mRNA_M-pyrifera_M_contig72513.17239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72513.17239.1
Unique NamemRNA_M-pyrifera_M_contig72513.17239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72513.17239.1 vs. uniprot
Match: V4A1S7_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A1S7_LOTGI)

HSP 1 Score: 77.8 bits (190), Expect = 7.160e-13
Identity = 67/220 (30.45%), Postives = 106/220 (48.18%), Query Frame = 1 
Query:   73 PHDAGVMESPLYRAFVGKD---YQQSFVFANNSTRRAQEETYVPVNRSVSWTAIGVKDGEVIELFVETVGRVLDYCSISPPIAS--CNVLNNTLVSVMLKGPHHRLSLEL---FRNREEGIVDDALLLFTDPLPSPPPSPSS-SVLSFSAGYHRLSGQETVSDDVKTIYFAPGAVVEGGLVLGEGCGVVEIIGEGGVMVGTAFPFLSPDFPWALLEMDAG 705
            P   GV+ S  +   V +    +Q SFV+ ++S  R  +   V  NR+VSWT+ G   G+ + + V TV +    C++ P      C  L     S  +     ++S+E    + + +  IVD  LL+F +P  +  P PS+ SVL +    + L GQ  +S +++ +Y APGA V GG         V I G G ++ G  + F  P F W L+ +D G
Sbjct:   23 PVSPGVVSSDKFSVEVKQGSSAFQGSFVYISHSNNRVGQSPSVKPNRTVSWTSFGFT-GDSVNVNVITV-KDFKECTVRPESYGIPCTRLREKTASFEMTSNTQKISVEFDYDYGSLKSDIVDK-LLIFANPPETYVPEPSNPSVLYYGCDVYDLGGQLQLSSNIRHVYLAPGAFVNGGFRT-TSRHPVTISGRG-ILSGAKYRFHDPRFLWGLINVDIG 237
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72513.17239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
V4A1S7_LOTGI7.160e-1330.45Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72513contigM-pyrifera_M_contig72513:405..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size720
Cds size720
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.9618342-CDS-M-pyrifera_M_contig72513:404..11241622816621.9618342-CDS-M-pyrifera_M_contig72513:404..1124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72513 405..1124 +
1692278082.32255-CDS-M-pyrifera_M_contig72513:404..11241692278082.32255-CDS-M-pyrifera_M_contig72513:404..1124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72513 405..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72513.17239.1prot_M-pyrifera_M_contig72513.17239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72513 405..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72513.17239.1

>prot_M-pyrifera_M_contig72513.17239.1 ID=prot_M-pyrifera_M_contig72513.17239.1|Name=mRNA_M-pyrifera_M_contig72513.17239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MPLTFLLLVAPIVAGFINYPPPNLPHDAGVMESPLYRAFVGKDYQQSFVF
ANNSTRRAQEETYVPVNRSVSWTAIGVKDGEVIELFVETVGRVLDYCSIS
PPIASCNVLNNTLVSVMLKGPHHRLSLELFRNREEGIVDDALLLFTDPLP
SPPPSPSSSVLSFSAGYHRLSGQETVSDDVKTIYFAPGAVVEGGLVLGEG
CGVVEIIGEGGVMVGTAFPFLSPDFPWALLEMDAGFGHFV
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mRNA from alignment at M-pyrifera_M_contig72513:405..1124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72513.17239.1 ID=mRNA_M-pyrifera_M_contig72513.17239.1|Name=mRNA_M-pyrifera_M_contig72513.17239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig72513:405..1124+ (Macrocystis pyrifera P11B4 male)
ATGCCTCTCACGTTCCTGCTCCTTGTCGCACCAATTGTGGCTGGATTCAT
AAACTATCCTCCGCCAAACCTTCCACATGATGCTGGTGTGATGGAGTCAC
CTTTGTATCGAGCTTTCGTAGGAAAGGACTACCAACAATCTTTTGTGTTT
GCGAATAACTCGACTCGTAGAGCGCAAGAGGAAACATATGTCCCCGTAAA
TCGTAGTGTGAGTTGGACTGCGATTGGTGTAAAGGATGGAGAGGTGATAG
AATTGTTTGTGGAGACAGTGGGGAGAGTTTTGGATTATTGTTCCATTTCT
CCACCTATCGCGAGTTGCAATGTACTGAATAACACTCTTGTGAGTGTTAT
GCTTAAAGGCCCTCATCATCGACTTTCGTTAGAGTTGTTTCGGAATCGAG
AAGAAGGAATTGTGGATGATGCATTGTTACTCTTCACCGATCCTCTCCCC
TCTCCACCTCCATCTCCTTCCTCCTCCGTCTTATCCTTTTCTGCTGGGTA
TCACCGCCTTTCTGGACAAGAAACAGTATCGGATGATGTGAAGACTATTT
ATTTCGCACCTGGAGCAGTGGTGGAAGGAGGATTGGTATTGGGTGAAGGG
TGTGGAGTAGTGGAGATTATTGGTGAGGGTGGAGTGATGGTTGGCACAGC
GTTCCCTTTCCTCTCTCCAGACTTTCCATGGGCTCTATTGGAAATGGACG
CGGGATTCGGGCATTTTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72513:405..1124+

