mRNA_M-pyrifera_M_contig7287.17305.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7287.17305.1
Unique NamemRNA_M-pyrifera_M_contig7287.17305.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 5.510e-59
Identity = 135/163 (82.82%), Postives = 149/163 (91.41%), Query Frame = 2 
Query:    2 HYKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            HYK+G+FEDAVDYYTMALHYCPED+   KDRAV+ ANRAQGHLRL+EY  VVEDCTAALELDP YVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXX L+ +KESV RLEKL  +KNEKMK EA+GKLK+LGN+LLGNFGLS DNFKM+QDP++GSYSINFER
Sbjct:  238 HYKNGEFEDAVDYYTMALHYCPEDEAHKKDRAVFLANRAQGHLRLEEYETVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXSLRLAKESVPRLEKLHNDKNEKMKEEAIGKLKDLGNALLGNFGLSTDNFKMKQDPNTGSYSINFER 400
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A835YHX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.050e-31
Identity = 97/170 (57.06%), Postives = 126/170 (74.12%), Query Frame = 2 
Query:    2 HYKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXK------LQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGS-YSINFER 490
            +Y +  + DA D YT+AL +CP+D+   +++AVYF+NRA  HLRL+++ +VV DCT AL + P YVKALLR XXXXXXXXXXXXXXXXXXXXXX   +      +Q +   + RL+KL  EK E++K EALGKLKELGNSLLG+FGLS+DNFK+ QD   G  Y+I+F +
Sbjct:   18 YYLAKQYLDAADCYTLALEFCPDDEGERENKAVYFSNRAACHLRLEDFQQVVNDCTEALTIKPKYVKALLRRXXXXXXXXXXXXXXXXXXXXXXAPPEEAPPKVVQKALTDIDRLQKLHEEKMEQLKDEALGKLKELGNSLLGHFGLSLDNFKVNQDASGGGGYNISFNK 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A1S3JTY5_LINUN (tetratricopeptide repeat protein 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JTY5_LINUN)

HSP 1 Score: 131 bits (329), Expect = 1.100e-30
Identity = 73/164 (44.51%), Postives = 101/164 (61.59%), Query Frame = 2 
Query:    2 HYKSGDFEDAVDYYTMALHYCPEDDECL-KDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            H+K+ +F+ A+  YT AL  CP    C  K+RA+ ++NRA   L LK+Y K +EDCT ALEL+P+Y+KALLR                              ++E+  RL +  TE+NEKMK E +GKLKELGN +L  FG+S DNFK+QQDP++GSYS+ F++
Sbjct:  126 HFKASEFQLAICSYTQALQTCPL---CFQKERAIMYSNRAACRLHLKQYEKAIEDCTKALELNPNYLKALLRRAEMYEKTEKLDEALEDYKKVIEMDPTQHTAREACIRLPQQITERNEKMKDEMIGKLKELGNMVLKPFGMSTDNFKLQQDPNTGSYSVQFQQ 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A2P5BI17_PARAD (N-terminal acetyltransferase A, auxiliary subunit n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BI17_PARAD)

HSP 1 Score: 130 bits (326), Expect = 1.260e-30
Identity = 88/162 (54.32%), Postives = 114/162 (70.37%), Query Frame = 2 
Query:    5 YKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            Y SG FEDA+  Y +AL   PE    ++ R+   +NRA  +L+L +Y   +++CT ALEL+P Y+KALLR          XXXXXXXXXXXXXXXX    +++S+ RLE L  EK EKMK E +GKLKE+GNSLLG FG+SVDNFK  +DP++GSYSI+F+R
Sbjct:   94 YSSGQFEDALSRYELALELAPEIPSSVEIRSTCHSNRAICYLKLGKYEDTIKECTKALELNPSYLKALLRRGEAHEKLEHXXXXXXXXXXXXXXXXSNDQARKSIRRLEPLAEEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVKDPNTGSYSISFQR 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A484E7C7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7C7_BRELC)

HSP 1 Score: 128 bits (321), Expect = 5.770e-30
Identity = 73/159 (45.91%), Postives = 95/159 (59.75%), Query Frame = 2 
