mRNA_M-pyrifera_M_contig72468.17227.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72468.17227.1
Unique NamemRNA_M-pyrifera_M_contig72468.17227.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A2E7KE17_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KE17_9PLAN)

HSP 1 Score: 266 bits (680), Expect = 1.360e-79
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 1
Query:    7 MTRKMKFQFFLISVLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            MTRKMKFQFFLISVLSVTFVCSD+VHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQ+
Sbjct:    1 MTRKMKFQFFLISVLSVTFVCSDTVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQA 173          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A518ADK3_9PLAN (Bacterial type II/III secretion system short domain protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADK3_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 2.150e-62
Identity = 149/173 (86.13%), Postives = 155/173 (89.60%), Query Frame = 1
Query:    7 MTRKMKFQFFLISVLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            M R MKF      VL V  +CS SVHSV+ AQEPS  S DRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXX FSGFRGAIGFMV REEIQKELQLTE+QIKQLQEAAQ+MRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWG+LNEKQ+
Sbjct:    1 MNRNMKFHLSFFFVLFVALICSGSVHSVIQAQEPSP-SGDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXXFSGFRGAIGFMVMREEIQKELQLTEEQIKQLQEAAQAMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGVLNEKQT 172          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A3D3R8G4_9PLAN (Uncharacterized protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R8G4_9PLAN)

HSP 1 Score: 134 bits (337), Expect = 3.420e-33
Identity = 106/181 (58.56%), Postives = 120/181 (66.30%), Query Frame = 1
Query:    7 MTRKMKFQFFLISVLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGF--------GXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            M + +KFQFF    L     CSD + S + AQE    SE+RG  GGRR           FGG XXXXXXXXXX X F          X        +  ++ REE+QKELQLT DQIKQL+EAA SMRP+RESMEPFM RMRDAQTDEERTKVREEMSASFEKQR+EGEAK+  LLNEKQ+
Sbjct:    1 MMKNIKFQFFFTIALMGLIPCSDILMSSVQAQE----SENRGDRGGRRDRGG-------FGGXXXXXXXXXXXGXXFXXXXXXXXSRXXXXXXXXXLVSLINREEVQKELQLTSDQIKQLEEAAASMRPTRESMEPFMTRMRDAQTDEERTKVREEMSASFEKQRSEGEAKVMSLLNEKQA 170          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A517RMA4_9PLAN (Bacterial type II/III secretion system short domain protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RMA4_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 4.660e-33
Identity = 101/168 (60.12%), Postives = 114/168 (67.86%), Query Frame = 1
Query:   46 VLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRG--------AIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            +L+ T VC++SVH  L AQEPS D  DR       XXXXXXXXX     R            GFGXX                IGF+V RE++QKELQLTE+QIKQLQEAAQ +RPSRE MEPFM RMR+AQTDEERTKVREEM A+F+KQRTEGEAKL GLLNEKQ+
Sbjct:   14 LLTGTLVCTESVHHSLQAQEPS-DQPDRSXXXXXXXXXXXXXXXXXXXPRG-----------GFGXXXXXXXXXXXXXXXXXGIGFLVIREDVQKELQLTEEQIKQLQEAAQGLRPSREMMEPFMTRMREAQTDEERTKVREEMGAAFQKQRTEGEAKLMGLLNEKQA 169          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A517WSU6_9PLAN (Bacterial type II/III secretion system short domain protein n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WSU6_9PLAN)

HSP 1 Score: 125 bits (314), Expect = 4.200e-30
Identity = 89/160 (55.62%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   46 VLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRXXXXXXXXXSRFGGRXXXXXXXXXXXXGFGXXGFSGFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            +L    VCSDSVH  L AQ+P     DRGGFG   XXXXXXXXX                               IG +V RE +QKELQLTEDQIK+L E AQ +RP+RE +EPFMNRMR+AQTDEER+K+REEM + FEK+R EGEAKL+GLLNEKQ+
Sbjct:   14 ILVALIVCSDSVHQSLQAQQPGG-RPDRGGFGXXXXXXXXXXXXXXX---------------------XXXXXXDIGSLVAREAVQKELQLTEDQIKKLSEVAQELRPNRELVEPFMNRMREAQTDEERSKIREEMGSVFEKRRKEGEAKLFGLLNEKQA 151          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A355G6I7_9PLAN (Secretin_N domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G6I7_9PLAN)

