mRNA_M-pyrifera_M_contig72670.17262.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72670.17262.1
Unique NamemRNA_M-pyrifera_M_contig72670.17262.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72670.17262.1 vs. uniprot
Match: A0A7C2AI32_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2AI32_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 3.330e-17
Identity = 91/256 (35.55%), Postives = 116/256 (45.31%), Query Frame = 1 
Query:   88 PPLVGAGSLGQTPFAARYVYVPVF----FAALGAGLLVRRAPAALALVAVVA--GVFAWRVQVHQATWDGPTAYYERVTEAYPRSPNGFWNLGETLRGRYIDSTAAADGSQGIGDLALLEDAFQAYESASRLLERAAKDATIPKDEL-----DYLQTGIGQAWSYLLQAEVDEYRDFDTPRRILEMLLERV--------LAREAVNRAEGYPRPPLPVEQVFNTLGIVELRAGDRTAAADAFRRALEQDPNYVPAL 798
            P LV  GSLG+ P + R++YVPV     F A+  G L  R  ++LAL+AV A  GV +W      A W      +E      PRS    W LG      Y+   A+       GD   L+ AF A+  A  LLE A +    P  +L     DYLQT +G A  Y ++A+ D Y  + T   ILE L  RV         AREA  R          +E V+  LG     AGD   A  A+R+AL  DP  V AL
Sbjct:  360 PVLVNVGSLGRFPLSDRFLYVPVLGFTTFVAVLFGRLPARGLSSLALLAVGALYGVRSW---TRIAIWRDEKTLFETAVRESPRSAYLQWGLGRV----YLQRLASG------GDPGELKKAFAAFGRAGDLLEEAKR----PGSDLFVTSNDYLQTNLGLAQCYTVEAQKDPYGSYGTSIAILEDLARRVGELEDQTRKAREAGLRVIDLHHR---LELVWAALGTAHRLAGDVEEADSAYRKALSLDPRCVEAL 595
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BLAST of mRNA_M-pyrifera_M_contig72670.17262.1 vs. uniprot
Match: A0A521K950_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K950_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-16
Identity = 86/272 (31.62%), Postives = 118/272 (43.38%), Query Frame = 1 
Query:   10 IGLAVAAWKRSGWGLLITLGFLAALLPPLVGA-GSLGQTPFAARYVYVPVFFAALGAGLLVRRAP-----AALALVAVVAGVFAWRVQVHQATWDGPTAYYERVTEAYPRSPNGFWNLGETLRGRYIDSTAAADGSQGIGDLALLEDAFQAYESASRLLERAAK-DATIPKDELDYLQTGIGQAWSYLLQAEVDEYRDFDTPRRILEMLLERVLAREAVNRAEGYPRPPLPVEQVFNTLGIVELRAGDRTAAADAFRRALEQDPNYVPALRN 804
            +G  V AW R  W  L  L FL A L PL+    SLGQ     R++YV    A +G      RAP       LAL+AV A   + R       W    A +ER     P SP  +W+LG      Y              D A LE + +A+E A  L ERA + D ++     D LQ+ +G  +  L +AE+DEYRD++TPR++ E            N A   P   LP+      L +V  + G+   +     +AL  +P    A RN
Sbjct:  319 LGALVLAWLRRAWTQLAWLLFLVASLAPLLARIESLGQFLLCDRFLYVSCL-AVVGLVATWERAPLRARAGLLALLAVAASALSLR---RIPVWASEQAMFERAIVETPESPYPWWSLGRVRINAYRKGH----------DTAQLEGSLRAFERAQDLCERALRGDGSVFATRADVLQSNLGVGYCLLYEAEIDEYRDWETPRKLFE------------NIAAMRPDSELPLVG----LALVASQRGEFAESERLLAKALSVNPRSAEAQRN 560
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72670.17262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C2AI32_9BACT3.330e-1735.55Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
