mRNA_M-pyrifera_M_contig72468.17228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72468.17228.1
Unique NamemRNA_M-pyrifera_M_contig72468.17228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A0A2E7KDW7_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KDW7_9PLAN)

HSP 1 Score: 192 bits (489), Expect = 1.210e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MWSQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            MWSQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS
Sbjct:    1 MWSQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 97
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A0A518ADJ8_9PLAN (EF hand n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADJ8_9PLAN)

HSP 1 Score: 167 bits (423), Expect = 7.770e-49
Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:   16 MFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            MFRFVRYF+P VLLVTFS+DL++AQPGGDSRSRGFMSFLDRNRNGVIEPDEF RMP RF+EMLESAGVDTSRSMTAQEYERVMPR++EQMRS
Sbjct:    1 MFRFVRYFIPFVLLVTFSSDLAFAQPGGDSRSRGFMSFLDRNRNGVIEPDEFQRMPSRFREMLESAGVDTSRSMTAQEYERVMPRILEQMRS 92
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A0A355G8K2_9PLAN (EF-hand domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G8K2_9PLAN)

HSP 1 Score: 145 bits (367), Expect = 2.340e-40
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    7 SQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            S+KMFRF    +P VLLV F ADL+YAQPGGDSRSRGFMSFLDRNRNGVIE  EFD+MPGRFKE LE+AGV+TSR M+ QE+ER+MP+VME+MRS
Sbjct:    4 SKKMFRFATLLIPSVLLVGFCADLAYAQPGGDSRSRGFMSFLDRNRNGVIEASEFDQMPGRFKETLEAAGVNTSRDMSQQEFERIMPQVMERMRS 98
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A6CD27_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CD27_9PLAN)

HSP 1 Score: 143 bits (360), Expect = 2.750e-39
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    7 SQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            S+KMFRF    +P VLLV F  DL+YAQPGGDSRSRGFMSFLDRN+NGVIE  EFD+MPGRFKE LE+AGV+TSR M+ QE+ER+MP+VME+MRS
Sbjct:    4 SKKMFRFTTLLIPSVLLVGFCTDLAYAQPGGDSRSRGFMSFLDRNKNGVIEASEFDQMPGRFKETLEAAGVNTSRDMSQQEFERIMPQVMERMRS 98
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A0A517RMC0_9PLAN (EF hand n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RMC0_9PLAN)

HSP 1 Score: 130 bits (328), Expect = 9.480e-35
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:   16 MFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            MFRF+      V+LV FSADL+YAQPGG+SR+RGF SF+D+N+NGVIE  EFD+MPGRFKE LE  GVDTSRSMT Q++ERVMP++ME+MRS
Sbjct:    1 MFRFISLLSLSVVLVGFSADLAYAQPGGESRTRGFFSFIDKNKNGVIESSEFDQMPGRFKESLEGVGVDTSRSMTQQDFERVMPKLMERMRS 92
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BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: UPI00188549A6 (hypothetical protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=UPI00188549A6)

HSP 1 Score: 113 bits (283), Expect = 4.880e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:  121 MSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            MSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS
Sbjct:    1 MSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 57
[Close]
BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Match: A0A517VR05_9PLAN (EF hand n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VR05_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.910e-22
Identity = 48/92 (52.17%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   16 MFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNGVIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS 291
            MFRF+   +  ++LV    D + AQ   +SR++ FMSF+DRN+NGV+EP EF +MPGR KE LE+AG+DTSRS++ +E+E+++P++ME+MRS
Sbjct:    1 MFRFLSLLLLPLMLVGVKLDQASAQSTDESRTQRFMSFIDRNKNGVMEPAEFAQMPGRLKESLEAAGLDTSRSISQKEFEQILPKLMERMRS 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72468.17228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7KDW7_9PLAN1.210e-58100.00Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A518ADJ8_9PLAN7.770e-4989.13EF hand n=3 Tax=Gimesia panareensis TaxID=2527978 ... [more]
A0A355G8K2_9PLAN2.340e-4075.79EF-hand domain-containing protein n=2 Tax=Planctom... [more]
A6CD27_9PLAN2.750e-3973.68Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A517RMC0_9PLAN9.480e-3569.57EF hand n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517... [more]
UPI00188549A64.880e-30100.00hypothetical protein n=1 Tax=Gimesia benthica TaxI... [more]
A0A517VR05_9PLAN1.910e-2252.17EF hand n=2 Tax=Gimesia aquarii TaxID=2527964 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72468contigM-pyrifera_M_contig72468:835..1125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.1
Seed ortholog evalue3.5e-32
Seed eggNOG ortholog344747.PM8797T_14334
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.EF hand
EggNOG OGs2DTDH@1,33JV0@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.427767-CDS-M-pyrifera_M_contig72468:834..11251622816621.427767-CDS-M-pyrifera_M_contig72468:834..1125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72468 835..1125 +
1692278082.0055516-CDS-M-pyrifera_M_contig72468:834..11251692278082.0055516-CDS-M-pyrifera_M_contig72468:834..1125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72468 835..1125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72468.17228.1prot_M-pyrifera_M_contig72468.17228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72468 835..1125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72468.17228.1