HSP 1 Score: 124 bits (312), Expect = 7.540e-30
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1
Query:  280 MVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            +V REE+QKELQLT DQIKQL+EAA SMRP+RESMEPFM R+R+AQTDEERTKVREEM ASFEKQRTEGEAK+  LLNEKQ+
Sbjct:   91 LVNREEVQKELQLTPDQIKQLEEAAASMRPTRESMEPFMTRLREAQTDEERTKVREEMGASFEKQRTEGEAKMMSLLNEKQA 172          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A2E2C7J4_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7J4_9PLAN)

HSP 1 Score: 124 bits (312), Expect = 7.810e-30
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1
Query:  280 MVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQS 525
            +V REE+QKELQLT DQIKQL+EAA SMRP+RESMEPFM R+R+AQTDEERTKVREEM ASFEKQRTEGEAK+  LLNEKQ+
Sbjct:   88 LVNREEVQKELQLTPDQIKQLEEAAASMRPTRESMEPFMTRLREAQTDEERTKVREEMGASFEKQRTEGEAKMMSLLNEKQA 169          
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Match: A0A7W0M7U3_9PLAN (Spy/CpxP family protein refolding chaperone n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M7U3_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 4.150e-5
Identity = 29/89 (32.58%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  256 GFRGAIGFMVTREEIQKELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMSASFEKQRTEGEAKLWGLLNEKQ 522
            G RG +  ++ R+E+++ L LTE+Q  ++ E     RP R +++P+  ++++A+T+E++  VREE++A+  K R + EA +  +L+ +Q
Sbjct:   34 GERGGLLSLLRRDEVKESLGLTEEQAAKITELEAQSRPGRGALDPYFEKLKNAETEEQKNVVREELNAAAAKFRQDAEAGVRAVLSPEQ 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72468.17227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2E7KE17_9PLAN1.360e-7998.84Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A518ADK3_9PLAN2.150e-6286.13Bacterial type II/III secretion system short domai... [more]
A0A3D3R8G4_9PLAN3.420e-3358.56Uncharacterized protein n=7 Tax=Gimesia TaxID=1649... [more]
A0A517RMA4_9PLAN4.660e-3360.12Bacterial type II/III secretion system short domai... [more]
A0A517WSU6_9PLAN4.200e-3055.63Bacterial type II/III secretion system short domai... [more]
A0A355G6I7_9PLAN7.540e-3081.71Secretin_N domain-containing protein (Fragment) n=... [more]
A0A2E2C7J4_9PLAN7.810e-3081.71Uncharacterized protein n=5 Tax=Planctomycetaceae ... [more]
A0A7W0M7U3_9PLAN4.150e-532.58Spy/CpxP family protein refolding chaperone n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72468contigM-pyrifera_M_contig72468:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.7
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog344747.PM8797T_14329
KEGG koko:K02453
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Bacterial type II/III secretion system short domain
EggNOG OGs2IYKG@203682,COG1450@1,COG1450@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size525
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.37752-CDS-M-pyrifera_M_contig72468:0..5191622816621.37752-CDS-M-pyrifera_M_contig72468:0..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72468 1..519 -
1692278081.9804144-CDS-M-pyrifera_M_contig72468:0..5191692278081.9804144-CDS-M-pyrifera_M_contig72468:0..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72468 1..519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.3895469-UTR-M-pyrifera_M_contig72468:519..5251622816621.3895469-UTR-M-pyrifera_M_contig72468:519..525Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72468 520..525 -
1692278081.993493-UTR-M-pyrifera_M_contig72468:519..5251692278081.993493-UTR-M-pyrifera_M_contig72468:519..525Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72468 520..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72468.17227.1prot_M-pyrifera_M_contig72468.17227.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72468 1..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72468.17227.1

