCGTTCCTCGTACGTACGTACCA
GCTACGCCTACGTAGCGACCGGGCGAAAACATACAACATGAAAAAGCTAC
GTAAAGGAAGCTAAGGAAAAAAGTAGCCAACGGGCAAGTAACACCGATCA
CCTCAAGCGAGTTATTAATAGTAGTTACTGCTGTAGTTCTAGTGGGGCAG
ACCGAAGCGTCCCGTGAACGAGAACTTGCCAAAAGTACGAGTATCCATTC
GTTGGAGCGGAATGAGAGCGGGAGGGTTATGCATCCACGAGAAAGAGCTG
TTGCTTATCTTGCTCAAAAATTATTCGTATGGCTGTGACTTTTGAGGGAG
AATTCCTTTGTTGTGCTGTCCTTCCGGTACATTCAACCGAAGGAAAGGGT
CAAATCACTTACACCTATCCCAATGGGAAAGCGATATTTCCATTAAAAAA
ATGAATTTTCGAATATACCTGCCCGACTTTTTTAGAACCAGCTTGCTATA
AGGCTGACTCTTATGGGAACCGAAACCGGAAAACAGAACAGGGTTTGTAG
AGAGGTCCAGGAAAATTTTCGTGACAGATCCGACTTATCTAATCTTGTCG
ATGGACAAAAAACAGAAATCTCTACAATATTTTCTGTATTTCGATCACAA
ATCGCCTGGCCAGACGACACCAGACACCAGTTCTGTACGGTCCCAGAGCT
GGCCGAAACTGAGGTTTTGCACCCCAGACAAGCGGCATAACGTGGCGGGC
CCAATACTTGTACCAGGTACATGTCGTTGCTACTACTGCTGTACTATCTC
GGTTTCCCCGCATATAGCGGTAGCTAGAGACTCCAACTCCGGTGATGGCG
AACGTATGACTACAGCGCATGCTCTTGGCGGTTGTCGTTGTGTGCTTGAA
CTTTCTGCAGTGCCAACGCACTGCTTGATGCTGTAGTGGACTGCCAAGCT
TGAGGAACCTTCGTCGAAGGAAGGCAACCCAGTCCAGGAAGCTCAAGTCT
GCGAAAGCAAGCCCCATGTTACCCGACGGGTACCAAACAAGATGCGTGGG
TGCCGTGTACTGCTGTGTGTCCGCCGGATTCAAATATTGCGGTAACTCCT
CCCTCCAACGCCCTCCCAACCCAAACGAAACCCCGGCATACTTACACAAA
ACACCATAAGATAGGAAAAGACAAACTCGATATACGGATCTGGGCCATGC
GAAAAACAGAAGTGCATGCCAGTTCTGCTTTCTGGTTTCGGCTCTCATAT
GATTCAGCCTAGTCACGATTCTTAAACCGAAAAGTTCTAAAATTTTGGAA
AACCCCGAAAAAAGCAGTAAAACTCGGGCGGAATTTAGTTCGAAGCGGCG
AGATCCCGAGTCCTCGACAGACATCGATCATAGAAACCAACGACTGAGTC
ATGAACTCTGAACGGGGTGCGCTCGTTGAAGGCTCCGACCCACCCTAGGG
TCATCGTGTTCACACGATGGCCGGTGATATGTGGCGGCCGCTGGCCAGTC
GTTTGATAAAATCACAATCGCTCACTGGTGAGCACAAAACAGATGACGCG
TTCCCATTGTCATAGGTCTTTTAAATACGAGCACAAACTCGTTCAGTTGT
TACTTTTGTCACAACTTGGTCTGGTTGATTTTTGACCCTACAGCTCTTAA
CAACACCCACGAGTATAGGGCAAGGGTCAAGTGAGTTTGCTTTGTTTAAA
CCCGTGTACGTCTGGCCCAAAGGTGATGGCCAACCGTTGTCACGGTGTTA
TTTATCATGGGTAACATCGAATTCTGCCGTGCGGTGTACGTGCCATGTGG
TTGGTGTACCTTTGTTGTATGCAGCACACCAGCAGATGAATCAAACGACC
