mRNA_M-pyrifera_M_contig72917.17321.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72917.17321.1
Unique NamemRNA_M-pyrifera_M_contig72917.17321.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR)

HSP 1 Score: 161 bits (407), Expect = 2.070e-49
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:    1 WLQEDD-LVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVESGSRE 312
            W QE+D  V  LV ++G KKWSLIA HLP R+GKQCRERWHNHL P I KGPWTEEED  IY+ H   GNKWA IAKLLPGRTDNAIKNHWNS+MR+K+E   RE
Sbjct:    8 WTQEEDNQVVELVKKYGAKKWSLIAQHLPGRIGKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHWNSTMRRKMERERRE 112
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A7RPT8_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPT8_NEMVE)

HSP 1 Score: 157 bits (397), Expect = 2.640e-47
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKV 294
            +ED+ V  LV ++GPKKWSLIA HL  R+GKQCRERWHNHL P I K  WTEEED  IYE H  +GNKWA+IAKLLPGRTDNAIKNHWNS+MR++V
Sbjct:   60 EEDEKVVELVNKYGPKKWSLIAQHLKGRIGKQCRERWHNHLNPHISKSSWTEEEDKLIYEAHKKMGNKWAEIAKLLPGRTDNAIKNHWNSTMRRRV 155
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A5A8EGH2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGH2_CAFRO)

HSP 1 Score: 164 bits (415), Expect = 1.050e-46
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVES 300
            +ED+LVRALV  HGP+ W+ +A HLP R+GKQCRERWHNHL P I K PW  EEDS I+E H  +GNKWA+IA+LLPGRTDNAIKNHWNSSM+KK ES
Sbjct:   28 EEDELVRALVELHGPRNWTAVAEHLPGRIGKQCRERWHNHLNPRISKAPWAREEDSLIFEAHRALGNKWAEIARLLPGRTDNAIKNHWNSSMKKKAES 125
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: B8CFV0_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV0_THAPS)

HSP 1 Score: 155 bits (392), Expect = 1.670e-46
Identity = 67/97 (69.07%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED LV  LV ++G KKWSLIA+HLP R+GKQCRERWHNHL P I +G W+ EED TI + H  +GN+WA+I+KLLPGRTDNAIKNHWNSSM+KK+E
Sbjct:   56 EEDHLVLRLVQKYGAKKWSLIASHLPGRIGKQCRERWHNHLNPGISRGAWSFEEDRTILQFHENVGNRWAEISKLLPGRTDNAIKNHWNSSMKKKIE 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A1L1RYE3_CHICK (Myb-related protein A n=2 Tax=Gallus gallus TaxID=9031 RepID=A0A1L1RYE3_CHICK)

HSP 1 Score: 156 bits (394), Expect = 4.600e-46
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED  V  LV ++GPK+WSLIA HL  R+GKQCRERWHNHL P + K  WTEEED  IYE H  +GN+WA+IAKLLPGRTDN+IKNHWNS+MR+KVE
Sbjct:   93 EEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A8B9FT60_9PSIT (MYB proto-oncogene like 1 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9FT60_9PSIT)

HSP 1 Score: 155 bits (393), Expect = 6.160e-46
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED  V  LV ++GPK+WSLIA HL  R+GKQCRERWHNHL P + K  WTEEED  IYE H  +GN+WA+IAKLLPGRTDN+IKNHWNS+MR+KVE
Sbjct:   90 EEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE 186
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A5A8CZZ6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZZ6_CAFRO)

HSP 1 Score: 164 bits (415), Expect = 6.690e-46
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVES 300
            +ED+LVRALV  HGP+ W+ +A HLP R+GKQCRERWHNHL P I K PW  EEDS I+E H  +GNKWA+IA+LLPGRTDNAIKNHWNSSM+KK ES
Sbjct:   28 EEDELVRALVELHGPRNWTAVAEHLPGRIGKQCRERWHNHLNPRISKAPWAREEDSLIFEAHRALGNKWAEIARLLPGRTDNAIKNHWNSSMKKKAES 125
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BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A663MSR3_ATHCN (MYB proto-oncogene like 1 n=2 Tax=Strigidae TaxID=30459 RepID=A0A663MSR3_ATHCN)

HSP 1 Score: 155 bits (393), Expect = 7.990e-46
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED  V  LV ++GPK+WSLIA HL  R+GKQCRERWHNHL P + K  WTEEED  IYE H  +GN+WA+IAKLLPGRTDN+IKNHWNS+MR+KVE
Sbjct:   91 EEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A8D2J4H8_VARKO (MYB proto-oncogene like 1 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J4H8_VARKO)

HSP 1 Score: 155 bits (393), Expect = 7.990e-46
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED  V  LV ++GPK+WSLIA HL  R+GKQCRERWHNHL P + K  WTEEED  IYE H  +GN+WA+IAKLLPGRTDN+IKNHWNS+MR+KVE
Sbjct:   93 EEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Match: A0A8B9TI56_ANAPL (MYB proto-oncogene like 1 n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9TI56_ANAPL)

