mRNA_M-pyrifera_M_contig72433.17222.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: UPI0008347F52 (NERD domain-containing protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008347F52) HSP 1 Score: 71.6 bits (174), Expect = 4.050e-12 Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDET--KRRLVYVGMTRATDHLMLALHGSGQIIDDLLAA 360 HD G PW++MAVL + + + +P L+ + R + + V+V T+ KGLEF V + ++ + P D++ + R++YVGMTRA DHL++ H G +D + +A Sbjct: 478 HDSGIPWREMAVLYRRNKSADAIASALDEAAIPHEALASRRKRSAFDANTETVKVLTMHSSKGLEFRAVAIPGINRM---PLKDEDPTEEARVLYVGMTRAMDHLLITGHDKGGFLDQIRSA 596
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A3B1BA54_9ZZZZ (DNA helicase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1BA54_9ZZZZ) HSP 1 Score: 68.6 bits (166), Expect = 3.050e-11 Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDETKRRLVYVGMTRATDHLMLALHGSGQIIDDLLAAA 363 H QG PW +MAVL +G+ + A + +P+A L K + + D V V ++ KGLEF RV ++ +D V + E RL+YVGMTRA + L++ G + +L A Sbjct: 184 HKQGVPWGEMAVLYIDGSGGHAISAQLKKAAIPYAWLGSKKYKSAYNPDLDQVTVLSVYSSKGLEFSRVIMLGIDQVDDSED-NQEDGARLLYVGMTRAQECLLVTSSGMNKYTQRVLEVA 303
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A385Z769_9PSED (DNA helicase n=2 Tax=Pseudomonas cavernae TaxID=2320867 RepID=A0A385Z769_9PSED) HSP 1 Score: 62.4 bits (150), Expect = 6.990e-9 Identity = 41/124 (33.06%), Postives = 59/124 (47.58%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERV---YLVSLDHVYAGPGADDETKRRLVYVGMTRATDHLMLALHGSGQIIDDLLAAA 363 H Q W ++AVL + + + G+P ++ K ++ D V+V T+ KGLEF+ V ++ L H A AD+ RL+YVGMTRATDHL+L S L A Sbjct: 475 HGQLGDWSQLAVLGRTNDDNVSIVRALQQAGIPVEQVNSKGNNTALDPGADSVKVVTLHSSKGLEFDSVAIPFIGRLPHAKAKSVADEA---RLLYVGMTRATDHLLLTASQSSPFTQRLREVA 595
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A0C4WQJ0_9GAMM (DNA helicase n=3 Tax=Azotobacter chroococcum TaxID=353 RepID=A0A0C4WQJ0_9GAMM) HSP 1 Score: 62.4 bits (150), Expect = 6.990e-9 Identity = 42/115 (36.52%), Postives = 55/115 (47.83%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDET--KRRLVYVGMTRATDHLMLALHGSGQI 339 H +G W+ MAVL G A + + G+P A L S E D V + TI KGLEF RV L+ V G AD + RL+YVG+TRA L++ H S + Sbjct: 477 HAEGVAWKDMAVLYPGGGAGQAMGEALAELGIPHAWLG--SGEACCAET-DQVAIMTIHGSKGLEFSRVVLLDASFVAPGEEADSSLPERMRLLYVGITRARQQLLVGFHRSNAV 588
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A0T5ZAD6_9GAMM (DNA helicase n=3 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=A0A0T5ZAD6_9GAMM) HSP 1 Score: 62.0 bits (149), Expect = 9.560e-9 Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDETKR----RLVYVGMTRATDHLML 315 H QG PW+ MAVL GN V A +P L K + + D V V TI KGLEF RV ++ + G D++ ++ RL+YVGMTRA + L++ Sbjct: 498 HQQGVPWRDMAVLYAAGNQGHGVAAQLRVADIPHVWLGSKQYKSTYDPGDDRVTVLTIHSSKGLEFSRVIILGI-----GQLGDEQARQPQNARLLYVGMTRAQECLLV 601
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A139SNL0_9GAMM (DNA helicase n=2 Tax=Ventosimonas gracilis TaxID=1680762 RepID=A0A139SNL0_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 1.300e-8 Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1 Query: 28 MAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDET---KRRLVYVGMTRATDHLMLALHGSGQIIDDLLA 357 MAVL G A ++ + +P L + RK D + + TI KGLEF V L+ + G DD RL+YVGMTRAT+ L+L+ H ++ LLA Sbjct: 1 MAVLYPGGEAGHNMEQALQQAAIPCIWLKDSKTRKDYRVDEDKIPIMTIHSSKGLEFSTVVLLDASFI-PGKEIDDAALTAAMRLLYVGMTRATERLLLSFHRDNELAKALLA 112
