mRNA_M-pyrifera_M_contig72955.17324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72955.17324.1
Unique NamemRNA_M-pyrifera_M_contig72955.17324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72955.17324.1 vs. uniprot
Match: A0A800MEU9_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MEU9_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 4.720e-19
Identity = 76/229 (33.19%), Postives = 105/229 (45.85%), Query Frame = 1 
Query:  172 EYFAIMDFDENGWISFREGEESLSMTRTSFRQYDTDQDGRITPDEFGARYDELLDRTGGFPKPRAQGPPPKLGPEPSFVNQYDLNVDG----RLSGLELTEASRALGFGGLNGNAVMPLIDTNGSGFVEPAELSQVLADLGLLGTAGT--LPNEPKAR--SVEELFGHAEPRKLSPGAAPLPPHIAGPVRPFRRLDLDDDGALELADFDGLAISAHPRVSPGAVIATLD 834
            ++F++ D D NGW+ FRE + +L+  R  FR +D D DGRI  +EF   Y   +  +GGF  P  +    ++   P    Q  L  DG    R+   ELT    + G   L    VM   D  G   +   EL  +     LL  A    L N P A    V+ELFG     ++  G  P  P I GP+ PFRRLDL+ DG + LAD + L       +    ++  LD
Sbjct:  124 QWFSVCDTDANGWLRFRETKAALTFDRPQFRAFDEDNDGRIKLNEFTDYYRYRIISSGGFRPPAVKTK--RIAAPPRAATQLRLAFDGDANDRIDTDELTALLESYGRYDLTVIEVMEDHDITGDMQLNRDELEAITL---LLAAANPEDLDNMPLASVAGVDELFGALAGSEVYMGTHP--PRIVGPITPFRRLDLNGDGGISLADLEALQRPLRTNIRIHPILHALD 345
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BLAST of mRNA_M-pyrifera_M_contig72955.17324.1 vs. uniprot
Match: A0A518EQC4_9BACT (EF hand n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EQC4_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 7.930e-17
Identity = 75/235 (31.91%), Postives = 108/235 (45.96%), Query Frame = 1 
Query:  175 YFAIMDFDENGWISFREGEESLSMTRTSFRQYDTDQDGRITPDEFGARYDELLDRTGGFPKP---RAQGPPPKLGPEPSFVNQYDLNVDGRLSGLELTEASRALGFGG--LNGNAVMPLIDTNGSGFVEPAELSQVLADLGLLGTAGTLPNE--PKARSVEELFGHAEPRKLSPGAAPLPPHIAGPVRPFRRLDLDDDGALELADFDGLAISAHPRVSPGAVIATLDLDGAGVLS 858
            +F++ D D + WISFRE   S+      F  +D D DGR+T +EF    +E   +     +P      G P +       V  YD + DG +S  E     R             V   +D +GS  +   EL ++ + L  LG +   P    P A +V +LFG  +    S      PP IAGPV PFRRLD+D+DG +EL D + L   +   +   +V+  LD+D  G LS
Sbjct:  131 WFSVADADSSEWISFREAAASMRFDAPRFCFFDKDNDGRMTFEEFSGYVEEEASKNRRIVEPVLADLDGAPRRRNAGQLRV-AYDTDGDGAISRFEFETILRDYDQEARVFESKDVFLRLDVDGSKTLGVDELDRLASYLSPLGGSSAAPKPVMPGASTVLDLFGAVQDMGDS-----HPPRIAGPVPPFRRLDIDNDGFVELEDLERLEGRSFNPIRLKSVLNMLDIDYDGRLS 359
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BLAST of mRNA_M-pyrifera_M_contig72955.17324.1 vs. uniprot
Match: A0A2D6HH46_9BACT (EF-hand domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HH46_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 6.090e-9
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  175 YFAIMDFDENGWISFREGEESLSMTRTSFRQYDTDQDGRITPDEFGARYDELLDRTGGFPKP 360
            YF I D+DENGWISFRE   +L ++R  F  YD D+DGR+  +EF A Y + + R G F  P
Sbjct:   74 YFTICDYDENGWISFREASAALGLSRPRFFAYDRDRDGRVLREEFLAVYLDTVRRLGAFQPP 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72955.17324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A800MEU9_9BACT4.720e-1933.19Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A518EQC4_9BACT7.930e-1731.91EF hand n=1 Tax=Planctomycetes bacterium Poly30 Ta... [more]