A0A521K950_9BACT1.900e-1631.62Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72670contigM-pyrifera_M_contig72670:12..1100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1089
Cds size1089
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.9672015-CDS-M-pyrifera_M_contig72670:11..11001622816622.9672015-CDS-M-pyrifera_M_contig72670:11..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72670 12..1100 +
1692278082.8033957-CDS-M-pyrifera_M_contig72670:11..11001692278082.8033957-CDS-M-pyrifera_M_contig72670:11..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72670 12..1100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72670.17262.1prot_M-pyrifera_M_contig72670.17262.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72670 12..1100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72670.17262.1

>prot_M-pyrifera_M_contig72670.17262.1 ID=prot_M-pyrifera_M_contig72670.17262.1|Name=mRNA_M-pyrifera_M_contig72670.17262.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=363bp
ALAIGLAVAAWKRSGWGLLITLGFLAALLPPLVGAGSLGQTPFAARYVYV
PVFFAALGAGLLVRRAPAALALVAVVAGVFAWRVQVHQATWDGPTAYYER
VTEAYPRSPNGFWNLGETLRGRYIDSTAAADGSQGIGDLALLEDAFQAYE
SASRLLERAAKDATIPKDELDYLQTGIGQAWSYLLQAEVDEYRDFDTPRR
ILEMLLERVLAREAVNRAEGYPRPPLPVEQVFNTLGIVELRAGDRTAAAD
AFRRALEQDPNYVPALRNLGLVRLGNGEHALASQLLKRALDLVPDDPDVL
DPYARSLFEEGWPDRALELAEKLARIEPSSPTPATLRGLRAMQRRDFRTA
LNEFDRALEKSPR
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mRNA from alignment at M-pyrifera_M_contig72670:12..1100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72670.17262.1 ID=mRNA_M-pyrifera_M_contig72670.17262.1|Name=mRNA_M-pyrifera_M_contig72670.17262.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at M-pyrifera_M_contig72670:12..1100+ (Macrocystis pyrifera P11B4 male)
GCGCTGGCGATCGGCCTCGCGGTCGCGGCGTGGAAGCGCAGCGGCTGGGG
GCTCCTGATCACGCTCGGCTTCCTCGCCGCGCTGCTGCCGCCGCTGGTTG
GCGCCGGCTCGCTGGGCCAGACGCCGTTCGCGGCGCGCTACGTGTACGTG
CCGGTCTTCTTCGCCGCGCTCGGCGCCGGGTTGTTGGTGCGCCGCGCCCC
CGCGGCGCTCGCGCTCGTCGCCGTCGTAGCGGGCGTCTTCGCGTGGCGCG
TGCAGGTCCACCAGGCGACGTGGGACGGGCCGACCGCCTACTACGAGCGC
GTGACCGAGGCGTACCCGCGCTCGCCGAACGGCTTCTGGAACCTCGGCGA
GACGCTGCGCGGGCGCTACATCGACTCGACGGCGGCGGCCGACGGCAGCC
AGGGCATCGGCGACCTTGCGCTGCTCGAGGACGCGTTCCAGGCCTACGAG
TCCGCGTCGCGGCTGCTCGAGCGGGCGGCCAAGGACGCGACGATCCCCAA
GGACGAGCTCGATTACCTGCAGACCGGCATCGGCCAGGCGTGGAGCTACT
TGTTGCAGGCCGAGGTCGACGAGTACCGCGACTTCGACACGCCGCGGCGG
ATCCTGGAGATGCTGCTCGAGCGCGTGCTCGCGCGCGAGGCGGTCAACCG
CGCCGAGGGCTATCCGCGACCGCCGCTGCCGGTCGAGCAGGTCTTCAACA
CGCTGGGCATCGTCGAGCTGCGCGCGGGCGATCGCACGGCCGCGGCCGAC
GCCTTCCGCCGCGCGCTCGAGCAGGACCCGAACTACGTGCCGGCGCTGCG
CAACCTGGGCCTGGTGCGGCTGGGCAACGGCGAGCACGCGCTGGCGTCGC
AGTTGCTCAAGCGCGCGCTCGACCTGGTGCCCGACGACCCCGACGTGCTC
GACCCGTACGCGCGCAGCCTGTTCGAGGAAGGCTGGCCCGACCGCGCCCT
CGAGCTCGCCGAGAAGCTCGCGCGCATCGAGCCGTCGAGCCCGACGCCCG