Query:   14 GDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            G + DA++ YT AL  CP ++E   +RAVYF+NRA   LRL    + ++DCT A+ L P YVKALLR                           + A+ +S  RL+K+  E+ EKMKAE L KLK  GN++LG FGLS DNFKM QDP +GSY+INFE+
Sbjct:   90 GSYLDAIECYTTALKLCPSEEEYAYNRAVYFSNRAACLLRLGRTEESIDDCTQAVTLSPTYVKALLRRAEAYEKLDKLEEALADFDAVLKIDPTVPAAVKSHERLQKIVHERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFKMVQDPATGSYNINFEQ 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: G4Z077_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z077_PHYSP)

HSP 1 Score: 127 bits (320), Expect = 1.090e-29
Identity = 73/162 (45.06%), Postives = 95/162 (58.64%), Query Frame = 2 
Query:    5 YKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            +  G F DA++ YT AL  CP +DE   +RAVYF+NRA   LRL    + V+DCT A+ L P YVKALLR                           ++ + +   RL+K+  E+ EKMKAE L KLK  GN++LG FGLS DNF+M QDP +GSYSINF++
Sbjct:   97 FSRGSFLDAIECYTTALKLCPAEDEYAYNRAVYFSNRAACLLRLGRTEESVDDCTQAVTLSPTYVKALLRRAEALEKLDKLEEALADYDAVLKIDPTMRTAVKGHERLQKIVHERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFQMVQDPATGSYSINFQQ 258
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A0M0J422_9EUKA (Tetratricopeptide repeat protein 1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J422_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 1.360e-29
Identity = 72/161 (44.72%), Postives = 97/161 (60.25%), Query Frame = 2 
Query:    2 HYKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINF 484
            H+K+ +++ A+D YT A+   P D+    +RAV+FANRA    ++ E+  VV+DCTAALEL P Y KAL+R                            +    +V+RLEK   EK EK K E LGKLK+LGNS+LG FGLS+DNFK  +DP++GSYSI+F
Sbjct:   52 HFKAQEWDAAIDCYTHAIEVMPPDEP---ERAVFFANRAAAFAKIDEHEGVVDDCTAALELQPQYTKALVRRALAREALDQPTEALEDAKTAAALDPSDKGLVAAVSRLEKASAEKLEKQKEEMLGKLKDLGNSVLGKFGLSLDNFKAVKDPNTGSYSISF 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: D0MSR9_PHYIT (Mitochondrial Protein Translocase (MPT) Family n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0MSR9_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 1.780e-29
Identity = 71/162 (43.83%), Postives = 97/162 (59.88%), Query Frame = 2 
Query:    5 YKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            +  G + DA++ YT AL  CP D+E   +RAVYF+NRA   +RL   ++ V+DCT A+ L P YVKALLR                           ++ + +S  RL+K+  E+ EKMKAE L KLK  GN++LG FGLS DNF+M QDP +GSYS+NF++
Sbjct:   90 FSRGSYLDAIECYTTALKLCPADEEYAYNRAVYFSNRAACLMRLGRTDESVDDCTQAVTLSPTYVKALLRRAEAFEKLDKLEEALADYDAVLKIDPTVRTAVKSHERLQKIVHERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFQMVQDPATGSYSVNFQQ 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: A0A196SEH6_BLAHN (Mitochondrial Protein Translocase (MPT) Family n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SEH6_BLAHN)

HSP 1 Score: 125 bits (313), Expect = 1.860e-29
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 2 
Query:    5 YKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            YK GDFE AV  Y  +L +CP  DE  KDRA++F N A   + LK+Y+  +E  T A+E++P Y+KA  R                               K+   +L K   E+NEK+KAE +GKLKE+GN +LG FG+S+DNFKM QDP +G YSI +E+
