mRNA_M-pyrifera_M_contig72751.17277.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72751.17277.1
Unique NamemRNA_M-pyrifera_M_contig72751.17277.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: UPI00058CF70A (PKD domain-containing protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI00058CF70A)

HSP 1 Score: 188 bits (477), Expect = 5.690e-53
Identity = 106/185 (57.30%), Postives = 136/185 (73.51%), Query Frame = 1
Query:    7 NWSKYETQVSGE-GDFVIQLLADNCSWVYLDNELIGYQDPSITNTA----YGVSLDGA-HTLSFVIFDGGGLTGGKFRLETTESYGNNPPPPIGEETPVNNAPVANAGPDQTLEATGTTTQVNLTGSATDADGDALTYSWSNGAIDSSTIVNLSLGVHTFTLTVSDGTD--SDTDEVVITIVNES 537
            +W+KY T ++G+ GD+V+Q +ADNCSW+YLD   IG+QD + TN+     Y ++LDG    LSF+IFDGGG  GGKFRLET  SY +N         P N+APVA+AG DQTLEATG TT V LTGS TDADGD LTYSWS+G++ SST V+L +GVH+FTLTV+D TD  +DTDEV++ I + +
Sbjct:  150 SWTKYSTTINGDAGDYVVQFVADNCSWIYLDGNQIGFQDANFTNSGNNGKYPLTLDGTDQELSFIIFDGGGEAGGKFRLETLSSYTDNGGSEDDFGIPSNSAPVADAGTDQTLEATGPTTFVTLTGSGTDADGDNLTYSWSDGSLGSSTTVSLGVGVHSFTLTVAD-TDGATDTDEVIVEITDNT 333          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A350PAS9_9BACT (PLAT domain-containing protein n=3 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PAS9_9BACT)

HSP 1 Score: 180 bits (457), Expect = 3.060e-48
Identity = 103/167 (61.68%), Postives = 122/167 (73.05%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNE------LIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLETTESYGNNPPPPIGEETPVNNAPVANAGPDQTLEATGTTTQVNLTGS-ATDADGDALTYSWS-NGAI---DSSTIVNLSLGVHTF 468
            G NWSKYET+VSG G+FVIQLLADNCSWVYL +E      L+GYQ  + +   YGV+LDG H LSFVIFDGGGL GGKFRLETTE +G  PPP        NNAPVA+AG DQTL ATG TT V L GS ++DADGDAL+YSW+ +G++   D+S   NL+ G +TF
Sbjct:  336 GHNWSKYETEVSGNGEFVIQLLADNCSWVYLADENGDNPRLVGYQGATSSPGEYGVTLDGTHQLSFVIFDGGGLAGGKFRLETTEEFGGTPPP-----IDTNNAPVADAGADQTLTATGATTSVTLDGSGSSDADGDALSYSWTLDGSVVSTDASFSTNLADGSYTF 497          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A2D9FYD1_9BACT (PKD domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FYD1_9BACT)

HSP 1 Score: 171 bits (434), Expect = 1.860e-45
Identity = 109/188 (57.98%), Postives = 127/188 (67.55%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDN------ELIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLETTESYGNNPPPPIGEETPVNNAPVANAGPDQTLEATGTTTQ-VNLTGSAT-DAD-GDALTYSWS-NGAIDS--STIVNLSLGVHTFTLTVSDGTD-SDTDEVVITI 525
            G NWSKYET+V+G GDFV+QLLADNCSWVYL +      +L+GYQ    T   Y V+LDG H L+FVIFDGGGL GGKFRLETTES+G  PPPPI      N APVA+AG  + +EATGTT   V L GS + D D GD L+YSW  NG I +  +T V L +G HT TLTV+D    SDTD   I I
Sbjct:  315 GHNWSKYETEVTGNGDFVVQLLADNCSWVYLADGNGNNPQLVGYQPAVSTPGEYSVTLDGTHKLTFVIFDGGGLAGGKFRLETTESFGGTPPPPI----VTNTAPVADAGEYENVEATGTTNNLVTLDGSNSYDPDEGDELSYSWEVNGEIVNGVTTNVGLPIGEHTVTLTVTDQDGLSDTDTATIII 498          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A2D4ZVN3_9BACT (PKD domain-containing protein (Fragment) n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A2D4ZVN3_9BACT)

