mRNA_M-pyrifera_M_contig72905.17315.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72905.17315.1
Unique NamemRNA_M-pyrifera_M_contig72905.17315.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A0U2H196_HUMLU (Cytochrome b6-f complex subunit 4 n=12 Tax=Pentapetalae TaxID=1437201 RepID=A0A0U2H196_HUMLU)

HSP 1 Score: 286 bits (732), Expect = 2.080e-97
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+ NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIENNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
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BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A7M1VHI7_9LAMI (Cytochrome b6-f complex subunit 4 n=7 Tax=asterids TaxID=71274 RepID=A0A7M1VHI7_9LAMI)

HSP 1 Score: 283 bits (723), Expect = 4.890e-96
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGWM  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWMYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
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BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A1X9ZF72_PISVE (Cytochrome b6-f complex subunit 4 n=80 Tax=Pentapetalae TaxID=1437201 RepID=A0A1X9ZF72_PISVE)

HSP 1 Score: 281 bits (720), Expect = 1.400e-95
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGS+GGW+ NNSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSWGGWIYNNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A291LRE0_9ROSI (Cytochrome b6-f complex subunit 4 n=15 Tax=Mesangiospermae TaxID=1437183 RepID=A0A291LRE0_9ROSI)

HSP 1 Score: 281 bits (720), Expect = 1.780e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIYKNSPIQITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A4P8KZ66_PHAVU (Cytochrome b6-f complex subunit 4 n=145 Tax=Mesangiospermae TaxID=1437183 RepID=A0A4P8KZ66_PHAVU)

HSP 1 Score: 281 bits (719), Expect = 1.990e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A0D3LSI5_LONJA (Cytochrome b6-f complex subunit 4 n=6 Tax=Pentapetalae TaxID=1437201 RepID=A0A0D3LSI5_LONJA)

HSP 1 Score: 281 bits (719), Expect = 1.990e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIYQNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A191TFF4_9ERIC (Cytochrome b6-f complex subunit 4 n=192 Tax=Pentapetalae TaxID=1437201 RepID=A0A191TFF4_9ERIC)

HSP 1 Score: 281 bits (719), Expect = 2.210e-95
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    4 MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A3G2Z484_ENSLA (Cytochrome b6-f complex subunit 4 n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A3G2Z484_ENSLA)

HSP 1 Score: 280 bits (715), Expect = 8.110e-95
Identity = 134/141 (95.04%), Postives = 136/141 (96.45%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDP+LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIHKNSPIQITKKPDLNDPILRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A3G2Z3H9_9LILI (Cytochrome b6-f complex subunit 4 n=7 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3G2Z3H9_9LILI)

HSP 1 Score: 280 bits (715), Expect = 8.110e-95
Identity = 135/141 (95.74%), Postives = 136/141 (96.45%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            MSGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFL NVNKFQNPFRRP
Sbjct:    1 MSGSFGGWIHKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRP 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A385CI56_9FABA (Cytochrome b6-f complex subunit 4 n=1 Tax=Ormosia hosiei TaxID=1642859 RepID=A0A385CI56_9FABA)