Sbjct:   38 YKKGDFEAAVVSYKTSLSFCPLGDEYNKDRAIFFCNMAAAQIELKQYDAAIESATHAVEMNPSYIKAYARRASAYLATEKLDECLADYDKILELDADNTQYKQKRKQLAKQIDERNEKLKAEMIGKLKEVGNKVLGKFGMSLDNFKMVQDPATGGYSIKYEK 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Match: UPI000CECF5A0 (tetratricopeptide repeat protein 1 n=1 Tax=Morus notabilis TaxID=981085 RepID=UPI000CECF5A0)

HSP 1 Score: 126 bits (317), Expect = 3.420e-29
Identity = 85/162 (52.47%), Postives = 115/162 (70.99%), Query Frame = 2 
Query:    5 YKSGDFEDAVDYYTMALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXKLQASKESVTRLEKLQTEKNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER 490
            Y +G FE+A+  Y +AL+  P+    ++ R+   +NRA  +L+L +Y   V++CT ALEL+P Y+KALLR         XXXXXXXXXXXXXXXX     +K+S+ RLE L  +K EKMK E +GKLKE+GNSLLG FG+SVDNFK  +DP++GSYS++F+R
Sbjct:  112 YGNGQFEEALSQYELALYLAPDMPSSVEIRSTCHSNRAICYLKLGKYEDTVKECTKALELNPSYIKALLRRAEAREKLEXXXXXXXXXXXXXXXXPLNDQAKKSIRRLEPLAEQKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVKDPNTGSYSVSFQR 273
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7287.17305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y9_ECTSI5.510e-5982.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHX5_9STRA2.050e-3157.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1S3JTY5_LINUN1.100e-3044.51tetratricopeptide repeat protein 1 n=1 Tax=Lingula... [more]
A0A2P5BI17_PARAD1.260e-3054.32N-terminal acetyltransferase A, auxiliary subunit ... [more]
A0A484E7C7_BRELC5.770e-3045.91Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4Z077_PHYSP1.090e-2945.06Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0M0J422_9EUKA1.360e-2944.72Tetratricopeptide repeat protein 1-like protein n=... [more]
D0MSR9_PHYIT1.780e-2943.83Mitochondrial Protein Translocase (MPT) Family n=3... [more]
A0A196SEH6_BLAHN1.860e-2941.98Mitochondrial Protein Translocase (MPT) Family n=1... [more]
UPI000CECF5A03.420e-2952.47tetratricopeptide repeat protein 1 n=1 Tax=Morus n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7287contigM-pyrifera_M_contig7287:2351..5137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.8e-44
Seed eggNOG ortholog2880.D7G6Y9
Preferred nameTTC1
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4234@1,KOG4234@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011720.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04030
Exons4
Model size1695
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7287.17305.1prot_M-pyrifera_M_contig7287.17305.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7287 2397..3935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.821855-UTR-M-pyrifera_M_contig7287:2350..23961622816625.821855-UTR-M-pyrifera_M_contig7287:2350..2396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7287 2351..2396 +
1692278084.7225866-UTR-M-pyrifera_M_contig7287:2350..23961692278084.7225866-UTR-M-pyrifera_M_contig7287:2350..2396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7287 2351..2396 +
1622816625.8865511-UTR-M-pyrifera_M_contig7287:3935..51371622816625.8865511-UTR-M-pyrifera_M_contig7287:3935..5137Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7287 3936..5137 +
