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Homology
BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A2E7KFM3_9PLAN (Uncharacterized protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFM3_9PLAN) HSP 1 Score: 285 bits (729), Expect = 8.580e-93 Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 1 Query: 1 AEAEEQLAAASAXXXXXXXXXXXXXXXXXTPSLDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
AEAEEQLAAAS XXXXXXXXXXXXXXX T +LDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLK+EMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP
Sbjct: 230 AEAEEQLAAASXXXXXXXXXXXXXXXXQKTRALDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKKEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 413
BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A518A4U4_9PLAN (Photosystem I assembly protein Ycf3 n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4U4_9PLAN) HSP 1 Score: 144 bits (363), Expect = 3.650e-38 Identity = 117/191 (61.26%), Postives = 127/191 (66.49%), Query Frame = 1 Query: 1 AEAEEQLAAASAXXXXXXXXXXXXXXXXXTPSLDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRT-------VSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
AEAEEQLAAAS XXXXXXXXXXXX + +P QL SLKASADTR QQ E+L KPA +K KLISQVSLK+EM+S APVKV PFR IPD+PAP T TR Q KPVV E KPE EAPLEIN FR LDE+EEE PVIIRISNEVPA EE LFR+P EL+ P
Sbjct: 231 AEAEEQLAAASKEXXXXXXXXXXXX------TQKQPAQLVSLKASADTRTQQLESLTQQKPAVKKEKLISQVSLKKEMKSTAPVKVNPFRNIPDDPAPATTTTRKKPQPAXXXXXQQKPVV---------EQKPE----EAPLEINSFRELDELEEEKPVIIRISNEVPA---AVEKEETLFRSPQELSNP 399
BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A355GHA8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GHA8_9PLAN) HSP 1 Score: 56.6 bits (135), Expect = 3.640e-6 Identity = 53/130 (40.77%), Postives = 66/130 (50.77%), Query Frame = 1 Query: 172 PSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREE--APLEINPFRSLDEI-EEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
PS AP K K+++Q LK+E+ AP +V P + +P N E E Q EE PLEIN FR+LDEI +EE P IIRI +E PA EEPLFRAP EL++P
Sbjct: 303 PSLNAPVK-KMVTQADLKKEL--LAPTQVAPAQSVPVNSN--------------------------ELSAEQQEEEFLEPLEINSFRTLDEISQEEEPAIIRIGHETPA-------EEPLFRAPAELSRP 396
BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A6CDP8_9PLAN (TPR repeat n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CDP8_9PLAN) HSP 1 Score: 56.2 bits (134), Expect = 4.870e-6 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 349 TIPQPKVETKPEPQREE--APLEINPFRSLDEI------EEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
T P ++E + + Q EE PLEIN FRSLDEI +E+ P IIRISNE+PA EEP+FR+P EL P
Sbjct: 316 TTPAARIEPQVQKQEEEFLEPLEINSFRSLDEITDDEITDEDTPAIIRISNEIPA-------EEPMFRSPDELTGP 384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 64.7 |
Seed ortholog evalue | 5.2e-08 |
Seed eggNOG ortholog | 344747.PM8797T_01304 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | repeat protein |
EggNOG OGs | 2J0WF@203682,COG0457@1,COG0457@2 |
COG Functional cat. | S |
Best tax level | Planctomycetes |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 555 |
Cds size | 555 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816626.461996-CDS-M-pyrifera_M_contig72915:560..1115 | 1622816626.461996-CDS-M-pyrifera_M_contig72915:560..1115 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig72915 561..1115 - |
1692278085.0217798-CDS-M-pyrifera_M_contig72915:560..1115 | 1692278085.0217798-CDS-M-pyrifera_M_contig72915:560..1115 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig72915 561..1115 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72915.17320.1 >prot_M-pyrifera_M_contig72915.17320.1 ID=prot_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
AEAEEQLAAASAEKQTQPQTSAKATAPQKTPSLDKPTQLASLKASADTRA QQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVK TATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEE APVIIRISNEVPAQDKTAASEEPLFRAPGELAQP* back to topmRNA from alignment at M-pyrifera_M_contig72915:561..1115- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig72915.17320.1 ID=mRNA_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:561..1115- (Macrocystis pyrifera P11B4 male) GCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAGACACA
GCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTCACTGG
ATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCCGCGCT
CAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAAACCAA
GCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGCGCCGG
TTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGGTTAAA
ACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACCCGGAC
CATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGAAGAGG
CTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAGAGGAA
GCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGATAAGAC
TGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGCACAGC
CATAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig72915:561..1115- >mRNA_M-pyrifera_M_contig72915.17320.1 ID=mRNA_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:561..1115- (Macrocystis pyrifera P11B4 male) GCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAGACACA GCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTCACTGG ATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCCGCGCT CAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAAACCAA GCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGCGCCGG TTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGGTTAAA ACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACCCGGAC CATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGAAGAGG CTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAGAGGAA GCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGATAAGAC TGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGCACAGC CATAAGCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAG ACACAGCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTC ACTGGATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCC GCGCTCAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAA ACCAAGCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGC GCCGGTTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGG TTAAAACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACC CGGACCATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGA AGAGGCTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAG AGGAAGCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGAT AAGACTGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGC ACAGCCATAA back to top
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