HSP 1 Score: 158 bits (400), Expect = 7.180e-41
Identity = 84/128 (65.62%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNE------LIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLETTESYGNNPPPPIGEETPVNNAPVANAGPDQTLEATGTTTQVNLTG 366
            G NWSKYET+VSG G+FVIQLLADNCSWVYL +E      L+GYQ  + +   YGV+LDG H LSFVIFDGGGL GGKFRLETTE +G  PPP        NNAPVA+AG DQTL ATG TT V L G
Sbjct:  344 GHNWSKYETEVSGNGEFVIQLLADNCSWVYLADENGDNPRLVGYQGATSSPGEYGVTLDGTHQLSFVIFDGGGLAGGKFRLETTEEFGGTPPP-----IDTNNAPVADAGADQTLTATGATTSVTLDG 466          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A356X0T4_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356X0T4_9BACT)

HSP 1 Score: 117 bits (293), Expect = 2.320e-27
Identity = 80/156 (51.28%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  223 LETTESYGNNPPPPIGEETPVNNAPVANAGPDQTLEATGTTTQVNLTGS-ATDADGDALTYSWSNGAIDSSTIVNLSLGVHTFTLTVSDGTDSDTDEVVITIVNESPVGDAV--ITAFRLG--TNTVFNGSSSTDPNDTIVSYFWDFGDGSTSSEV 675
            +ET  S+    PP     TPVNNAPVA+AG DQT+ ATG TT V L G+ ++D DGD LTYSWSNGA  ++  VNL+ G  + TLTVSDG +SDTDEV IT+VN  PV +A   IT   LG  T+    GS S    D +  Y W  GD  TS+ V
Sbjct:    1 METASSFDGEVPPTYEPPTPVNNAPVADAGTDQTVTATGQTTAVILDGTGSSDVDGDGLTYSWSNGATGATPTVNLADGTPSLTLTVSDGEESDTDEVTITVVNTIPVANAGQDITKEALGPQTSITLTGSGSDVDGDELT-YVWSTGDMGTSTTV 155          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: UPI00196A507E (hypothetical protein n=1 Tax=Idiomarina mangrovi TaxID=2487133 RepID=UPI00196A507E)

HSP 1 Score: 115 bits (289), Expect = 1.640e-26
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLET 231
            GQNWS+Y  +VSG GDFV+ LLADNCSW+YLD  L+GYQ P      Y VSLDG HTL F+IFDGGGL GG F+LET
Sbjct:  106 GQNWSRYTKEVSGNGDFVLNLLADNCSWIYLDGTLVGYQGPVSVPGEYPVSLDGTHTLDFLIFDGGGLAGGMFQLET 182          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A7Z6ZVV5_9GAMM (Uncharacterized protein n=1 Tax=Pseudidiomarina aestuarii TaxID=624146 RepID=A0A7Z6ZVV5_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 8.390e-26
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLET 231
            G NW++Y T+VSG G FV+ LLADNCSW+Y+D +L+GYQ  + T ++Y V+LDG HTL F+IFDGGGL GG FRLET
Sbjct:  106 GHNWTRYSTEVSGNGQFVLNLLADNCSWIYVDGQLVGYQGLTSTASSYPVTLDGDHTLDFLIFDGGGLAGGMFRLET 182          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A1G0LDK8_9BACT (Uncharacterized protein n=2 Tax=unclassified Gemmatimonadetes TaxID=234665 RepID=A0A1G0LDK8_9BACT)

