mRNA_M-pyrifera_M_contig72602.17253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72602.17253.1
Unique NamemRNA_M-pyrifera_M_contig72602.17253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72602.17253.1 vs. uniprot
Match: A0A1R2D3G6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D3G6_9CILI)

HSP 1 Score: 59.3 bits (142), Expect = 3.840e-6
Identity = 43/156 (27.56%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:  448 DPDGLLAWNVETSIFASRAQECESRTYLDSPALLREAFSCDWELSRTSRLARAPGAYAQLRDRLLASYPLLRETFRAYALSNPSGDPFDAGYGEMLSLWGEAEIDSLLPQSRRGEASAALELAWLSANYESTPSAFNPSDSLMRHEFLEAITRVAL 915
            +P     W +E S+FA+        TY DS   L + F  DW  ++  R+ +      ++++ +   Y  +R+T+R YA    +G  F      +  L  + EI        R    + ++LA  ++ Y  + S+ + +  L+RHEFLE +TRVAL
Sbjct:  457 EPASSFEWIIEKSMFANY-------TY-DSDETLNDCFEFDWSNTKMVRIIKNDSIRDKIKEIIRPYYKFIRKTYRLYAAIGTNGSIFSINLAILTELCQKCEIFD------RNFKISDVDLALKASKY--SKSSISTAYGLVRHEFLEFLTRVAL 596
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72602.17253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1R2D3G6_9CILI3.840e-627.56Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72602contigM-pyrifera_M_contig72602:48..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.6044414-CDS-M-pyrifera_M_contig72602:47..9621622816622.6044414-CDS-M-pyrifera_M_contig72602:47..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72602 48..962 +
1692278082.6287158-CDS-M-pyrifera_M_contig72602:47..9621692278082.6287158-CDS-M-pyrifera_M_contig72602:47..962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72602 48..962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72602.17253.1prot_M-pyrifera_M_contig72602.17253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72602 48..962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72602.17253.1

>prot_M-pyrifera_M_contig72602.17253.1 ID=prot_M-pyrifera_M_contig72602.17253.1|Name=mRNA_M-pyrifera_M_contig72602.17253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=305bp
LTALDLSHNALGPVTGQAIAESLSAAPKSPLRRLFVGFNPLGYESSMAIV
LSLRDHHTLEELGIENTAEEGAIDLAPPRMAQDLWNRARRVNLERHIPAR
VVVEFPPRKRRWDGRADAILDNDEESGESGGSGGMGGGGGSGGGRGSSKD
PDGLLAWNVETSIFASRAQECESRTYLDSPALLREAFSCDWELSRTSRLA
RAPGAYAQLRDRLLASYPLLRETFRAYALSNPSGDPFDAGYGEMLSLWGE
AEIDSLLPQSRRGEASAALELAWLSANYESTPSAFNPSDSLMRHEFLEAI
TRVAL
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mRNA from alignment at M-pyrifera_M_contig72602:48..962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72602.17253.1 ID=mRNA_M-pyrifera_M_contig72602.17253.1|Name=mRNA_M-pyrifera_M_contig72602.17253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=915bp|location=Sequence derived from alignment at M-pyrifera_M_contig72602:48..962+ (Macrocystis pyrifera P11B4 male)
TTAACTGCATTGGATTTGAGCCACAATGCTCTTGGACCTGTGACAGGTCA
AGCCATTGCAGAATCTCTCTCTGCAGCTCCAAAATCTCCTCTGCGACGTC
TCTTTGTGGGCTTCAATCCACTTGGATATGAATCCTCGATGGCAATCGTG
CTTTCTTTACGTGATCATCATACCCTTGAGGAACTCGGCATTGAAAATAC
TGCAGAAGAGGGTGCAATTGATCTTGCACCTCCTCGCATGGCGCAAGATT
TGTGGAACCGCGCAAGACGCGTCAACTTAGAACGGCACATTCCTGCCCGA
GTTGTTGTTGAATTCCCACCCAGAAAAAGAAGGTGGGATGGTAGGGCTGA
TGCAATCCTTGACAATGATGAAGAAAGTGGCGAAAGTGGTGGAAGTGGTG
GAATGGGTGGTGGTGGTGGTAGTGGTGGTGGTAGAGGATCATCGAAAGAT
CCTGATGGATTGTTGGCATGGAATGTGGAGACTTCCATATTTGCAAGTCG
TGCACAAGAGTGTGAAAGTCGCACGTATTTGGACTCTCCTGCATTGTTAC
GTGAAGCCTTTTCCTGTGATTGGGAACTGAGTCGTACCTCACGACTAGCA
AGGGCACCTGGAGCGTATGCTCAGTTGCGAGACCGTCTCCTAGCATCATA
CCCACTACTTCGCGAAACATTCCGTGCCTATGCATTGTCAAACCCTAGCG
GTGATCCGTTTGATGCTGGGTATGGAGAGATGCTCTCTCTTTGGGGAGAG
GCAGAGATTGATTCTTTGTTGCCACAAAGTCGAAGGGGAGAAGCATCTGC
GGCATTGGAGTTGGCATGGCTGTCTGCAAACTATGAATCAACTCCATCTG
CATTCAATCCATCTGATTCCTTGATGCGACATGAATTCTTGGAAGCTATC
ACTCGTGTAGCACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72602:48..962+