>prot_M-pyrifera_M_contig72468.17227.1 ID=prot_M-pyrifera_M_contig72468.17227.1|Name=mRNA_M-pyrifera_M_contig72468.17227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MTRKMKFQFFLISVLSVTFVCSDSVHSVLLAQEPSSDSEDRGGFGGRRDR
GGFGGDRSRFGGRGGFGGDRGGFRGGFGGGGFSGFRGAIGFMVTREEIQK
ELQLTEDQIKQLQEAAQSMRPSRESMEPFMNRMRDAQTDEERTKVREEMS
ASFEKQRTEGEAKLWGLLNEKQS
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mRNA from alignment at M-pyrifera_M_contig72468:1..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72468.17227.1 ID=mRNA_M-pyrifera_M_contig72468.17227.1|Name=mRNA_M-pyrifera_M_contig72468.17227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig72468:1..525- (Macrocystis pyrifera P11B4 male)
TTAAATATGACTCGTAAAATGAAATTCCAGTTCTTCCTGATTAGCGTACT CTCTGTCACATTTGTGTGTTCAGATTCTGTACACTCAGTGCTTCTTGCCC AGGAACCTTCCAGTGACTCTGAAGACCGAGGTGGTTTTGGAGGCCGACGG GACCGCGGAGGCTTCGGCGGTGACCGAAGTCGCTTTGGTGGCAGAGGTGG ATTCGGAGGCGACCGAGGCGGTTTTCGCGGTGGGTTTGGCGGAGGTGGTT TTAGCGGCTTCCGCGGAGCGATTGGCTTCATGGTGACGCGGGAAGAGATT CAGAAAGAACTCCAGCTCACCGAAGATCAGATCAAACAGCTCCAGGAAGC AGCCCAGTCAATGCGTCCCAGTCGCGAGTCGATGGAACCCTTCATGAACC GCATGCGGGATGCCCAGACCGACGAAGAGCGGACCAAAGTCCGCGAAGAA ATGAGTGCTTCCTTTGAAAAACAGCGCACGGAAGGCGAAGCCAAACTCTG GGGGCTCCTGAATGAAAAGCAGTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72468:1..525-

>mRNA_M-pyrifera_M_contig72468.17227.1 ID=mRNA_M-pyrifera_M_contig72468.17227.1|Name=mRNA_M-pyrifera_M_contig72468.17227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig72468:1..525- (Macrocystis pyrifera P11B4 male)
ATGACTCGTAAAATGAAATTCCAGTTCTTCCTGATTAGCGTACTCTCTGT
CACATTTGTGTGTTCAGATTCTGTACACTCAGTGCTTCTTGCCCAGGAAC
CTTCCAGTGACTCTGAAGACCGAGGTGGTTTTGGAGGCCGACGGGACCGC
GGAGGCTTCGGCGGTGACCGAAGTCGCTTTGGTGGCAGAGGTGGATTCGG
AGGCGACCGAGGCGGTTTTCGCGGTGGGTTTGGCGGAGGTGGTTTTAGCG
GCTTCCGCGGAGCGATTGGCTTCATGGTGACGCGGGAAGAGATTCAGAAA
GAACTCCAGCTCACCGAAGATCAGATCAAACAGCTCCAGGAAGCAGCCCA
GTCAATGCGTCCCAGTCGCGAGTCGATGGAACCCTTCATGAACCGCATGC
GGGATGCCCAGACCGACGAAGAGCGGACCAAAGTCCGCGAAGAAATGAGT
GCTTCCTTTGAAAAACAGCGCACGGAAGGCGAAGCCAAACTCTGGGGGCT
CCTGAATGAAAAGCAGTCAATGACTCGTAAAATGAAATTCCAGTTCTTCC
TGATTAGCGTACTCTCTGTCACATTTGTGTGTTCAGATTCTGTACACTCA
GTGCTTCTTGCCCAGGAACCTTCCAGTGACTCTGAAGACCGAGGTGGTTT
TGGAGGCCGACGGGACCGCGGAGGCTTCGGCGGTGACCGAAGTCGCTTTG
GTGGCAGAGGTGGATTCGGAGGCGACCGAGGCGGTTTTCGCGGTGGGTTT
GGCGGAGGTGGTTTTAGCGGCTTCCGCGGAGCGATTGGCTTCATGGTGAC
GCGGGAAGAGATTCAGAAAGAACTCCAGCTCACCGAAGATCAGATCAAAC
AGCTCCAGGAAGCAGCCCAGTCAATGCGTCCCAGTCGCGAGTCGATGGAA
CCCTTCATGAACCGCATGCGGGATGCCCAGACCGACGAAGAGCGGACCAA
AGTCCGCGAAGAAATGAGTGCTTCCTTTGAAAAACAGCGCACGGAAGGCG
AAGCCAAACTCTGGGGGCTCCTGAATGAAAAGCAGTCA
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