GCACCACTTTGGACCGGGCGCTCGACGACCGACTGGTGTTGATAATCAAG
CCGAGATCTGAAGCAGCTTGGCGCCTTCCCGAGACTTCGTGGGAGGTACG
AACGAATGTATATCCTATACCTCCAACCCTGGGCTGTTCATCGGAGTAGA
TATACTTCGTGTGGAGAGAAACAACCTGTGAGCAACGGCAATGTCTGAGC
TGTTCGCCGGTTGCCTTGAAATTGAGGTGATGGACCGATATGATAGATTC
CACTGGCGGCTTCGGAGAGTAAATCTGCCCCCGTTGTCTGCCCCCGTTGT
GTCAGTTGAATGGAACGAAATATTTGGGTGGCGTCTGCGTCGCGAGGAAA
TGTTGCATGTCGCACCAAAACAAGGAACCCGATCGCTCACAGTTAAAACA
TGAAGCGCATGTGCTTTGACTGCTAACCAAAGTTATGGATGGTATGTACC
TTTTTGCTCATTTTTCTTGTGGGCGCTGCTGAAAGCTGGCCTGCGTCTTT
CGCGGTCGATTGGCGCACGACAATAAGGATATTTCCACATTTGCCCCGTT
TGGTCCATGCTGGTAGGCTGGAGAAACAATTCGTCAAGCAGCAGAGCGAA
CTGCGGAAACGATGCTTGTTAAGATGGCAACAAGGAAGGGCCATCGCGAC
GACGTAGCTCAGCTGCACTTCGTTGGAAACTGTCCGGCGGGGTGGTTCTG
GCGCACAGCGGATGAAGGTCTCCGGGCTCGAACAGGAACATTTGGGGACA
AGGTGCTTTTAACCTCTATTATGGCGACAGTAAGCGGCCGTATACACGCC
AGACGCGGTACTTGCGGACAACTGATCTAGATGCTCATCTTTATTTCAGC
GTTGCTTTGAAGCTGTCATACACAATAATCGTGTACAACGTTTACGAGAC
CAGACCAGTTACCGACAGCATTGATCGTTGGCGCGTTCATGAATGTACAC
GGAACATTCGGCCAAGGCATGATCGAATGTTGATCTAGACGTCGTTAGGG
GCATAGCAGGTGTACTATTAATAGGAAGGAAGTGTTCATTTTTTGGCCGG
CGTCATAATTTTGTGTACTTCGCATGTTGCCCTACATATTTCTGGTAGTC
GCGACTTGAGATGCATTCACAAAGTTCACGGCGTCATGGTTGTTGCCAAT
GTGCTACTCATAGCATCAGCAATATATGGTGCTGTTTTTCTAGGGAGGCG
TTGAACGAACAAGATAACCAAAGCACTTTCCCCGCTCAAACGTCTTCCGT
TCACCCAGGTGTTCGTGAACCGAGTACAACTCATCGCCGGCCGTCCTACT
TTCGTTGAAAGTGAAGCAGCCGAGCACCTCTGGGTGACCAAGCATGAAAT
AGGAGAGTATCTCGGGGACGCGATGGGAACGTACTTGAAGCACGTTATCT
AGGCTTCGCGAGATCAATTATGATGTTTTGAAACAGAAGAATCCAAAACG
AAAATGACGGGATACTCCTACACGATATTGTGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7297:286..4820+

>mRNA_M-pyrifera_M_contig7297.17327.1 ID=mRNA_M-pyrifera_M_contig7297.17327.1|Name=mRNA_M-pyrifera_M_contig7297.17327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1824bp|location=Sequence derived from alignment at M-pyrifera_M_contig7297:286..4820+ (Macrocystis pyrifera P11B4 male)
ATGATTGGAGGACGGTGCACTATGCGTTTATCTTCAGGTGCGACTGGAAG
