mRNA_M-pyrifera_M_contig72952.17323.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72952.17323.1
Unique NamemRNA_M-pyrifera_M_contig72952.17323.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: UPI001CF4FCA9 (vacuolar protein sorting-associated protein 33A-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF4FCA9)

HSP 1 Score: 138 bits (348), Expect = 2.770e-35
Identity = 71/145 (48.97%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    1 SGPYGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGV-RQLSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQGNQ-DFVIATTKLINGTSLLKSLVE 429
            S  Y  +RK+LKLVV+   D+Q     D+AYV+S +AP+T RL Q   RP  WR +E+ L+ +PGP +E  Q +P G+ ++ S   G +    SKVTL++FIGGCT+ EISA+RFL +Q+ +Q D++IATTK+INGT+LL+S++E
Sbjct:  466 SRSYNVLRKSLKLVVE---DVQEQNPNDIAYVFSGYAPLTVRLAQFLARPQAWRGLEEVLRLLPGPAIEEIQRLPPGLQKRASPGAGHSMDSPSKVTLIYFIGGCTHAEISALRFLSRQENSQMDYLIATTKIINGTALLQSIME 607          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: A0A7S4HLD1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HLD1_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 3.530e-35
Identity = 71/150 (47.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHK-QQGNQDFVIATTKLINGTSLLKSLVEPVGNATPEN 456
            Y  +RK+L+L+V    D+      D++YVYS  AP++ R+V+A      W +I+D LK +PGP     Q+IP G++QLS D   +QG R+KVTLVFFIGG TY EI+AIRFLH  + G +DF+IATT  +NG +LL +L++P+G    +N
Sbjct:  461 YPGLRKSLRLIVK---DINLKEPNDISYVYSGMAPMSVRIVEATASNEKWANIQDTLKPLPGPQFRERQEIPEGIKQLSADR--SQGRRNKVTLVFFIGGITYAEIAAIRFLHTLENGTRDFIIATTAFVNGNNLLGTLIDPIGKLDTQN 605          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: A0A7M5XI51_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XI51_9CNID)

HSP 1 Score: 138 bits (347), Expect = 3.560e-35
Identity = 76/153 (49.67%), Postives = 108/153 (70.59%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGA---AQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQG-NQDFVIATTKLINGTSLLKSLVEPVGNATPEN 456
            Y  +RK+LKLVV++  + Q N   D+AYV+S +AP++ RL Q   R  GWR +E+ LK +PGPTVE +Q+IPA +  L ++TG    A GP  +VTLV+F+GGCTY+EISA+RFL +Q+  + D+VIATT +INGTSL++S +E +      N
Sbjct:  460 YNLLRKSLKLVVEDVQETQPN---DIAYVHSGYAPLSVRLAQFLERQSGWRGLEEILKQLPGPTVEEKQNIPAAL--LKKNTGGQSNADGP-PRVTLVYFLGGCTYSEISALRFLAQQENASTDYVIATTNIINGTSLVESAIEQMDKIPVNN 606          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: F4PGZ1_CAVFA (Sec1-like family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGZ1_CAVFA)

HSP 1 Score: 137 bits (345), Expect = 3.750e-35
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQ-QGNQDFVIATTKLINGTSLLKSLVEPVG 438
            Y  ++++L L+++   D+     TD+AYVYS +AP++ RLVQAA +PGGWRSIE AL+ +PGPT E  Q +P G +        A+  R  +TLV+FIGG T+ EISA+RFL +Q Q N+DFVI TTKLING S +  +VE  G
Sbjct:  400 YPLIKQDLNLIIE---DLDETNQTDIAYVYSGYAPLSVRLVQAATKPGGWRSIEQALRLLPGPTFEEVQPLPQGAQS------NAKSDRKPITLVYFIGGVTFAEISALRFLGRQEQANRDFVIITTKLINGDSFVDGIVEKFG 534          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: A0A067QIC5_ZOONE (Vacuolar protein sorting-associated protein 33A n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QIC5_ZOONE)