HSP 1 Score: 114 bits (286), Expect = 9.010e-26
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPSI--TNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLETTESY 243
            G +W+KY T VSG+G +V+QLLADNCSW+YLDN+L G Q  +   TNT Y V+L G HTL+F+IFDGGG  GGKFRLET +S+
Sbjct:   70 GHSWTKYSTPVSGQGRYVVQLLADNCSWIYLDNQLAGVQGAAFDATNTKYEVTLSGNHTLTFIIFDGGGAAGGKFRLETYDSF 152          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A5H2Y453_9GAMM (Uncharacterized protein n=1 Tax=Pseudoalteromonas sp. A25 TaxID=116092 RepID=A0A5H2Y453_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 1.590e-24
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPS--ITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLET 231
            GQNW+KY   V+G+G+FV++LLADNCSWVY+D  L+G+Q  S   +N  Y VSLDG H L F+IFDGGGL GG FRLET
Sbjct:  105 GQNWTKYAVSVTGQGEFVLKLLADNCSWVYIDGTLVGFQSASWSASNITYPVSLDGEHNLEFLIFDGGGLAGGMFRLET 183          
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Match: A0A4R6NYV4_9GAMM (Uncharacterized protein n=1 Tax=Idiomarina aquatica TaxID=1327752 RepID=A0A4R6NYV4_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 3.590e-24
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 QNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPSITNTAYGVSLDGAHTLSFVIFDGGGLTGGKFRLET 231
            QNW++Y  +VSG G+FV+ LLADNCSW+Y+D  L+GYQ    T   Y V+LDG HTL F+IFDGGGL GG FRLET
Sbjct:  112 QNWTRYSKEVSGNGEFVLNLLADNCSWIYIDGTLVGYQPAVSTPGVYPVTLDGDHTLDFIIFDGGGLAGGLFRLET 187          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72751.17277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00058CF70A5.690e-5357.30PKD domain-containing protein n=1 Tax=Gracilimonas... [more]
A0A350PAS9_9BACT3.060e-4861.68PLAT domain-containing protein n=3 Tax=Balneola sp... [more]
A0A2D9FYD1_9BACT1.860e-4557.98PKD domain-containing protein n=1 Tax=Balneola sp.... [more]
A0A2D4ZVN3_9BACT7.180e-4165.63PKD domain-containing protein (Fragment) n=3 Tax=B... [more]
A0A356X0T4_9BACT2.320e-2751.28Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
UPI00196A507E1.640e-2667.53hypothetical protein n=1 Tax=Idiomarina mangrovi T... [more]
A0A7Z6ZVV5_9GAMM8.390e-2663.64Uncharacterized protein n=1 Tax=Pseudidiomarina ae... [more]
A0A1G0LDK8_9BACT9.010e-2662.65Uncharacterized protein n=2 Tax=unclassified Gemma... [more]
A0A5H2Y453_9GAMM1.590e-2463.29Uncharacterized protein n=1 Tax=Pseudoalteromonas ... [more]
A0A4R6NYV4_9GAMM3.590e-2463.16Uncharacterized protein n=1 Tax=Idiomarina aquatic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72751contigM-pyrifera_M_contig72751:242..1111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score190.7
Seed ortholog evalue9.8e-46
Seed eggNOG ortholog1121930.AQXG01000005_gene712
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG2304@1,COG2304@2
COG Functional cat.IU
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.416538-CDS-M-pyrifera_M_contig72751:241..11111622816624.416538-CDS-M-pyrifera_M_contig72751:241..1111Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72751 242..1111 -
1692278083.9045444-CDS-M-pyrifera_M_contig72751:241..11111692278083.9045444-CDS-M-pyrifera_M_contig72751:241..1111Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72751 242..1111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72751.17277.1prot_M-pyrifera_M_contig72751.17277.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72751 242..1111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72751.17277.1

>prot_M-pyrifera_M_contig72751.17277.1 ID=prot_M-pyrifera_M_contig72751.17277.1|Name=mRNA_M-pyrifera_M_contig72751.17277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=290bp
GQNWSKYETQVSGEGDFVIQLLADNCSWVYLDNELIGYQDPSITNTAYGV
SLDGAHTLSFVIFDGGGLTGGKFRLETTESYGNNPPPPIGEETPVNNAPV
ANAGPDQTLEATGTTTQVNLTGSATDADGDALTYSWSNGAIDSSTIVNLS
LGVHTFTLTVSDGTDSDTDEVVITIVNESPVGDAVITAFRLGTNTVFNGS
SSTDPNDTIVSYFWDFGDGSTSSEVVANHSYSISGEYTASLTVTDSFGDS
DTVSTTFIIKGLPFIDYDNDGLFNARDRIIPLWRFRDGEY
back to top

mRNA from alignment at M-pyrifera_M_contig72751:242..1111-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72751.17277.1 ID=mRNA_M-pyrifera_M_contig72751.17277.1|Name=mRNA_M-pyrifera_M_contig72751.17277.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig72751:242..1111- (Macrocystis pyrifera P11B4 male)
GGTCAAAATTGGTCAAAATATGAAACCCAAGTATCTGGTGAAGGTGATTT TGTAATTCAGTTACTCGCTGACAATTGCTCTTGGGTATATCTAGATAATG AACTTATTGGGTATCAGGATCCATCTATTACTAATACAGCGTATGGAGTT TCTTTAGACGGCGCTCACACTCTTTCATTTGTAATCTTTGACGGAGGTGG TTTGACTGGTGGCAAATTCAGGCTAGAGACTACAGAATCTTATGGTAACA ACCCTCCTCCCCCAATTGGTGAGGAAACCCCTGTTAATAATGCTCCAGTA GCTAATGCCGGTCCAGACCAAACATTGGAAGCAACGGGTACAACAACACA AGTTAATCTTACTGGCTCTGCAACAGATGCAGATGGTGATGCGCTTACTT ACTCATGGTCTAATGGAGCCATAGATTCTTCAACTATTGTAAATCTAAGT CTGGGAGTTCATACATTCACTTTAACGGTTTCGGATGGCACAGATTCTGA TACTGATGAAGTAGTTATCACTATTGTGAATGAATCCCCAGTTGGCGATG CTGTAATCACTGCTTTCAGATTGGGAACCAATACCGTATTCAACGGGTCT TCTTCTACCGATCCAAACGATACGATCGTATCTTATTTCTGGGATTTTGG AGATGGATCAACTTCTTCTGAAGTTGTAGCGAATCATAGCTATTCCATTT CGGGTGAATACACCGCTTCTCTTACCGTAACAGATTCTTTTGGCGATTCT GACACCGTTTCTACAACATTTATTATCAAAGGCTTACCTTTTATTGATTA CGATAATGATGGGCTATTTAATGCAAGGGACAGAATCATTCCATTATGGA GATTCAGAGATGGGGAGTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72751:242..1111-