GAAGTTGGTGTCATCACCTTTGTTCCGTCAACTTAGTGTCTCTACGTTGT
CGACGAAACAAGAGATGCAGGGTTTCACTGTTCGAGACCAGAGGCCTCCA
AGGCCTCGTATCGCGAAGGAGAAACGAAAGGAATACCTCGCACAGCGACG
AGCTTCCTTTGAGGTGGAGCAAGAGAAAGCGGCAGGCCTTGGGCTTGACT
GGAGCATCAAGAGTGCCGTATGATTGGAGGACGGTGCACTATGCGTTTAT
CTTCAGGTGCGACTGGAAGGAAGTTGGTGTCATCACCTTTGTTCCGTCAA
CTTAGTGTCTCTACGTTGTCGACGAAACAAGAGATGCAGGGTTTCACTGT
TCGAGACCAGAGGCCTCCAAGGCCTCGTATCGCGAAGGAGAAACGAAAGG
AATACCTCGCACAGCGACGAGCTTCCTTTGAGGTGGAGCAAGAGAAAGCG
GCAGGCCTTGGGCTTGACTGGAGCATCAAGAGTGCCGTGCTTTTGGAGCG
ACTCCCTGTTATCATCGAAGACTACGCCGACTGGCAGCGGGACTTTTGGG
ATTTGCAGACGGAAAAAGCCCAGTTTGGCAAACAGTTTCCCAGCGAAATG
GGCTTCAAGTACGACGACGAAAAGCCGCTAACTATGGAGGAGATACTGGA
GCAAAGTCCCATCCCTCTCGCGCCTCGACGGCTTTTGGAGCGACTCCCTG
TTATCATCGAAGACTACGCCGACTGGCAGCGGGACTTTTGGGATTTGCAG
ACGGAAAAAGCCCAGTTTGGCAAACAGTTTCCCAGCGAAATGGGCTTCAA
GTACGACGACGAAAAGCCGCTAACTATGGAGGAGATACTGGAGCAAAGTC
CCATCCCTCTCGCGCCTCGACGCACACCAGCAGATGAATCAAACGACCGC
ACCACTTTGGACCGGGCGCTCGACGACCGACTGGTGTTGATAATCAAGCC
GAGATCTGAAGCAGCTTGGCGCCTTCCCGAGACTTCGTGGGAGCACACCA
GCAGATGAATCAAACGACCGCACCACTTTGGACCGGGCGCTCGACGACCG
ACTGGTGTTGATAATCAAGCCGAGATCTGAAGCAGCTTGGCGCCTTCCCG
AGACTTCGTGGGAGGCTGGAGAAACAATTCGTCAAGCAGCAGAGCGAACT
GCGGAAACGATGCTTGTTAAGATGGCAACAAGGAAGGGCCATCGCGACGA
CGTAGCTCAGCTGCACTTCGTTGGAAACTGTCCGGCGGGGTGGTTCTGGC
GCACAGCGGATGAAGGTCTCCGGGCTCGAACAGGAACATTTGGGGACAAG
GCTGGAGAAACAATTCGTCAAGCAGCAGAGCGAACTGCGGAAACGATGCT
TGTTAAGATGGCAACAAGGAAGGGCCATCGCGACGACGTAGCTCAGCTGC
ACTTCGTTGGAAACTGTCCGGCGGGGTGGTTCTGGCGCACAGCGGATGAA
GGTCTCCGGGCTCGAACAGGAACATTTGGGGACAAGGTGTTCGTGAACCG
AGTACAACTCATCGCCGGCCGTCCTACTTTCGTTGAAAGTGAAGCAGCCG
AGCACCTCTGGGTGACCAAGCATGAAATAGGAGAGTATCTCGGGGACGCG
ATGGGAACGTACTTGAAGCACGTTATCTAGGTGTTCGTGAACCGAGTACA
ACTCATCGCCGGCCGTCCTACTTTCGTTGAAAGTGAAGCAGCCGAGCACC
TCTGGGTGACCAAGCATGAAATAGGAGAGTATCTCGGGGACGCGATGGGA
ACGTACTTGAAGCACGTTATCTAG
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