>prot_M-pyrifera_M_contig72468.17228.1 ID=prot_M-pyrifera_M_contig72468.17228.1|Name=mRNA_M-pyrifera_M_contig72468.17228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MWSQKMFRFVRYFVPVVLLVTFSADLSYAQPGGDSRSRGFMSFLDRNRNG
VIEPDEFDRMPGRFKEMLESAGVDTSRSMTAQEYERVMPRVMEQMRS
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mRNA from alignment at M-pyrifera_M_contig72468:835..1125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72468.17228.1 ID=mRNA_M-pyrifera_M_contig72468.17228.1|Name=mRNA_M-pyrifera_M_contig72468.17228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig72468:835..1125+ (Macrocystis pyrifera P11B4 male)
ATGTGGAGCCAGAAAATGTTCCGGTTTGTCCGATATTTCGTTCCAGTTGT
ACTGCTGGTAACGTTCAGTGCTGATCTGTCATATGCGCAGCCTGGTGGAG
ACAGTCGCTCACGAGGGTTCATGTCCTTTCTGGATCGCAACCGCAATGGT
GTCATCGAACCCGATGAATTCGATCGGATGCCGGGACGCTTTAAAGAGAT
GCTCGAATCAGCGGGTGTTGACACCTCCCGCAGCATGACAGCTCAGGAAT
ATGAACGTGTCATGCCACGCGTGATGGAACAGATGCGGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72468:835..1125+

>mRNA_M-pyrifera_M_contig72468.17228.1 ID=mRNA_M-pyrifera_M_contig72468.17228.1|Name=mRNA_M-pyrifera_M_contig72468.17228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig72468:835..1125+ (Macrocystis pyrifera P11B4 male)
ATGTGGAGCCAGAAAATGTTCCGGTTTGTCCGATATTTCGTTCCAGTTGT
ACTGCTGGTAACGTTCAGTGCTGATCTGTCATATGCGCAGCCTGGTGGAG
ACAGTCGCTCACGAGGGTTCATGTCCTTTCTGGATCGCAACCGCAATGGT
GTCATCGAACCCGATGAATTCGATCGGATGCCGGGACGCTTTAAAGAGAT
GCTCGAATCAGCGGGTGTTGACACCTCCCGCAGCATGACAGCTCAGGAAT
ATGAACGTGTCATGCCACGCGTGATGGAACAGATGCGGAGCATGTGGAGC
CAGAAAATGTTCCGGTTTGTCCGATATTTCGTTCCAGTTGTACTGCTGGT
AACGTTCAGTGCTGATCTGTCATATGCGCAGCCTGGTGGAGACAGTCGCT
CACGAGGGTTCATGTCCTTTCTGGATCGCAACCGCAATGGTGTCATCGAA
CCCGATGAATTCGATCGGATGCCGGGACGCTTTAAAGAGATGCTCGAATC
AGCGGGTGTTGACACCTCCCGCAGCATGACAGCTCAGGAATATGAACGTG
TCATGCCACGCGTGATGGAACAGATGCGGAGC
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