mRNA_M-pyrifera_M_contig72905.17314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72905.17314.1
Unique NamemRNA_M-pyrifera_M_contig72905.17314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72905.17314.1 vs. uniprot
Match: D7KRR2_ARALL (Expressed protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7KRR2_ARALL)

HSP 1 Score: 60.8 bits (146), Expect = 2.240e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = -1 
Query:   34 IHDMIGSDHRKDSLQTNRPIFCMGLTRWLEQRHIFV 141
            IH  +G DHRKDSL+ N+PI CMGLT+WLEQRHI++
Sbjct:   15 IHGSVGYDHRKDSLKVNQPIPCMGLTQWLEQRHIWL 50
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BLAST of mRNA_M-pyrifera_M_contig72905.17314.1 vs. uniprot
Match: A0A4S4EFE9_CAMSI (RPOLD domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4EFE9_CAMSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = -2 
Query:   39 SGLIIEKILFKRTGLSSVWGLRGGWNKDTF 128
            S LIIEKILFKRT LS VWGL  GWNKDTF
Sbjct:  648 SDLIIEKILFKRTSLSFVWGLHSGWNKDTF 677
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BLAST of mRNA_M-pyrifera_M_contig72905.17314.1 vs. uniprot
Match: M1A200_SOLTU (Uncharacterized protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1A200_SOLTU)

HSP 1 Score: 47.0 bits (110), Expect = 7.280e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   37 KNVSLFQPPRKPHTEDRPVRLKRIFSMIR 123
            K VSLFQ P KP+TEDR VRLKRIFSMIR
Sbjct:   10 KCVSLFQSPCKPYTEDRLVRLKRIFSMIR 38
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72905.17314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7KRR2_ARALL2.240e-1169.44Expressed protein n=1 Tax=Arabidopsis lyrata subsp... [more]
A0A4S4EFE9_CAMSI1.460e-783.33RPOLD domain-containing protein n=1 Tax=Camellia s... [more]
M1A200_SOLTU7.280e-682.76Uncharacterized protein n=1 Tax=Solanum tuberosum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72905contigM-pyrifera_M_contig72905:35..175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.2457397-CDS-M-pyrifera_M_contig72905:34..1751622816626.2457397-CDS-M-pyrifera_M_contig72905:34..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72905 35..175 +
1692278084.9184837-CDS-M-pyrifera_M_contig72905:34..1751692278084.9184837-CDS-M-pyrifera_M_contig72905:34..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72905 35..175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72905.17314.1prot_M-pyrifera_M_contig72905.17314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72905 35..175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72905.17314.1

>prot_M-pyrifera_M_contig72905.17314.1 ID=prot_M-pyrifera_M_contig72905.17314.1|Name=mRNA_M-pyrifera_M_contig72905.17314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MPLSICHILIHNKNVSLFQPPRKPHTEDRPVRLKRIFSMIRPDHVVY
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mRNA from alignment at M-pyrifera_M_contig72905:35..175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72905.17314.1 ID=mRNA_M-pyrifera_M_contig72905.17314.1|Name=mRNA_M-pyrifera_M_contig72905.17314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:35..175+ (Macrocystis pyrifera P11B4 male)
ATGCCCTTATCTATCTGCCACATTTTAATTCACAACAAAAATGTGTCTTT
GTTCCAACCACCGCGTAAGCCCCATACAGAAGATAGGCCGGTTCGTTTGA
AGAGAATCTTTTCTATGATCAGACCCGATCATGTCGTGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72905:35..175+

>mRNA_M-pyrifera_M_contig72905.17314.1 ID=mRNA_M-pyrifera_M_contig72905.17314.1|Name=mRNA_M-pyrifera_M_contig72905.17314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:35..175+ (Macrocystis pyrifera P11B4 male)
ATGCCCTTATCTATCTGCCACATTTTAATTCACAACAAAAATGTGTCTTT
GTTCCAACCACCGCGTAAGCCCCATACAGAAGATAGGCCGGTTCGTTTGA
AGAGAATCTTTTCTATGATCAGACCCGATCATGTCGTGTATATGCCCTTA
TCTATCTGCCACATTTTAATTCACAACAAAAATGTGTCTTTGTTCCAACC
ACCGCGTAAGCCCCATACAGAAGATAGGCCGGTTCGTTTGAAGAGAATCT
TTTCTATGATCAGACCCGATCATGTCGTGTAT
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