CGACGCTGCGCGGGCTGCGCGCGATGCAGCGGCGCGACTTCCGCACTGCA
CTGAACGAGTTCGACCGCGCGCTCGAGAAGAGCCCGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72670:12..1100+

>mRNA_M-pyrifera_M_contig72670.17262.1 ID=mRNA_M-pyrifera_M_contig72670.17262.1|Name=mRNA_M-pyrifera_M_contig72670.17262.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2178bp|location=Sequence derived from alignment at M-pyrifera_M_contig72670:12..1100+ (Macrocystis pyrifera P11B4 male)
GCGCTGGCGATCGGCCTCGCGGTCGCGGCGTGGAAGCGCAGCGGCTGGGG
GCTCCTGATCACGCTCGGCTTCCTCGCCGCGCTGCTGCCGCCGCTGGTTG
GCGCCGGCTCGCTGGGCCAGACGCCGTTCGCGGCGCGCTACGTGTACGTG
CCGGTCTTCTTCGCCGCGCTCGGCGCCGGGTTGTTGGTGCGCCGCGCCCC
CGCGGCGCTCGCGCTCGTCGCCGTCGTAGCGGGCGTCTTCGCGTGGCGCG
TGCAGGTCCACCAGGCGACGTGGGACGGGCCGACCGCCTACTACGAGCGC
GTGACCGAGGCGTACCCGCGCTCGCCGAACGGCTTCTGGAACCTCGGCGA
GACGCTGCGCGGGCGCTACATCGACTCGACGGCGGCGGCCGACGGCAGCC
AGGGCATCGGCGACCTTGCGCTGCTCGAGGACGCGTTCCAGGCCTACGAG
TCCGCGTCGCGGCTGCTCGAGCGGGCGGCCAAGGACGCGACGATCCCCAA
GGACGAGCTCGATTACCTGCAGACCGGCATCGGCCAGGCGTGGAGCTACT
TGTTGCAGGCCGAGGTCGACGAGTACCGCGACTTCGACACGCCGCGGCGG
ATCCTGGAGATGCTGCTCGAGCGCGTGCTCGCGCGCGAGGCGGTCAACCG
CGCCGAGGGCTATCCGCGACCGCCGCTGCCGGTCGAGCAGGTCTTCAACA
CGCTGGGCATCGTCGAGCTGCGCGCGGGCGATCGCACGGCCGCGGCCGAC
GCCTTCCGCCGCGCGCTCGAGCAGGACCCGAACTACGTGCCGGCGCTGCG
CAACCTGGGCCTGGTGCGGCTGGGCAACGGCGAGCACGCGCTGGCGTCGC
AGTTGCTCAAGCGCGCGCTCGACCTGGTGCCCGACGACCCCGACGTGCTC
GACCCGTACGCGCGCAGCCTGTTCGAGGAAGGCTGGCCCGACCGCGCCCT
CGAGCTCGCCGAGAAGCTCGCGCGCATCGAGCCGTCGAGCCCGACGCCCG
CGACGCTGCGCGGGCTGCGCGCGATGCAGCGGCGCGACTTCCGCACTGCA
CTGAACGAGTTCGACCGCGCGCTCGAGAAGAGCCCGCGCGCGCTGGCGAT
CGGCCTCGCGGTCGCGGCGTGGAAGCGCAGCGGCTGGGGGCTCCTGATCA
CGCTCGGCTTCCTCGCCGCGCTGCTGCCGCCGCTGGTTGGCGCCGGCTCG
CTGGGCCAGACGCCGTTCGCGGCGCGCTACGTGTACGTGCCGGTCTTCTT
CGCCGCGCTCGGCGCCGGGTTGTTGGTGCGCCGCGCCCCCGCGGCGCTCG
CGCTCGTCGCCGTCGTAGCGGGCGTCTTCGCGTGGCGCGTGCAGGTCCAC
CAGGCGACGTGGGACGGGCCGACCGCCTACTACGAGCGCGTGACCGAGGC
GTACCCGCGCTCGCCGAACGGCTTCTGGAACCTCGGCGAGACGCTGCGCG
GGCGCTACATCGACTCGACGGCGGCGGCCGACGGCAGCCAGGGCATCGGC
GACCTTGCGCTGCTCGAGGACGCGTTCCAGGCCTACGAGTCCGCGTCGCG
GCTGCTCGAGCGGGCGGCCAAGGACGCGACGATCCCCAAGGACGAGCTCG
ATTACCTGCAGACCGGCATCGGCCAGGCGTGGAGCTACTTGTTGCAGGCC
GAGGTCGACGAGTACCGCGACTTCGACACGCCGCGGCGGATCCTGGAGAT
GCTGCTCGAGCGCGTGCTCGCGCGCGAGGCGGTCAACCGCGCCGAGGGCT
ATCCGCGACCGCCGCTGCCGGTCGAGCAGGTCTTCAACACGCTGGGCATC
GTCGAGCTGCGCGCGGGCGATCGCACGGCCGCGGCCGACGCCTTCCGCCG
CGCGCTCGAGCAGGACCCGAACTACGTGCCGGCGCTGCGCAACCTGGGCC
TGGTGCGGCTGGGCAACGGCGAGCACGCGCTGGCGTCGCAGTTGCTCAAG
CGCGCGCTCGACCTGGTGCCCGACGACCCCGACGTGCTCGACCCGTACGC
GCGCAGCCTGTTCGAGGAAGGCTGGCCCGACCGCGCCCTCGAGCTCGCCG
AGAAGCTCGCGCGCATCGAGCCGTCGAGCCCGACGCCCGCGACGCTGCGC
GGGCTGCGCGCGATGCAGCGGCGCGACTTCCGCACTGCACTGAACGAGTT
CGACCGCGCGCTCGAGAAGAGCCCGCGC
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