A0A2D6HH46_9BACT6.090e-950.00EF-hand domain-containing protein n=1 Tax=Planctom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72955contigM-pyrifera_M_contig72955:120..1112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size861
Cds size861
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72955.17324.1prot_M-pyrifera_M_contig72955.17324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72955 120..1112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.7391405-CDS-M-pyrifera_M_contig72955:119..2811622816626.7391405-CDS-M-pyrifera_M_contig72955:119..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 120..281 +
1692278085.219242-CDS-M-pyrifera_M_contig72955:119..2811692278085.219242-CDS-M-pyrifera_M_contig72955:119..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 120..281 +
1622816626.7502086-CDS-M-pyrifera_M_contig72955:335..5721622816626.7502086-CDS-M-pyrifera_M_contig72955:335..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 336..572 +
1692278085.2306468-CDS-M-pyrifera_M_contig72955:335..5721692278085.2306468-CDS-M-pyrifera_M_contig72955:335..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 336..572 +
1622816626.761326-CDS-M-pyrifera_M_contig72955:650..11121622816626.761326-CDS-M-pyrifera_M_contig72955:650..1112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 651..1112 +
1692278085.2413042-CDS-M-pyrifera_M_contig72955:650..11121692278085.2413042-CDS-M-pyrifera_M_contig72955:650..1112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72955 651..1112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72955.17324.1

>prot_M-pyrifera_M_contig72955.17324.1 ID=prot_M-pyrifera_M_contig72955.17324.1|Name=mRNA_M-pyrifera_M_contig72955.17324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=287bp
MHPAPIALTLAALASPALFTAGQDRGADPAPQDAPTEAPAETPADADQDT
SAPKLEAEYFAIMDFDENGWISFREGEESLSMTRTSFRQYDTDQDGRITP
DEFGARYDELLDRTGGFPKPRAQGPPPKLGPEPSFVNQYDLNVDGRLSGL
ELTEASRALGFGGLNGNAVMPLIDTNGSGFVEPAELSQVLADLGLLGTAG
TLPNEPKARSVEELFGHAEPRKLSPGAAPLPPHIAGPVRPFRRLDLDDDG
ALELADFDGLAISAHPRVSPGAVIATLDLDGAGVLSP
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mRNA from alignment at M-pyrifera_M_contig72955:120..1112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72955.17324.1 ID=mRNA_M-pyrifera_M_contig72955.17324.1|Name=mRNA_M-pyrifera_M_contig72955.17324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=993bp|location=Sequence derived from alignment at M-pyrifera_M_contig72955:120..1112+ (Macrocystis pyrifera P11B4 male)
ATGCACCCCGCTCCGATCGCCTTGACCCTCGCCGCGCTCGCCTCGCCTGC
GCTCTTCACCGCTGGCCAGGACCGCGGTGCGGACCCCGCTCCGCAAGACG
CGCCGACCGAAGCGCCGGCGGAGACGCCTGCGGATGCCGACCAGGACACG
TCAGCCCCCAAGGTCAGCACCGACCTCGCCGGCGATGGCGACCCGACGAC
CGCCGATCGCGCGCAGCTCGAGGCGGAGTACTTCGCGATCATGGACTTTG