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A367FCC4_9ACTN (DNA helicase n=2 Tax=Streptomyces diacarni TaxID=2800381 RepID=A0A367FCC4_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 1.340e-8 Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNG-NARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSL-----------DHVYAGPGA---DDETKRRLVYVGMTRATDHLMLALHG 327 HD G P+ MAV V +G +A++ +A VP +L + AR D VR+ T+ + KGLEF+RV+L S+ + +A P +++ R L++V TRA D L+++ +G Sbjct: 646 HDHGTPYSAMAVSVPDGRSAQEFANVLAREFDVPAVELGKDGARSG----ADAVRIGTMHRFKGLEFQRVFLTSVGEGRVPDQRIEQYRHANPQRYRQEEQRARSLLFVAATRARDELIVSWNG 765
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A4U1KFV5_9GAMM (DNA helicase n=5 Tax=Azotobacter chroococcum TaxID=353 RepID=A0A4U1KFV5_9GAMM) HSP 1 Score: 60.1 bits (144), Expect = 4.500e-8 Identity = 40/115 (34.78%), Postives = 55/115 (47.83%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGADDET--KRRLVYVGMTRATDHLMLALHGSGQI 339 H +G W+ MAVL +G A + + G+P L S E D V + TI KGLEF RV L+ V G AD + RL+YVG+TRA L++ H + + Sbjct: 477 HAEGVAWRDMAVLYPDGGAGRAMGEALAALGIPHVWLG--SGEACCAET-DQVAIMTIHGSKGLEFSRVVLLDASFVAQGEEADSSLPERMRLLYVGITRARQQLLVGFHRNNAV 588
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A154QH75_9GAMM (DNA helicase n=19 Tax=Rhodanobacteraceae TaxID=1775411 RepID=A0A154QH75_9GAMM) HSP 1 Score: 60.1 bits (144), Expect = 4.510e-8 Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 1 HDQGCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHV-YAGPGADDETKRRLVYVGMTRATDHLMLALH 324 H G P+ +MAV+ N + + V G+P + L++ + ++++ + D V++ T+ KGLEF V + + + G G +DE RL+YV MTRATDHL+L H Sbjct: 482 HAHGRPYSEMAVIYRNQWEGEKLHEVLRELGIP-SRLADNAGKQTLFVVEDSVKLVTMHSSKGLEFPFVIIPGIGGLPKEGQGENDEA--RLLYVAMTRATDHLLLIHH 587
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Match: A0A7K2B2T0_9ACTN (DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B2T0_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 8.360e-8 Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1 Query: 10 GCPWQKMAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQKLKGLEFERVYLVSLDHVYAGPGAD----DETKRRLVYVGMTRATDHLMLALHGSG 333 G +A+L G+ R + A V DL+++ A E VRVAT+Q LKGLEF V + +HV+ D D+ +RRL+YV MTRAT+ L + G G Sbjct: 476 GAEADHIAILTGSAELRTQI-ARRVPDAVNAKDLNDRGA-----EPRGAVRVATLQLLKGLEFRHVIVGGANHVWVTDDTDENAQDDQRRRLLYVAMTRATETLTVTYSGEG 581 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72433.17222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72433.17222.1 >prot_M-pyrifera_M_contig72433.17222.1 ID=prot_M-pyrifera_M_contig72433.17222.1|Name=mRNA_M-pyrifera_M_contig72433.17222.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp MAVLVGNGNARKHVPAVAGRHGVPFADLSEKSARKSIGEIGDVVRVATIQback to top mRNA from alignment at M-pyrifera_M_contig72433:748..1110- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig72433.17222.1 ID=mRNA_M-pyrifera_M_contig72433.17222.1|Name=mRNA_M-pyrifera_M_contig72433.17222.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig72433:748..1110- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig72433:748..1110- >mRNA_M-pyrifera_M_contig72433.17222.1 ID=mRNA_M-pyrifera_M_contig72433.17222.1|Name=mRNA_M-pyrifera_M_contig72433.17222.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig72433:748..1110- (Macrocystis pyrifera P11B4 male)back to top |