1692278084.771779-UTR-M-pyrifera_M_contig7287:3935..51371692278084.771779-UTR-M-pyrifera_M_contig7287:3935..5137Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7287 3936..5137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.8368669-CDS-M-pyrifera_M_contig7287:2396..24921622816625.8368669-CDS-M-pyrifera_M_contig7287:2396..2492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 2397..2492 +
1692278084.7341104-CDS-M-pyrifera_M_contig7287:2396..24921692278084.7341104-CDS-M-pyrifera_M_contig7287:2396..2492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 2397..2492 +
1622816625.8518405-CDS-M-pyrifera_M_contig7287:2718..28391622816625.8518405-CDS-M-pyrifera_M_contig7287:2718..2839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 2719..2839 +
1692278084.7438698-CDS-M-pyrifera_M_contig7287:2718..28391692278084.7438698-CDS-M-pyrifera_M_contig7287:2718..2839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 2719..2839 +
1622816625.8628244-CDS-M-pyrifera_M_contig7287:3287..34011622816625.8628244-CDS-M-pyrifera_M_contig7287:3287..3401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 3288..3401 +
1692278084.7529705-CDS-M-pyrifera_M_contig7287:3287..34011692278084.7529705-CDS-M-pyrifera_M_contig7287:3287..3401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 3288..3401 +
1622816625.8733263-CDS-M-pyrifera_M_contig7287:3819..39351622816625.8733263-CDS-M-pyrifera_M_contig7287:3819..3935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 3820..3935 +
1692278084.7616925-CDS-M-pyrifera_M_contig7287:3819..39351692278084.7616925-CDS-M-pyrifera_M_contig7287:3819..3935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7287 3820..3935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7287.17305.1

>prot_M-pyrifera_M_contig7287.17305.1 ID=prot_M-pyrifera_M_contig7287.17305.1|Name=mRNA_M-pyrifera_M_contig7287.17305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MALHYCPEDDECLKDRAVYFANRAQGHLRLKEYNKVVEDCTAALELDPHY
VKALLRRAQANEHLEKYDVALEDAKALVEIDPKLQASKESVTRLEKLQTE
KNEKMKAEALGKLKELGNSLLGNFGLSVDNFKMQQDPDSGSYSINFER*
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mRNA from alignment at M-pyrifera_M_contig7287:2351..5137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7287.17305.1 ID=mRNA_M-pyrifera_M_contig7287.17305.1|Name=mRNA_M-pyrifera_M_contig7287.17305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2787bp|location=Sequence derived from alignment at M-pyrifera_M_contig7287:2351..5137+ (Macrocystis pyrifera P11B4 male)
GCACTACAAGAGCGGAGACTTCGAAGACGCGGTGGACTACTACACGATGG
CTTTGCATTACTGTCCCGAGGATGACGAATGCCTGAAGGACAGGGCTGTA
TACTTCGCCAACCGCGCTCAAGGCCACCTTCGCCTCAAGGAGGTGAGCTA
AACGCAAACACCAAGGAGTCAAAGAGCAGCAAGATACAGGCCCAATATCA
ACCCAGAGACTTATCTCTACGCACTTTACCTGATGGGTTTCGTACCTGGC
TTCGACCAAGCGCCTTCAGAACCAGGACGATAACGCCGCCGCCTCAACCC
TCACCACTACTGCTGTATGTACGCTGTATATATGTGCCCACATCGTTTTA
TGTCGTTTTGCGTCGCAGTACAACAAGGTGGTGGAGGACTGCACGGCCGC
ACTGGAACTTGACCCGCACTACGTGAAGGCGCTATTGCGACGGGCGCAAG
CGAATGAGCATCTCGAGAAATACGACGTTGCCCTCGAAGGTCAGTACAGT
TTTGAGCATGGGCAGCTGTTGTGTATTTTCTCCTCTCGGGGTGTTATCTT
CTGCCCTACTGCCCCCCGAACTTCTCGGAGTTGTCGTGGTGAGCGGTGGG
TAATCTGATTTATGGTTGGTGGCGGCCCACACAACATCGCTTCCGACAGC
ACTAGCATTGCCACGTGACTATTGGTGTTGTTTGCACGATAAGCGCATTT
GCCTCAGTCACTCGAGAATCACAGCACCGATCGAGGTCGTTGAGAAAGCC
ATTCCTGCTTTGCGACCAGACAGGATTTCAGGGAAATAAGTTAATGTGAG
AACATCATGATCATCAATTTCCCGGGTATCGTGTGCCAGTAAGTATGTGT
