mRNA_M-pyrifera_M_contig72881.17309.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72881.17309.1
Unique NamemRNA_M-pyrifera_M_contig72881.17309.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A812Q0I0_9DINO (RpmB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0I0_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-16
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRL-LETRKAAGAPATWIESVPSFAAA 294
            +TRR+W+PNAQ  +LWSDIL  +V +R STTALR +  AGGLD YIL TP+  LQS++A+ L+  L  +  E R+ A A A    + PS AAA
Sbjct:   34 KTRRSWKPNAQGVSLWSDILGEKVPLRASTTALRWVDKAGGLDNYILYTPERKLQSKYAVQLKQRLVAVRAEKRRVAAAGAA---TSPSQAAA 123          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A5A8D735_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D735_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-14
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   22 TRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIE 270
            TRR W+PN Q   LWSD LE R+R++V+T AL+ I   GGLD Y++ T  + L +  A  LR  +  ++  R+ AG P TW+E
Sbjct:   17 TRRVWKPNVQWVRLWSDALETRLRLKVTTKALKVIDKRGGLDNYLIHTRPSLLGAGKAQELRRLVSDVMTAREMAGEPTTWLE 99          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A5A8DFF2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DFF2_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 2.510e-14
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   22 TRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIE 270
            TRR W+PN Q   LWSD LE R+R++V+T AL+ I   GGLD Y++ T  + L +  A  LR  +  ++  R+ AG P TW+E
Sbjct:   47 TRRVWKPNVQWVRLWSDALETRLRLKVTTKALKVIDKRGGLDNYLIHTRPSLLGAGKAQELRRLVSDVMTAREMAGEPTTWLE 129          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A2P6TLE9_CHLSO (54S ribosomal mitochondrial n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLE9_CHLSO)

HSP 1 Score: 72.8 bits (177), Expect = 4.030e-14
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIESVPSFAAADTIEA 309
            ++RR W+PNA    L+S +L++ VR+RV+T ALR I  AGG+D YIL+TP   LQS+ A+ LR    R+L       AP   ++++   AAA   EA
Sbjct:   40 KSRRNWKPNAHNKRLYSALLDKMVRLRVTTAALRDIDKAGGIDAYILNTPDKKLQSDVAMDLRA---RMLSAMARQTAPPRGLQTLLPRAAAAAAEA 133          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A0H5R4X5_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4X5_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.560e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIESVPS 282
            RTRR W PN QT  +WSDI+ R +R R++T  LR I  AGG D YIL+T +  L S  A+++R     LLE   A  AP +  E  P+
Sbjct:   64 RTRRCWNPNVQTKRIWSDIMGRSLRFRMTTYVLRCIDKAGGFDEYILNTDEKKLASPLAMSIR---HSLLEKLVADAAPVSEPEDKPA 148          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A8B8P6E9_9MYRT (54S ribosomal protein L24, mitochondrial isoform X1 n=3 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8P6E9_9MYRT)

HSP 1 Score: 71.2 bits (173), Expect = 8.670e-13
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 FCRTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLE 231
            F RTRR+W+PN Q   L+S IL+R +R++V+T ALR I  AGG+D Y+L TP   + +E  L  ++++++L E
Sbjct:   67 FSRTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKSKIEKLYE 139          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A1Y1Z115_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z115_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-12
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATW 264
            +TRR W PN Q   L+S + ++  +I+V+ +ALR I   GGLDRY+L T    L SEF +A++ +L+ LL+ +     P+TW
Sbjct:   40 KTRRRWLPNVQEKQLYSQLHDKMFKIKVTASALRTIDKKGGLDRYLLSTRDDKLYSEFGIAMKRDLEILLQRKGWTKNPSTW 121          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A803R9E6_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803R9E6_CANSA)