>mRNA_M-pyrifera_M_contig72602.17253.1 ID=mRNA_M-pyrifera_M_contig72602.17253.1|Name=mRNA_M-pyrifera_M_contig72602.17253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1830bp|location=Sequence derived from alignment at M-pyrifera_M_contig72602:48..962+ (Macrocystis pyrifera P11B4 male)
TTAACTGCATTGGATTTGAGCCACAATGCTCTTGGACCTGTGACAGGTCA
AGCCATTGCAGAATCTCTCTCTGCAGCTCCAAAATCTCCTCTGCGACGTC
TCTTTGTGGGCTTCAATCCACTTGGATATGAATCCTCGATGGCAATCGTG
CTTTCTTTACGTGATCATCATACCCTTGAGGAACTCGGCATTGAAAATAC
TGCAGAAGAGGGTGCAATTGATCTTGCACCTCCTCGCATGGCGCAAGATT
TGTGGAACCGCGCAAGACGCGTCAACTTAGAACGGCACATTCCTGCCCGA
GTTGTTGTTGAATTCCCACCCAGAAAAAGAAGGTGGGATGGTAGGGCTGA
TGCAATCCTTGACAATGATGAAGAAAGTGGCGAAAGTGGTGGAAGTGGTG
GAATGGGTGGTGGTGGTGGTAGTGGTGGTGGTAGAGGATCATCGAAAGAT
CCTGATGGATTGTTGGCATGGAATGTGGAGACTTCCATATTTGCAAGTCG
TGCACAAGAGTGTGAAAGTCGCACGTATTTGGACTCTCCTGCATTGTTAC
GTGAAGCCTTTTCCTGTGATTGGGAACTGAGTCGTACCTCACGACTAGCA
AGGGCACCTGGAGCGTATGCTCAGTTGCGAGACCGTCTCCTAGCATCATA
CCCACTACTTCGCGAAACATTCCGTGCCTATGCATTGTCAAACCCTAGCG
GTGATCCGTTTGATGCTGGGTATGGAGAGATGCTCTCTCTTTGGGGAGAG
GCAGAGATTGATTCTTTGTTGCCACAAAGTCGAAGGGGAGAAGCATCTGC
GGCATTGGAGTTGGCATGGCTGTCTGCAAACTATGAATCAACTCCATCTG
CATTCAATCCATCTGATTCCTTGATGCGACATGAATTCTTGGAAGCTATC
ACTCGTGTAGCACTTTTAACTGCATTGGATTTGAGCCACAATGCTCTTGG
ACCTGTGACAGGTCAAGCCATTGCAGAATCTCTCTCTGCAGCTCCAAAAT
CTCCTCTGCGACGTCTCTTTGTGGGCTTCAATCCACTTGGATATGAATCC
TCGATGGCAATCGTGCTTTCTTTACGTGATCATCATACCCTTGAGGAACT
CGGCATTGAAAATACTGCAGAAGAGGGTGCAATTGATCTTGCACCTCCTC
GCATGGCGCAAGATTTGTGGAACCGCGCAAGACGCGTCAACTTAGAACGG
CACATTCCTGCCCGAGTTGTTGTTGAATTCCCACCCAGAAAAAGAAGGTG
GGATGGTAGGGCTGATGCAATCCTTGACAATGATGAAGAAAGTGGCGAAA
GTGGTGGAAGTGGTGGAATGGGTGGTGGTGGTGGTAGTGGTGGTGGTAGA
GGATCATCGAAAGATCCTGATGGATTGTTGGCATGGAATGTGGAGACTTC
CATATTTGCAAGTCGTGCACAAGAGTGTGAAAGTCGCACGTATTTGGACT
CTCCTGCATTGTTACGTGAAGCCTTTTCCTGTGATTGGGAACTGAGTCGT
ACCTCACGACTAGCAAGGGCACCTGGAGCGTATGCTCAGTTGCGAGACCG
TCTCCTAGCATCATACCCACTACTTCGCGAAACATTCCGTGCCTATGCAT
TGTCAAACCCTAGCGGTGATCCGTTTGATGCTGGGTATGGAGAGATGCTC
TCTCTTTGGGGAGAGGCAGAGATTGATTCTTTGTTGCCACAAAGTCGAAG
GGGAGAAGCATCTGCGGCATTGGAGTTGGCATGGCTGTCTGCAAACTATG
AATCAACTCCATCTGCATTCAATCCATCTGATTCCTTGATGCGACATGAA
TTCTTGGAAGCTATCACTCGTGTAGCACTT
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