ACGAGAACGGCTGGATCTCGTTCCGCGAGGGCGAGGAGTCGCTCTCGATG
ACGCGCACGAGCTTTCGCCAGTACGACACCGATCAGGATGGCCGCATCAC
GCCGGACGAGTTCGGCGCGCGCTACGACGAGCTGCTCGACCGCACCGGCG
GCTTCCCCAAGCCGCGTGCACAAGGCCCGCCGCCCAAGCTCGGCCCCGAG
CCCGTGCCCGTCACGCCCGGCAACCTCGACGCGATCCTCGGCACGCTGCC
GCCCGCGCCGGCGCCGACGGTGACGCCCGAGTCGTTCGTCAACCAGTACG
ACCTGAACGTCGATGGCCGCCTGTCCGGACTCGAGCTGACCGAGGCGAGC
CGCGCGCTCGGCTTCGGGGGCCTGAACGGCAACGCGGTCATGCCGCTGAT
CGACACAAACGGCTCGGGCTTCGTCGAACCGGCCGAGCTGAGCCAGGTGC
TCGCGGACCTCGGCCTGCTCGGCACGGCCGGCACCCTGCCGAACGAGCCC
AAGGCGCGCAGCGTCGAAGAGCTCTTCGGCCACGCCGAGCCGCGCAAGCT
GTCGCCCGGCGCGGCCCCGCTCCCGCCGCACATCGCCGGCCCGGTGCGCC
CCTTCCGGCGCCTCGACCTCGACGACGACGGCGCGCTCGAGCTGGCCGAC
TTCGACGGCCTCGCGATCTCGGCCCACCCGCGGGTCTCGCCCGGCGCGGT
GATCGCGACGCTCGATCTCGACGGCGCCGGCGTGCTGTCGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72955:120..1112+

>mRNA_M-pyrifera_M_contig72955.17324.1 ID=mRNA_M-pyrifera_M_contig72955.17324.1|Name=mRNA_M-pyrifera_M_contig72955.17324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1722bp|location=Sequence derived from alignment at M-pyrifera_M_contig72955:120..1112+ (Macrocystis pyrifera P11B4 male)
ATGCACCCCGCTCCGATCGCCTTGACCCTCGCCGCGCTCGCCTCGCCTGC
GCTCTTCACCGCTGGCCAGGACCGCGGTGCGGACCCCGCTCCGCAAGACG
CGCCGACCGAAGCGCCGGCGGAGACGCCTGCGGATGCCGACCAGGACACG
TCAGCCCCCAAGATGCACCCCGCTCCGATCGCCTTGACCCTCGCCGCGCT
CGCCTCGCCTGCGCTCTTCACCGCTGGCCAGGACCGCGGTGCGGACCCCG
CTCCGCAAGACGCGCCGACCGAAGCGCCGGCGGAGACGCCTGCGGATGCC
GACCAGGACACGTCAGCCCCCAAGCTCGAGGCGGAGTACTTCGCGATCAT
GGACTTTGACGAGAACGGCTGGATCTCGTTCCGCGAGGGCGAGGAGTCGC
TCTCGATGACGCGCACGAGCTTTCGCCAGTACGACACCGATCAGGATGGC
CGCATCACGCCGGACGAGTTCGGCGCGCGCTACGACGAGCTGCTCGACCG
CACCGGCGGCTTCCCCAAGCCGCGTGCACAAGGCCCGCCGCCCAAGCTCG
GCCCCGAGCCCCTCGAGGCGGAGTACTTCGCGATCATGGACTTTGACGAG
AACGGCTGGATCTCGTTCCGCGAGGGCGAGGAGTCGCTCTCGATGACGCG
CACGAGCTTTCGCCAGTACGACACCGATCAGGATGGCCGCATCACGCCGG
ACGAGTTCGGCGCGCGCTACGACGAGCTGCTCGACCGCACCGGCGGCTTC
CCCAAGCCGCGTGCACAAGGCCCGCCGCCCAAGCTCGGCCCCGAGCCCTC
GTTCGTCAACCAGTACGACCTGAACGTCGATGGCCGCCTGTCCGGACTCG
AGCTGACCGAGGCGAGCCGCGCGCTCGGCTTCGGGGGCCTGAACGGCAAC
GCGGTCATGCCGCTGATCGACACAAACGGCTCGGGCTTCGTCGAACCGGC
CGAGCTGAGCCAGGTGCTCGCGGACCTCGGCCTGCTCGGCACGGCCGGCA
CCCTGCCGAACGAGCCCAAGGCGCGCAGCGTCGAAGAGCTCTTCGGCCAC
GCCGAGCCGCGCAAGCTGTCGCCCGGCGCGGCCCCGCTCCCGCCGCACAT
CGCCGGCCCGGTGCGCCCCTTCCGGCGCCTCGACCTCGACGACGACGGCG
CGCTCGAGCTGGCCGACTTCGACGGCCTCGCGATCTCGGCCCACCCGCGG
GTCTCGCCCGGCGCGGTGATCGCGACGCTCGATCTCGACGGCGCCGGCGT
GCTGTCGCCCTCGTTCGTCAACCAGTACGACCTGAACGTCGATGGCCGCC
TGTCCGGACTCGAGCTGACCGAGGCGAGCCGCGCGCTCGGCTTCGGGGGC
CTGAACGGCAACGCGGTCATGCCGCTGATCGACACAAACGGCTCGGGCTT
CGTCGAACCGGCCGAGCTGAGCCAGGTGCTCGCGGACCTCGGCCTGCTCG
GCACGGCCGGCACCCTGCCGAACGAGCCCAAGGCGCGCAGCGTCGAAGAG
CTCTTCGGCCACGCCGAGCCGCGCAAGCTGTCGCCCGGCGCGGCCCCGCT
CCCGCCGCACATCGCCGGCCCGGTGCGCCCCTTCCGGCGCCTCGACCTCG
ACGACGACGGCGCGCTCGAGCTGGCCGACTTCGACGGCCTCGCGATCTCG
GCCCACCCGCGGGTCTCGCCCGGCGCGGTGATCGCGACGCTCGATCTCGA
CGGCGCCGGCGTGCTGTCGCCC
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