>mRNA_M-pyrifera_M_contig72513.17239.1 ID=mRNA_M-pyrifera_M_contig72513.17239.1|Name=mRNA_M-pyrifera_M_contig72513.17239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig72513:405..1124+ (Macrocystis pyrifera P11B4 male)
ATGCCTCTCACGTTCCTGCTCCTTGTCGCACCAATTGTGGCTGGATTCAT
AAACTATCCTCCGCCAAACCTTCCACATGATGCTGGTGTGATGGAGTCAC
CTTTGTATCGAGCTTTCGTAGGAAAGGACTACCAACAATCTTTTGTGTTT
GCGAATAACTCGACTCGTAGAGCGCAAGAGGAAACATATGTCCCCGTAAA
TCGTAGTGTGAGTTGGACTGCGATTGGTGTAAAGGATGGAGAGGTGATAG
AATTGTTTGTGGAGACAGTGGGGAGAGTTTTGGATTATTGTTCCATTTCT
CCACCTATCGCGAGTTGCAATGTACTGAATAACACTCTTGTGAGTGTTAT
GCTTAAAGGCCCTCATCATCGACTTTCGTTAGAGTTGTTTCGGAATCGAG
AAGAAGGAATTGTGGATGATGCATTGTTACTCTTCACCGATCCTCTCCCC
TCTCCACCTCCATCTCCTTCCTCCTCCGTCTTATCCTTTTCTGCTGGGTA
TCACCGCCTTTCTGGACAAGAAACAGTATCGGATGATGTGAAGACTATTT
ATTTCGCACCTGGAGCAGTGGTGGAAGGAGGATTGGTATTGGGTGAAGGG
TGTGGAGTAGTGGAGATTATTGGTGAGGGTGGAGTGATGGTTGGCACAGC
GTTCCCTTTCCTCTCTCCAGACTTTCCATGGGCTCTATTGGAAATGGACG
CGGGATTCGGGCATTTTGTGATGCCTCTCACGTTCCTGCTCCTTGTCGCA
CCAATTGTGGCTGGATTCATAAACTATCCTCCGCCAAACCTTCCACATGA
TGCTGGTGTGATGGAGTCACCTTTGTATCGAGCTTTCGTAGGAAAGGACT
ACCAACAATCTTTTGTGTTTGCGAATAACTCGACTCGTAGAGCGCAAGAG
GAAACATATGTCCCCGTAAATCGTAGTGTGAGTTGGACTGCGATTGGTGT
AAAGGATGGAGAGGTGATAGAATTGTTTGTGGAGACAGTGGGGAGAGTTT
TGGATTATTGTTCCATTTCTCCACCTATCGCGAGTTGCAATGTACTGAAT
AACACTCTTGTGAGTGTTATGCTTAAAGGCCCTCATCATCGACTTTCGTT
AGAGTTGTTTCGGAATCGAGAAGAAGGAATTGTGGATGATGCATTGTTAC
TCTTCACCGATCCTCTCCCCTCTCCACCTCCATCTCCTTCCTCCTCCGTC
TTATCCTTTTCTGCTGGGTATCACCGCCTTTCTGGACAAGAAACAGTATC
GGATGATGTGAAGACTATTTATTTCGCACCTGGAGCAGTGGTGGAAGGAG
GATTGGTATTGGGTGAAGGGTGTGGAGTAGTGGAGATTATTGGTGAGGGT
GGAGTGATGGTTGGCACAGCGTTCCCTTTCCTCTCTCCAGACTTTCCATG
GGCTCTATTGGAAATGGACGCGGGATTCGGGCATTTTGTG
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