HSP 1 Score: 68.9 bits (167), Expect = 2.000e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRL 225
            RTRR W+PN Q   L+S IL+R +R++V+T ALR I  AGG+D Y+L TP   + +E  L  +T++++L
Sbjct:   11 RTRRTWKPNVQDKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYCKMDTETGLFWKTKIEKL 79          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: A0A8J9WMZ3_9CHLO (Probable 50S ribosomal protein L28 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WMZ3_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.860e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIESVPSFAAADTI-EASERS 321
            RTRR WRPN Q+  ++S+ L+R VR+ V+T A+R I   GGLD Y+L+TP   L S+    L+ +++  L  +K  G       S PS A++ T  EA  RS
Sbjct:   36 RTRRIWRPNVQSKAIYSEALDRMVRLNVTTAAMRTIDKYGGLDAYLLETPDEKLASDVGSKLKEQIRAALVKQKQQGQT-----SGPSQASSSTATEAPSRS 132          
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Match: UPI000D62EA8D (uncharacterized protein LOC102626908 isoform X2 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D62EA8D)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   19 RTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDRYILDTPKAHLQSEFALALRTELQRLLE 231
            RTRR W+PN Q   L+S I++R +R++V+T ALR I  AGG+D Y+L TP   + +E  L  +T++++L E
Sbjct:   33 RTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKLYE 103          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72881.17309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Q0I0_9DINO2.530e-1651.61RpmB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A5A8D735_CAFRO1.380e-1444.58Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DFF2_CAFRO2.510e-1444.58Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A2P6TLE9_CHLSO4.030e-1443.3054S ribosomal mitochondrial n=1 Tax=Chlorella soro... [more]
A0A0H5R4X5_9EUKA1.560e-1345.45Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A8B8P6E9_9MYRT8.670e-1345.2154S ribosomal protein L24, mitochondrial isoform X... [more]
A0A1Y1Z115_9FUNG1.080e-1241.46Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A803R9E6_CANSA2.000e-1246.38Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A8J9WMZ3_9CHLO2.860e-1241.18Probable 50S ribosomal protein L28 at N-terminal h... [more]
UPI000D62EA8D3.490e-1245.07uncharacterized protein LOC102626908 isoform X2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72881contigM-pyrifera_M_contig72881:746..1069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog70448.A0A090M6F3
KEGG koko:K02902
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Ribosomal L28 family
EggNOG OGs34ISU@3041,37SJW@33090,COG0227@1,KOG3278@2759
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size324
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.0430176-CDS-M-pyrifera_M_contig72881:745..10691622816626.0430176-CDS-M-pyrifera_M_contig72881:745..1069Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72881 746..1069 -
1692278084.8272452-CDS-M-pyrifera_M_contig72881:745..10691692278084.8272452-CDS-M-pyrifera_M_contig72881:745..1069Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72881 746..1069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72881.17309.1prot_M-pyrifera_M_contig72881.17309.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72881 746..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72881.17309.1

>prot_M-pyrifera_M_contig72881.17309.1 ID=prot_M-pyrifera_M_contig72881.17309.1|Name=mRNA_M-pyrifera_M_contig72881.17309.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MFLVFCRTRRAWRPNAQTATLWSDILERRVRIRVSTTALRRIHAAGGLDR
YILDTPKAHLQSEFALALRTELQRLLETRKAAGAPATWIESVPSFAAADT
IEASERS*
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mRNA from alignment at M-pyrifera_M_contig72881:746..1069-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72881.17309.1 ID=mRNA_M-pyrifera_M_contig72881.17309.1|Name=mRNA_M-pyrifera_M_contig72881.17309.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig72881:746..1069- (Macrocystis pyrifera P11B4 male)
ATGTTTCTTGTTTTCTGCAGGACACGCCGTGCTTGGCGTCCAAACGCACA AACGGCGACGTTGTGGTCGGACATTTTGGAGCGTAGGGTTCGTATTCGCG TTTCAACCACGGCCTTGCGGCGCATTCACGCCGCGGGGGGCCTCGACCGG TACATCCTGGACACCCCCAAGGCGCACCTGCAGTCAGAGTTCGCGCTGGC TCTCCGCACGGAGCTGCAGCGGCTGCTGGAAACGCGGAAAGCGGCCGGGG CACCCGCCACCTGGATTGAGAGCGTCCCCTCCTTCGCCGCAGCAGACACC ATCGAAGCCAGCGAGAGGAGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72881:746..1069-

>mRNA_M-pyrifera_M_contig72881.17309.1 ID=mRNA_M-pyrifera_M_contig72881.17309.1|Name=mRNA_M-pyrifera_M_contig72881.17309.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig72881:746..1069- (Macrocystis pyrifera P11B4 male)
ATGTTTCTTGTTTTCTGCAGGACACGCCGTGCTTGGCGTCCAAACGCACA
AACGGCGACGTTGTGGTCGGACATTTTGGAGCGTAGGGTTCGTATTCGCG
TTTCAACCACGGCCTTGCGGCGCATTCACGCCGCGGGGGGCCTCGACCGG
TACATCCTGGACACCCCCAAGGCGCACCTGCAGTCAGAGTTCGCGCTGGC
TCTCCGCACGGAGCTGCAGCGGCTGCTGGAAACGCGGAAAGCGGCCGGGG
CACCCGCCACCTGGATTGAGAGCGTCCCCTCCTTCGCCGCAGCAGACACC
ATCGAAGCCAGCGAGAGGAGTTGAATGTTTCTTGTTTTCTGCAGGACACG
CCGTGCTTGGCGTCCAAACGCACAAACGGCGACGTTGTGGTCGGACATTT
TGGAGCGTAGGGTTCGTATTCGCGTTTCAACCACGGCCTTGCGGCGCATT
CACGCCGCGGGGGGCCTCGACCGGTACATCCTGGACACCCCCAAGGCGCA
CCTGCAGTCAGAGTTCGCGCTGGCTCTCCGCACGGAGCTGCAGCGGCTGC
TGGAAACGCGGAAAGCGGCCGGGGCACCCGCCACCTGGATTGAGAGCGTC
CCCTCCTTCGCCGCAGCAGACACCATCGAAGCCAGCGAGAGGAGTTGA
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