HSP 1 Score: 136 bits (343), Expect = 1.350e-34
Identity = 70/153 (45.75%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 SGPYGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAG--VRQLSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQGNQ-DFVIATTKLINGTSLLKSLVEPVGNATP 450
            S  Y  +RK L+L V++  ++   + TD++YV+S +AP++ RL Q  VRP GWR ++D L  +PGPT+E  Q +P G   R+ S  + ++Q    +V LVFF+GGCT+ E+SA+RFL +Q+ +  +FVIATTKLING + LK L+EP+G   P
Sbjct:  461 SRQYTVLRKTLRLTVEDGSEI---VPTDISYVHSVYAPVSVRLAQYLVRPNGWRGLQDVLGLLPGPTIEESQSLPVGRGPRRGSIGSQSSQNDMPRVVLVFFLGGCTFAEVSALRFLSQQEDSLVEFVIATTKLINGNTFLKYLMEPLGPDIP 610          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: A0A1Z5LB86_ORNMO (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LB86_ORNMO)

HSP 1 Score: 130 bits (326), Expect = 2.100e-34
Identity = 71/145 (48.97%), Postives = 95/145 (65.52%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGAAQGP--RSKVTLVFFIGGCTYTEISAIRFLHKQQGNQ-DFVIATTKLINGTSLLKSLVEPV 435
            Y  +RK LKL V++  +   N   D +YVYS +AP++ RL Q    PG WR+I DALK +PGPTV   Q  P G+R+      + Q      KVTLVFF+GGCT+ EISA+RFL +Q     ++++ATTKLINGT+ LKS++EPV
Sbjct:  118 YSIIRKTLKLTVEDVSEQTPN---DASYVYSGYAPLSVRLAQFLALPG-WRAISDALKLLPGPTVTEVQQKPVGMRRRRGSISSLQSSTDEQKVTLVFFLGGCTFAEISALRFLSQQDDAPVEYIVATTKLINGTTFLKSVMEPV 258          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: A0A7D9K6D9_PARCT (Vacuolar sorting-associated 33A-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6D9_PARCT)

HSP 1 Score: 127 bits (319), Expect = 3.130e-34
Identity = 69/154 (44.81%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQ----LSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQGNQ-DFVIATTKLINGTSLLKSLVE--PVGNATP 450
            + T+RK+  L V    D+Q     D++Y YS +AP++ RL Q A RP GWR +E+ LK +PGPT++  Q +P G+ +    LS    +  GP+ KVTLV+F+GGCTY E++A+RFL +Q     D++IATTK+ING S L+S++E  P  N+ P
Sbjct:   34 FPTLRKSFHLDVH---DVQEQNPRDISYTYSGYAPLSVRLAQHAARPSGWRGVEEVLKLLPGPTIDEIQHLPQGLHKRTLSLSGSMESGDGPQ-KVTLVYFLGGCTYAEVAALRFLSQQDNAPTDYIIATTKMINGNSWLESIMESKPEENSNP 183          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: UPI001F048E32 (vacuolar protein sorting-associated protein 33A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F048E32)

HSP 1 Score: 134 bits (338), Expect = 6.720e-34
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQ---LSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQGNQ-DFVIATTKLINGTSLLKSLVEP 432
            +  +RK+L L V    D+      D+AY YS +AP++ RL Q A RP GWR IE+ LK +PGPT++  Q +P G+++   L+E   +A GP  K+TL++FIGGCTY E++A+RFL +Q   Q D++IATTK+ING SLL+S+VEP
Sbjct:  465 FPILRKSLNLDVK---DVHEQNPRDIAYTYSGYAPLSVRLAQYASRPSGWRGIEEVLKLVPGPTIDEIQHLPQGLKRAASLNESIESADGP-PKLTLIYFIGGCTYAEVAALRFLSQQDNVQTDYLIATTKMINGNSLLESIVEP 605          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: E0W3Q6_PEDHC (Vacuolar protein sorting 33A, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W3Q6_PEDHC)