TGACTGTTAGGGAACCACCGCCACAACCCAGATCGTTTGTTTGGTTTTTC
TGTCGATCGTGTTTTCATGCTTGCGTGCTATCCCCAGATGCCAAGGCTCT
AGTGGAAATTGACCCGAAGCTCCAAGCGTCGAAGGAGAGTGTGACGCGCT
TGGAGAAGCTGCAAACTGAGAAGAACGAAAAAATGAAAGCGGAAGCATTG
GGTGAGTTTCATTTCTACCAGTCGCAGTATGATACAAGCACTTTAGCCTA
CGAGGTAATACTGCTGTGCATGTGCATGGGCATGTTTGAGAGCATCAGAA
ACCTTGCCGCGGTGATATTTTTTGACAATGCAGCACGGGTGCACCGTACT
ATTGCATTTTGACGGGCGCGAGGCGTTTACTGTACGAGAGCGTCTTTCAG
TTCGGTGCTATCATGGCCGCATGACCAGTGCTTTGGGTGCGACGAAACCC
TCTTCCATCTTCAGGGGCTTGCGCTGCCTTTCGTTGCTCGTCGTCGCTTG
CATACGTACGGAGTATTGCGGGCAACACATGATAAAACGGGAATCCTGGC
TGTGCAAAGGCCTCTCACAAGGCAAACGTCGCTGACGATCGATCCGGTGT
GCGATGTTCACGTTTACAGGTAAGCTGAAAGAGCTCGGAAATTCCTTGCT
CGGGAACTTCGGGTTGAGCGTGGACAATTTCAAGATGCAGCAGGACCCAG
ATTCTGGCTCGTACAGCATCAACTTTGAGAGATAGGGCGGAGCGCGGTCC
CTTTCTTTTGGTGCAACAACTATCTATGGATAAGACGCCCACGACCGCTC
TTTATTCATACTCCACGTTGGGATAGTTGTTTTTTGTGTTTATTGACGAT
AGTATTGTACCATGTATGCGTTATATTTGGCATGCCGCAGGGCGTGTCGC
TGTCTCGAGCTTGCGTTTTATCTGGTTCAAGTTCGGTTCTTAAGTGTCAT
CCAGCCAGAATGCTGTTGTTGCGGCAGTTTCTCATCGTTGCCGCTGTTTA
GAGGCCGCCCTTTCCTAGGGTTAGGGTTAGTTTTGCTTTAAAACGAGCTC
TAAGAAGAATGTCGGCGATGACTCTACTGGATTGTCCCGGCACCTCTGAA
GCTTCTGTTGCTGGTGATGAGAAGATTGCTTGTCGGCTTGTTGGGGCTAT
CGCCAACCTTCCCGAGTCAGAAGCAGCAGCTGCTGCCAAGGTCTCCCTGT
TTGTTGTTGATTGGTGTTCGTTTTGAAAGTTGTGTGGTAGAATCAGTACT
TGCGAAGAAATGTGCAGTCAAGGGTCTCTACTTTCTACCAGGTACGGGGC
AACTAGTCCCCGGGCGGGTTATGTGTCCCGCTTGAATCCGTTAGCAAGAG
TGTTGGACCTCAAGTCTTCTAGCAGTACTGTATTGCTTCCAGTGTTTTTC
TTCTGGACCTCCAAGCGGTGAAGCCTTATCAATAGGCCATTGTTCGACCG
AAGACATATTATCTTCTACTGTAGACATTAGTTCAATACTCGTGATACCT
GTTGTGTCTGTGGAGTGTATGCCCCTCAGCGTTGAACGTGATGAGCAACG
TTTTCCTGATAATTTAGACCACTAACCTTGCTGTAGGGATAATTGGGCTT
GTTGCACTAAAATGTCAAAACTGTCGTACGTACGAACGTATTATGGTGGT
CTCTGTGGCCTTCTTGTAGTATCGACTGCTAAGACGACAAAAGTGGACCT
CTCGATATCGATACCGTACGTTGATGAGGAGTACCTAGTATGGGCTAGTC
CTCCGCCTGCTTGTTTGTCGGCGATGAGTTTACACACACGTGTACTCCAA
GTCTCCTGTAAGTGTCCCGATGACGCTACGACGGTGTGGGAGAGCAGCCG
GGGGTAGGCACACAGGGATATTTCTGAGTGCCCAATGCAGTTGAAAAAAA
CTGTTGCCTAAATCCAGGCCCCATCAAAAACGTCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7287:2351..5137+

>mRNA_M-pyrifera_M_contig7287.17305.1 ID=mRNA_M-pyrifera_M_contig7287.17305.1|Name=mRNA_M-pyrifera_M_contig7287.17305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig7287:2351..5137+ (Macrocystis pyrifera P11B4 male)
ATGGCTTTGCATTACTGTCCCGAGGATGACGAATGCCTGAAGGACAGGGC
TGTATACTTCGCCAACCGCGCTCAAGGCCACCTTCGCCTCAAGGAGATGG
CTTTGCATTACTGTCCCGAGGATGACGAATGCCTGAAGGACAGGGCTGTA
TACTTCGCCAACCGCGCTCAAGGCCACCTTCGCCTCAAGGAGTACAACAA
GGTGGTGGAGGACTGCACGGCCGCACTGGAACTTGACCCGCACTACGTGA
AGGCGCTATTGCGACGGGCGCAAGCGAATGAGCATCTCGAGAAATACGAC
GTTGCCCTCGAAGTACAACAAGGTGGTGGAGGACTGCACGGCCGCACTGG
AACTTGACCCGCACTACGTGAAGGCGCTATTGCGACGGGCGCAAGCGAAT
GAGCATCTCGAGAAATACGACGTTGCCCTCGAAGATGCCAAGGCTCTAGT
GGAAATTGACCCGAAGCTCCAAGCGTCGAAGGAGAGTGTGACGCGCTTGG
AGAAGCTGCAAACTGAGAAGAACGAAAAAATGAAAGCGGAAGCATTGGAT
GCCAAGGCTCTAGTGGAAATTGACCCGAAGCTCCAAGCGTCGAAGGAGAG
TGTGACGCGCTTGGAGAAGCTGCAAACTGAGAAGAACGAAAAAATGAAAG
CGGAAGCATTGGGTAAGCTGAAAGAGCTCGGAAATTCCTTGCTCGGGAAC
TTCGGGTTGAGCGTGGACAATTTCAAGATGCAGCAGGACCCAGATTCTGG
CTCGTACAGCATCAACTTTGAGAGATAGGTAAGCTGAAAGAGCTCGGAAA
TTCCTTGCTCGGGAACTTCGGGTTGAGCGTGGACAATTTCAAGATGCAGC
AGGACCCAGATTCTGGCTCGTACAGCATCAACTTTGAGAGATAG
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