>mRNA_M-pyrifera_M_contig72751.17277.1 ID=mRNA_M-pyrifera_M_contig72751.17277.1|Name=mRNA_M-pyrifera_M_contig72751.17277.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1740bp|location=Sequence derived from alignment at M-pyrifera_M_contig72751:242..1111- (Macrocystis pyrifera P11B4 male)
GGTCAAAATTGGTCAAAATATGAAACCCAAGTATCTGGTGAAGGTGATTT
TGTAATTCAGTTACTCGCTGACAATTGCTCTTGGGTATATCTAGATAATG
AACTTATTGGGTATCAGGATCCATCTATTACTAATACAGCGTATGGAGTT
TCTTTAGACGGCGCTCACACTCTTTCATTTGTAATCTTTGACGGAGGTGG
TTTGACTGGTGGCAAATTCAGGCTAGAGACTACAGAATCTTATGGTAACA
ACCCTCCTCCCCCAATTGGTGAGGAAACCCCTGTTAATAATGCTCCAGTA
GCTAATGCCGGTCCAGACCAAACATTGGAAGCAACGGGTACAACAACACA
AGTTAATCTTACTGGCTCTGCAACAGATGCAGATGGTGATGCGCTTACTT
ACTCATGGTCTAATGGAGCCATAGATTCTTCAACTATTGTAAATCTAAGT
CTGGGAGTTCATACATTCACTTTAACGGTTTCGGATGGCACAGATTCTGA
TACTGATGAAGTAGTTATCACTATTGTGAATGAATCCCCAGTTGGCGATG
CTGTAATCACTGCTTTCAGATTGGGAACCAATACCGTATTCAACGGGTCT
TCTTCTACCGATCCAAACGATACGATCGTATCTTATTTCTGGGATTTTGG
AGATGGATCAACTTCTTCTGAAGTTGTAGCGAATCATAGCTATTCCATTT
CGGGTGAATACACCGCTTCTCTTACCGTAACAGATTCTTTTGGCGATTCT
GACACCGTTTCTACAACATTTATTATCAAAGGCTTACCTTTTATTGATTA
CGATAATGATGGGCTATTTAATGCAAGGGACAGAATCATTCCATTATGGA
GATTCAGAGATGGGGAGTACGGTCAAAATTGGTCAAAATATGAAACCCAA
GTATCTGGTGAAGGTGATTTTGTAATTCAGTTACTCGCTGACAATTGCTC
TTGGGTATATCTAGATAATGAACTTATTGGGTATCAGGATCCATCTATTA
CTAATACAGCGTATGGAGTTTCTTTAGACGGCGCTCACACTCTTTCATTT
GTAATCTTTGACGGAGGTGGTTTGACTGGTGGCAAATTCAGGCTAGAGAC
TACAGAATCTTATGGTAACAACCCTCCTCCCCCAATTGGTGAGGAAACCC
CTGTTAATAATGCTCCAGTAGCTAATGCCGGTCCAGACCAAACATTGGAA
GCAACGGGTACAACAACACAAGTTAATCTTACTGGCTCTGCAACAGATGC
AGATGGTGATGCGCTTACTTACTCATGGTCTAATGGAGCCATAGATTCTT
CAACTATTGTAAATCTAAGTCTGGGAGTTCATACATTCACTTTAACGGTT
TCGGATGGCACAGATTCTGATACTGATGAAGTAGTTATCACTATTGTGAA
TGAATCCCCAGTTGGCGATGCTGTAATCACTGCTTTCAGATTGGGAACCA
ATACCGTATTCAACGGGTCTTCTTCTACCGATCCAAACGATACGATCGTA
TCTTATTTCTGGGATTTTGGAGATGGATCAACTTCTTCTGAAGTTGTAGC
GAATCATAGCTATTCCATTTCGGGTGAATACACCGCTTCTCTTACCGTAA
CAGATTCTTTTGGCGATTCTGACACCGTTTCTACAACATTTATTATCAAA
GGCTTACCTTTTATTGATTACGATAATGATGGGCTATTTAATGCAAGGGA
CAGAATCATTCCATTATGGAGATTCAGAGATGGGGAGTAC
back to top