HSP 1 Score: 134 bits (337), Expect = 8.890e-34
Identity = 73/147 (49.66%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 SGPYGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAG-VRQLSEDT--GAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQG-NQDFVIATTKLINGTSLLKSLVE 429
            S PY  +RK L+L V++  +++     D++YV+S +API+ RL Q  V+ GGW+SI+D L  +PGPT+E  Q IP G  R+ S+ +     QG  ++V LVFFIGGCT+ EISA+RFL +Q+  N +FVIATTKLING S LK+++E
Sbjct:  463 SRPYTILRKMLRLTVEDGSEVEP---VDISYVHSIYAPISVRLAQHLVKQGGWKSIQDVLGVLPGPTIEGTQVIPTGHTRRGSKGSLSSQVQGDNTRVILVFFIGGCTFAEISALRFLSQQEELNVEFVIATTKLINGNSFLKTIME 606          
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Match: UPI001376A7E6 (vacuolar protein sorting-associated protein 33A-like n=1 Tax=Thamnophis elegans TaxID=35005 RepID=UPI001376A7E6)

HSP 1 Score: 125 bits (314), Expect = 1.550e-33
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   10 YGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRPGGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGAAQGPRSKVTLVFFIGGCTYTEISAIRFLHKQQ-GNQDFVIATTKLINGTSLLKSLVE 429
            Y T+RK L+L +D+  +   N   D++YVYS +AP++ RL Q   RPG WRSIE+ LK +PGP  E  Q +P G+++        Q   +++TLVFF+GG TY EI+A+RFL + + G  ++VIATTKLINGTS +KS++E
Sbjct:   43 YPTIRKTLRLWMDDVNEQNPN---DISYVYSGYAPLSVRLAQLLARPG-WRSIEEVLKILPGPHFEERQQLPTGLQK------KRQHGENRITLVFFLGGVTYAEIAALRFLSQMEDGGTEYVIATTKLINGTSWIKSMME 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72952.17323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF4FCA92.770e-3548.97vacuolar protein sorting-associated protein 33A-li... [more]
A0A7S4HLD1_9EUKA3.530e-3547.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7M5XI51_9CNID3.560e-3549.67Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
F4PGZ1_CAVFA3.750e-3550.00Sec1-like family protein n=1 Tax=Cavenderia fascic... [more]
A0A067QIC5_ZOONE1.350e-3445.75Vacuolar protein sorting-associated protein 33A n=... [more]
A0A1Z5LB86_ORNMO2.100e-3448.97Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A7D9K6D9_PARCT3.130e-3444.81Vacuolar sorting-associated 33A-like n=2 Tax=Param... [more]
UPI001F048E326.720e-3448.97vacuolar protein sorting-associated protein 33A-li... [more]
E0W3Q6_PEDHC8.890e-3449.66Vacuolar protein sorting 33A, putative n=1 Tax=Ped... [more]
UPI001376A7E61.550e-3347.52vacuolar protein sorting-associated protein 33A-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72952contigM-pyrifera_M_contig72952:540..1063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score138.3
Seed ortholog evalue3.1e-30
Seed eggNOG ortholog136037.KDR08539
KEGG koko:K20182
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the STXBP unc-18 SEC1 family
EggNOG OGs38B73@33154,3B9TH@33208,3CRDQ@33213,3SKJY@50557,41XAT@6656,COG5158@1,KOG1302@2759
COG Functional cat.U
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.6932242-CDS-M-pyrifera_M_contig72952:539..7661622816626.6932242-CDS-M-pyrifera_M_contig72952:539..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72952 540..766 -
1692278085.1944065-CDS-M-pyrifera_M_contig72952:539..7661692278085.1944065-CDS-M-pyrifera_M_contig72952:539..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72952 540..766 -
1622816626.7083132-CDS-M-pyrifera_M_contig72952:822..10631622816626.7083132-CDS-M-pyrifera_M_contig72952:822..1063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72952 823..1063 -
1692278085.2082603-CDS-M-pyrifera_M_contig72952:822..10631692278085.2082603-CDS-M-pyrifera_M_contig72952:822..1063Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72952 823..1063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72952.17323.1prot_M-pyrifera_M_contig72952.17323.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72952 540..1063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72952.17323.1