HSP 1 Score: 280 bits (715), Expect = 8.690e-95
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
            +SGSFGGW+  NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct:    3 VSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2H196_HUMLU2.080e-9797.87Cytochrome b6-f complex subunit 4 n=12 Tax=Pentape... [more]
A0A7M1VHI7_9LAMI4.890e-9697.16Cytochrome b6-f complex subunit 4 n=7 Tax=asterids... [more]
A0A1X9ZF72_PISVE1.400e-9596.45Cytochrome b6-f complex subunit 4 n=80 Tax=Pentape... [more]
A0A291LRE0_9ROSI1.780e-9596.45Cytochrome b6-f complex subunit 4 n=15 Tax=Mesangi... [more]
A0A4P8KZ66_PHAVU1.990e-9596.45Cytochrome b6-f complex subunit 4 n=145 Tax=Mesang... [more]
A0A0D3LSI5_LONJA1.990e-9596.45Cytochrome b6-f complex subunit 4 n=6 Tax=Pentapet... [more]
A0A191TFF4_9ERIC2.210e-9596.45Cytochrome b6-f complex subunit 4 n=192 Tax=Pentap... [more]
A0A3G2Z484_ENSLA8.110e-9595.04Cytochrome b6-f complex subunit 4 n=3 Tax=Petrosav... [more]
A0A3G2Z3H9_9LILI8.110e-9595.74Cytochrome b6-f complex subunit 4 n=7 Tax=Mesangio... [more]
A0A385CI56_9FABA8.690e-9595.74Cytochrome b6-f complex subunit 4 n=1 Tax=Ormosia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72905contigM-pyrifera_M_contig72905:692..1114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score219.5
Seed ortholog evalue7.2e-55
Seed eggNOG ortholog3702.ATCG00730.1
Preferred namepetD
KEGG koko:K02637
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.Cytochrome b6-f complex subunit 4
EggNOG OGs37NKU@33090,3G85T@35493,COG1290@1,KOG4663@2759
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size423
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.280279-UTR-M-pyrifera_M_contig72905:691..7961622816626.280279-UTR-M-pyrifera_M_contig72905:691..796Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72905 692..796 +
1692278084.9304042-UTR-M-pyrifera_M_contig72905:691..7961692278084.9304042-UTR-M-pyrifera_M_contig72905:691..796Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72905 692..796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.2947814-CDS-M-pyrifera_M_contig72905:796..11141622816626.2947814-CDS-M-pyrifera_M_contig72905:796..1114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72905 797..1114 +
1692278084.9442127-CDS-M-pyrifera_M_contig72905:796..11141692278084.9442127-CDS-M-pyrifera_M_contig72905:796..1114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72905 797..1114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72905.17315.1prot_M-pyrifera_M_contig72905.17315.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72905 797..1114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72905.17315.1

>prot_M-pyrifera_M_contig72905.17315.1 ID=prot_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFAT
PLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQ
NPFRRP
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mRNA from alignment at M-pyrifera_M_contig72905:692..1114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72905.17315.1 ID=mRNA_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:692..1114+ (Macrocystis pyrifera P11B4 male)
ATGTCCGGTTCTTTCGGGGGATGGATGTAAAATAATTCACCTATCCTAAT
AACAAAAAAACCTGACTTGAATGATCCTGTGTTAAGAGCTAAATTGGCTA
AAGGGATGGGTCATAATTATTACGGAGAGCCCGCATGGCCAAACGATCTT
TTATATATTTTTCCAGTAGTAATTTTAGGTACTATTGCATGTAACGTAGG
CTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCGGATCCGTTTG
CAACTCCTTTGGAAATATTGCCTGAGTGGTATTTCTTTCCCGTATTTCAA
ATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTC
AGTACCTGCGGGATTATTAACAGTACCCTTTTTGGTGAATGTTAATAAAT
TCCAAAATCCATTTCGTCGTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72905:692..1114+

>mRNA_M-pyrifera_M_contig72905.17315.1 ID=mRNA_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:692..1114+ (Macrocystis pyrifera P11B4 male)
ATGGGTCATAATTATTACGGAGAGCCCGCATGGCCAAACGATCTTTTATA
TATTTTTCCAGTAGTAATTTTAGGTACTATTGCATGTAACGTAGGCTTAG
CGGTTCTAGAACCATCAATGATTGGTGAACCCGCGGATCCGTTTGCAACT
CCTTTGGAAATATTGCCTGAGTGGTATTTCTTTCCCGTATTTCAAATACT
TCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTAC
CTGCGGGATTATTAACAGTACCCTTTTTGGTGAATGTTAATAAATTCCAA
AATCCATTTCGTCGTCCCATGGGTCATAATTATTACGGAGAGCCCGCATG
GCCAAACGATCTTTTATATATTTTTCCAGTAGTAATTTTAGGTACTATTG
CATGTAACGTAGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCC
GCGGATCCGTTTGCAACTCCTTTGGAAATATTGCCTGAGTGGTATTTCTT
TCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTC
TTTTAATGGTTTCAGTACCTGCGGGATTATTAACAGTACCCTTTTTGGTG
AATGTTAATAAATTCCAAAATCCATTTCGTCGTCCC
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