HSP 1 Score: 155 bits (393), Expect = 8.220e-46
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 QEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKGPWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVE 297
            +ED  V  LV ++GPK+WSLIA HL  R+GKQCRERWHNHL P + K  WTEEED  IYE H  +GN+WA+IAKLLPGRTDN+IKNHWNS+MR+KVE
Sbjct:   93 EEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72917.17321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2UY60_NAEGR2.070e-4971.43Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A7RPT8_NEMVE2.640e-4771.88Predicted protein (Fragment) n=3 Tax=Nematostella ... [more]
A0A5A8EGH2_CAFRO1.050e-4671.43Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
B8CFV0_THAPS1.670e-4669.07MYB DNA binding protein/ transcription factor-like... [more]
A0A1L1RYE3_CHICK4.600e-4669.07Myb-related protein A n=2 Tax=Gallus gallus TaxID=... [more]
A0A8B9FT60_9PSIT6.160e-4669.07MYB proto-oncogene like 1 n=1 Tax=Amazona collaria... [more]
A0A5A8CZZ6_CAFRO6.690e-4671.43Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A663MSR3_ATHCN7.990e-4669.07MYB proto-oncogene like 1 n=2 Tax=Strigidae TaxID=... [more]
A0A8D2J4H8_VARKO7.990e-4669.07MYB proto-oncogene like 1 n=1 Tax=Varanus komodoen... [more]
A0A8B9TI56_ANAPL8.220e-4669.07MYB proto-oncogene like 1 n=1 Tax=Anas platyrhynch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72917contigM-pyrifera_M_contig72917:164..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7.9e-38
Seed eggNOG ortholog529818.AMSG_05308T0
KEGG koko:K09420,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.5411892-CDS-M-pyrifera_M_contig72917:163..2761622816626.5411892-CDS-M-pyrifera_M_contig72917:163..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72917 164..276 +
1692278085.0664387-CDS-M-pyrifera_M_contig72917:163..2761692278085.0664387-CDS-M-pyrifera_M_contig72917:163..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72917 164..276 +
1622816626.55149-CDS-M-pyrifera_M_contig72917:476..6751622816626.55149-CDS-M-pyrifera_M_contig72917:476..675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72917 477..675 +
1692278085.0780804-CDS-M-pyrifera_M_contig72917:476..6751692278085.0780804-CDS-M-pyrifera_M_contig72917:476..675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72917 477..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72917.17321.1prot_M-pyrifera_M_contig72917.17321.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72917 164..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72917.17321.1

>prot_M-pyrifera_M_contig72917.17321.1 ID=prot_M-pyrifera_M_contig72917.17321.1|Name=mRNA_M-pyrifera_M_contig72917.17321.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
WLQEDDLVRALVWRHGPKKWSLIANHLPQRVGKQCRERWHNHLAPSICKG
PWTEEEDSTIYECHSLIGNKWADIAKLLPGRTDNAIKNHWNSSMRKKVES
GSRE
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mRNA from alignment at M-pyrifera_M_contig72917:164..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72917.17321.1 ID=mRNA_M-pyrifera_M_contig72917.17321.1|Name=mRNA_M-pyrifera_M_contig72917.17321.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=512bp|location=Sequence derived from alignment at M-pyrifera_M_contig72917:164..675+ (Macrocystis pyrifera P11B4 male)
TGGTTGCAGGAAGATGACTTGGTCCGTGCACTTGTATGGAGGCATGGGCC
AAAGAAGTGGTCTTTGATTGCCAACCATTTACCGCAACGCGTCGGAAAGC
AATGCAGAGAGAGGTAAGAAAGAGAAATCATGAAATTGTGGGGTGGGTGG
TGGATGGATGGTGGATAGGAGAGTGGGAAGATGGAGAGAAGGGGGTGGTG
TATTGGGGTGTGGGAGTGAGTGATGTGGAGGGAAAAGGGAAAGGGGTGCA
ATGGGTGGCGGGCTTTGGGTGACATAAACTTCCCCCTGGATTTTTCTATC
ATTTGTTACGCAGATGGCATAATCACCTGGCTCCTTCCATTTGCAAGGGT
CCATGGACGGAAGAGGAGGATTCGACAATTTACGAATGTCACTCGTTAAT
TGGAAACAAATGGGCAGACATTGCAAAGTTGCTTCCTGGACGTACAGACA
ATGCAATTAAGAACCATTGGAATAGTTCTATGCGTAAGAAGGTAGAAAGT
GGCTCGAGAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72917:164..675+

>mRNA_M-pyrifera_M_contig72917.17321.1 ID=mRNA_M-pyrifera_M_contig72917.17321.1|Name=mRNA_M-pyrifera_M_contig72917.17321.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig72917:164..675+ (Macrocystis pyrifera P11B4 male)
TGGTTGCAGGAAGATGACTTGGTCCGTGCACTTGTATGGAGGCATGGGCC
AAAGAAGTGGTCTTTGATTGCCAACCATTTACCGCAACGCGTCGGAAAGC
AATGCAGAGAGAGTGGTTGCAGGAAGATGACTTGGTCCGTGCACTTGTAT
GGAGGCATGGGCCAAAGAAGTGGTCTTTGATTGCCAACCATTTACCGCAA
CGCGTCGGAAAGCAATGCAGAGAGAGATGGCATAATCACCTGGCTCCTTC
CATTTGCAAGGGTCCATGGACGGAAGAGGAGGATTCGACAATTTACGAAT
GTCACTCGTTAATTGGAAACAAATGGGCAGACATTGCAAAGTTGCTTCCT
GGACGTACAGACAATGCAATTAAGAACCATTGGAATAGTTCTATGCGTAA
GAAGGTAGAAAGTGGCTCGAGAGAGATGGCATAATCACCTGGCTCCTTCC
ATTTGCAAGGGTCCATGGACGGAAGAGGAGGATTCGACAATTTACGAATG
TCACTCGTTAATTGGAAACAAATGGGCAGACATTGCAAAGTTGCTTCCTG
GACGTACAGACAATGCAATTAAGAACCATTGGAATAGTTCTATGCGTAAG
AAGGTAGAAAGTGGCTCGAGAGAG
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