>prot_M-pyrifera_M_contig72952.17323.1 ID=prot_M-pyrifera_M_contig72952.17323.1|Name=mRNA_M-pyrifera_M_contig72952.17323.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
SGPYGTVRKNLKLVVDNALDMQTNIATDMAYVYSCFAPITGRLVQAAVRP
GGWRSIEDALKAIPGPTVEAEQDIPAGVRQLSEDTGAAQGPRSKVTLVFF
IGGCTYTEISAIRFLHKQQGNQDFVIATTKLINGTSLLKSLVEPVGNATP
ENIAA*
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mRNA from alignment at M-pyrifera_M_contig72952:540..1063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72952.17323.1 ID=mRNA_M-pyrifera_M_contig72952.17323.1|Name=mRNA_M-pyrifera_M_contig72952.17323.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=524bp|location=Sequence derived from alignment at M-pyrifera_M_contig72952:540..1063- (Macrocystis pyrifera P11B4 male)
TCGGGGCCCTACGGTACCGTGCGCAAGAACCTCAAGCTGGTGGTCGACAA CGCCCTGGACATGCAAACCAACATTGCAACGGACATGGCGTACGTCTACT CCTGCTTTGCGCCGATCACCGGCCGCCTCGTGCAGGCCGCCGTGCGCCCA GGCGGCTGGCGCTCAATCGAGGACGCGCTCAAGGCCATCCCCGGCCCCAC GGTGGAGGCCGAGCAGGACATTCCCGCAGGAGTCCGACAACGTGAGGTTC CCCCGCTGCTTGACGTCTCTGCGGTGCACCTTCTGACGCCTGCACAGTTT CCGAAGACACAGGCGCCGCGCAGGGGCCGCGGAGCAAAGTGACTCTGGTG TTCTTCATTGGAGGCTGCACTTACACGGAGATCTCTGCGATTCGCTTTCT CCACAAGCAGCAAGGCAACCAGGACTTCGTGATTGCCACTACGAAGCTCA TCAACGGCACGAGCCTGCTCAAGAGCTTGGTCGAGCCTGTGGGCAATGCC ACGCCAGAGAATATCGCAGCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72952:540..1063-

>mRNA_M-pyrifera_M_contig72952.17323.1 ID=mRNA_M-pyrifera_M_contig72952.17323.1|Name=mRNA_M-pyrifera_M_contig72952.17323.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig72952:540..1063- (Macrocystis pyrifera P11B4 male)
TCGGGGCCCTACGGTACCGTGCGCAAGAACCTCAAGCTGGTGGTCGACAA
CGCCCTGGACATGCAAACCAACATTGCAACGGACATGGCGTACGTCTACT
CCTGCTTTGCGCCGATCACCGGCCGCCTCGTGCAGGCCGCCGTGCGCCCA
GGCGGCTGGCGCTCAATCGAGGACGCGCTCAAGGCCATCCCCGGCCCCAC
GGTGGAGGCCGAGCAGGACATTCCCGCAGGAGTCCGACAACTCGGGGCCC
TACGGTACCGTGCGCAAGAACCTCAAGCTGGTGGTCGACAACGCCCTGGA
CATGCAAACCAACATTGCAACGGACATGGCGTACGTCTACTCCTGCTTTG
CGCCGATCACCGGCCGCCTCGTGCAGGCCGCCGTGCGCCCAGGCGGCTGG
CGCTCAATCGAGGACGCGCTCAAGGCCATCCCCGGCCCCACGGTGGAGGC
CGAGCAGGACATTCCCGCAGGAGTCCGACAACTTTCCGAAGACACAGGCG
CCGCGCAGGGGCCGCGGAGCAAAGTGACTCTGGTGTTCTTCATTGGAGGC
TGCACTTACACGGAGATCTCTGCGATTCGCTTTCTCCACAAGCAGCAAGG
CAACCAGGACTTCGTGATTGCCACTACGAAGCTCATCAACGGCACGAGCC
TGCTCAAGAGCTTGGTCGAGCCTGTGGGCAATGCCACGCCAGAGAATATC
GCAGCTTAATTTCCGAAGACACAGGCGCCGCGCAGGGGCCGCGGAGCAAA
GTGACTCTGGTGTTCTTCATTGGAGGCTGCACTTACACGGAGATCTCTGC
GATTCGCTTTCTCCACAAGCAGCAAGGCAACCAGGACTTCGTGATTGCCA
CTACGAAGCTCATCAACGGCACGAGCCTGCTCAAGAGCTTGGTCGAGCCT
GTGGGCAATGCCACGCCAGAGAATATCGCAGCTTAA
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