mRNA_M-pyrifera_M_contig7256.17245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7256.17245.1
Unique NamemRNA_M-pyrifera_M_contig7256.17245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.440e-26
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAISV 138
            VCFERKVDCTLVPCGHHCCCL CAAQFEQCPVCRADVEQKIRAISV
Sbjct:  117 VCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 162
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.330e-24
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAISV 138
            VCFERKVDCTLVPCGHHCCCL CAAQFEQCPVCRADVEQKIRAISV
Sbjct:  633 VCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 678
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: D7FYF6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF6_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.700e-16
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAI 132
            VCF+ +VDCTLVPCGHHCCC+ CA++F  CPVCR  V  KI+ I
Sbjct:   40 VCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 83
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAISV 138
            VCF+ +VDCTLVPCGHHCCC+ CA++F  CPVCR  V  KI+ I V
Sbjct:  746 VCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTIPV 791
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.870e-12
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICA-AQFEQCPVCRADVEQKIRAIS 135
            VCF+R V+CT +PCGHHCCC+ CA + F  CPVCR  +++KI+ IS
Sbjct:  927 VCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTIS 972
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A7S3PKV0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKV0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.370e-11
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIR 126
            VCFER +DC   PCGH  CC  CA QF++CPVCRA VEQ ++
Sbjct:  524 VCFERTIDCVFTPCGHISCCHECADQFQECPVCRAKVEQVVK 565
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.140e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICA-AQFEQCPVCRADVEQKIRAIS 135
            VCF+R V+CT VPCGHHCCC+ CA ++   CPVC   +++KI+ IS
Sbjct:  852 VCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTIS 897
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: Q8VX96_PINPS (Putative RING zinc finger protein (Fragment) n=1 Tax=Pinus pinaster TaxID=71647 RepID=Q8VX96_PINPS)

HSP 1 Score: 58.2 bits (139), Expect = 5.340e-10
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRA 129
            +C E++ +   VPCGH CCC  C+++  +CP+CR D+EQ +RA
Sbjct:   35 ICLEQEYNVVFVPCGHMCCCTSCSSRLSECPLCRGDIEQVVRA 77
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A8K0K8Q2_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K8Q2_LADFU)

HSP 1 Score: 61.2 bits (147), Expect = 9.180e-10
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAI 132
            VC +++ +   +PCGH CCC+ C+ +F +CP+CR +VEQKIR I
Sbjct:  283 VCMDKECEVIFIPCGHMCCCISCSEKFTECPMCRGNVEQKIRVI 326
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BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Match: A0A7R9CJV7_TIMPO (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9CJV7_TIMPO)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-9
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAI 132
            VC +   +   VPCGH CCC+ CA    QCP+CRAD+ QK+R I
Sbjct:   82 VCLDNTCEVIFVPCGHMCCCIKCAELVGQCPLCRADINQKVRVI 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7256.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN0_ECTSI4.440e-2697.83Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KTC5_9PHAE8.330e-2497.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF6_ECTSI8.700e-1665.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTY3_9PHAE9.770e-1565.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU5_9PHAE6.870e-1258.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3PKV0_9STRA8.370e-1161.90Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D7FYF4_ECTSI1.140e-1056.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
Q8VX96_PINPS5.340e-1046.51Putative RING zinc finger protein (Fragment) n=1 T... [more]
A0A8K0K8Q2_LADFU9.180e-1050.00Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A7R9CJV7_TIMPO1.100e-952.27Hypothetical protein n=3 Tax=Timema TaxID=61471 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7256contigM-pyrifera_M_contig7256:5465..5605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D8LDN0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Zinc finger, C3HC4 type (RING finger)
EggNOG OGs2E5R0@1,2SCHW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.2442076-CDS-M-pyrifera_M_contig7256:5464..56051622816622.2442076-CDS-M-pyrifera_M_contig7256:5464..5605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7256 5465..5605 +
1692278082.4634695-CDS-M-pyrifera_M_contig7256:5464..56051692278082.4634695-CDS-M-pyrifera_M_contig7256:5464..5605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7256 5465..5605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7256.17245.1prot_M-pyrifera_M_contig7256.17245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7256 5465..5605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7256.17245.1

>prot_M-pyrifera_M_contig7256.17245.1 ID=prot_M-pyrifera_M_contig7256.17245.1|Name=mRNA_M-pyrifera_M_contig7256.17245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
VCFERKVDCTLVPCGHHCCCLICAAQFEQCPVCRADVEQKIRAISV*
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mRNA from alignment at M-pyrifera_M_contig7256:5465..5605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7256.17245.1 ID=mRNA_M-pyrifera_M_contig7256.17245.1|Name=mRNA_M-pyrifera_M_contig7256.17245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig7256:5465..5605+ (Macrocystis pyrifera P11B4 male)
GTATGTTTCGAGAGAAAGGTGGACTGTACGCTGGTCCCCTGCGGCCACCA
CTGCTGCTGCCTCATCTGCGCCGCCCAGTTTGAGCAGTGCCCCGTGTGCC
GCGCCGACGTGGAGCAGAAGATCAGGGCTATCAGCGTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7256:5465..5605+

>mRNA_M-pyrifera_M_contig7256.17245.1 ID=mRNA_M-pyrifera_M_contig7256.17245.1|Name=mRNA_M-pyrifera_M_contig7256.17245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig7256:5465..5605+ (Macrocystis pyrifera P11B4 male)
GTATGTTTCGAGAGAAAGGTGGACTGTACGCTGGTCCCCTGCGGCCACCA
CTGCTGCTGCCTCATCTGCGCCGCCCAGTTTGAGCAGTGCCCCGTGTGCC
GCGCCGACGTGGAGCAGAAGATCAGGGCTATCAGCGTCTAAGTATGTTTC
GAGAGAAAGGTGGACTGTACGCTGGTCCCCTGCGGCCACCACTGCTGCTG
CCTCATCTGCGCCGCCCAGTTTGAGCAGTGCCCCGTGTGCCGCGCCGACG
TGGAGCAGAAGATCAGGGCTATCAGCGTCTAA
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