mRNA_M-pyrifera_M_contig7227.17187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7227.17187.1
Unique NamemRNA_M-pyrifera_M_contig7227.17187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7227.17187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7227contigM-pyrifera_M_contig7227:11322..12275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size954
Cds size951
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.3202-UTR-M-pyrifera_M_contig7227:11321..113241622816619.3202-UTR-M-pyrifera_M_contig7227:11321..11324Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7227 11322..11324 +
1692278080.7713106-UTR-M-pyrifera_M_contig7227:11321..113241692278080.7713106-UTR-M-pyrifera_M_contig7227:11321..11324Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7227 11322..11324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.3343513-CDS-M-pyrifera_M_contig7227:11324..122751622816619.3343513-CDS-M-pyrifera_M_contig7227:11324..12275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7227 11325..12275 +
1692278080.788267-CDS-M-pyrifera_M_contig7227:11324..122751692278080.788267-CDS-M-pyrifera_M_contig7227:11324..12275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7227 11325..12275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7227.17187.1prot_M-pyrifera_M_contig7227.17187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7227 11325..12275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7227.17187.1

>prot_M-pyrifera_M_contig7227.17187.1 ID=prot_M-pyrifera_M_contig7227.17187.1|Name=mRNA_M-pyrifera_M_contig7227.17187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=317bp
MNTDRLTFGDQYDRSIEDVQWPAGLKQVTFGRLFNKPLDRVKWPSTLVEI
VFGFNFNAPVVGMPLPAGLRKVRFGCGFNQALEGVRWPSSLRDISFGNGF
NKPIRGVVWPEGLKTLTLGWDFNQAVEGVVWPRGMEELIFSGRFNQPVEG
AVFPASLQRLDFGTTFDRPVSRVSWPTSLKRLTFGCLYNHTLERTRLPMG
LEMLTLGCSWNQPLASVALPAGLTSLSLGHDFDQPLDNVRWPAGLRELSI
GDSFDRSLNGVEWPATLKTVTIGDAFDQPLEAVEWPPALEYLSLGARFSQ
SLEGTLWPARLTTLMFG
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mRNA from alignment at M-pyrifera_M_contig7227:11322..12275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7227.17187.1 ID=mRNA_M-pyrifera_M_contig7227.17187.1|Name=mRNA_M-pyrifera_M_contig7227.17187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig7227:11322..12275+ (Macrocystis pyrifera P11B4 male)
CCCATGAACACCGACCGCCTCACGTTTGGAGACCAGTACGACCGATCTAT
CGAGGACGTGCAGTGGCCGGCGGGCCTGAAGCAGGTCACTTTCGGCAGGC
TCTTCAACAAACCTCTGGACCGCGTGAAGTGGCCGTCGACCCTGGTTGAG
ATTGTTTTCGGGTTCAACTTCAACGCGCCCGTTGTTGGCATGCCGTTGCC
CGCCGGGCTGCGGAAGGTTCGGTTCGGGTGCGGTTTTAACCAGGCGCTGG
AAGGAGTGCGGTGGCCTTCTAGCCTGCGGGATATCTCCTTTGGCAACGGG
TTCAACAAGCCCATCCGCGGAGTCGTCTGGCCCGAGGGACTCAAGACGCT
GACGCTGGGCTGGGATTTCAATCAAGCCGTTGAAGGCGTTGTGTGGCCGA
GGGGCATGGAGGAGTTGATATTCAGCGGGCGATTTAATCAGCCCGTAGAG
GGAGCCGTGTTCCCGGCCAGTCTCCAACGCCTGGATTTCGGCACTACGTT
CGATCGTCCAGTCAGTCGAGTTTCGTGGCCCACAAGTCTTAAGCGGCTCA
CCTTCGGCTGCCTCTACAACCACACGCTGGAGCGCACGCGACTCCCCATG
GGGCTTGAGATGTTGACGCTCGGTTGCAGCTGGAACCAACCCCTTGCCTC
GGTGGCGCTGCCTGCTGGTCTGACCAGCTTGTCTCTGGGGCACGATTTCG
ACCAACCGTTGGACAATGTCAGGTGGCCTGCGGGGCTCCGCGAGCTCTCT
ATCGGGGACTCTTTTGACAGGTCTCTGAATGGCGTGGAGTGGCCGGCTAC
TTTGAAGACCGTCACTATTGGTGACGCGTTTGATCAGCCTCTTGAGGCGG
TAGAGTGGCCGCCGGCTTTGGAGTACCTCTCGTTGGGCGCGAGGTTCTCC
CAGTCGCTCGAAGGCACGCTGTGGCCGGCGCGGTTGACGACGTTGATGTT
CGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7227:11322..12275+

>mRNA_M-pyrifera_M_contig7227.17187.1 ID=mRNA_M-pyrifera_M_contig7227.17187.1|Name=mRNA_M-pyrifera_M_contig7227.17187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1902bp|location=Sequence derived from alignment at M-pyrifera_M_contig7227:11322..12275+ (Macrocystis pyrifera P11B4 male)
ATGAACACCGACCGCCTCACGTTTGGAGACCAGTACGACCGATCTATCGA
GGACGTGCAGTGGCCGGCGGGCCTGAAGCAGGTCACTTTCGGCAGGCTCT
TCAACAAACCTCTGGACCGCGTGAAGTGGCCGTCGACCCTGGTTGAGATT
GTTTTCGGGTTCAACTTCAACGCGCCCGTTGTTGGCATGCCGTTGCCCGC
CGGGCTGCGGAAGGTTCGGTTCGGGTGCGGTTTTAACCAGGCGCTGGAAG
GAGTGCGGTGGCCTTCTAGCCTGCGGGATATCTCCTTTGGCAACGGGTTC
AACAAGCCCATCCGCGGAGTCGTCTGGCCCGAGGGACTCAAGACGCTGAC
GCTGGGCTGGGATTTCAATCAAGCCGTTGAAGGCGTTGTGTGGCCGAGGG
GCATGGAGGAGTTGATATTCAGCGGGCGATTTAATCAGCCCGTAGAGGGA
GCCGTGTTCCCGGCCAGTCTCCAACGCCTGGATTTCGGCACTACGTTCGA
TCGTCCAGTCAGTCGAGTTTCGTGGCCCACAAGTCTTAAGCGGCTCACCT
TCGGCTGCCTCTACAACCACACGCTGGAGCGCACGCGACTCCCCATGGGG
CTTGAGATGTTGACGCTCGGTTGCAGCTGGAACCAACCCCTTGCCTCGGT
GGCGCTGCCTGCTGGTCTGACCAGCTTGTCTCTGGGGCACGATTTCGACC
AACCGTTGGACAATGTCAGGTGGCCTGCGGGGCTCCGCGAGCTCTCTATC
GGGGACTCTTTTGACAGGTCTCTGAATGGCGTGGAGTGGCCGGCTACTTT
GAAGACCGTCACTATTGGTGACGCGTTTGATCAGCCTCTTGAGGCGGTAG
AGTGGCCGCCGGCTTTGGAGTACCTCTCGTTGGGCGCGAGGTTCTCCCAG
TCGCTCGAAGGCACGCTGTGGCCGGCGCGGTTGACGACGTTGATGTTCGG
TATGAACACCGACCGCCTCACGTTTGGAGACCAGTACGACCGATCTATCG
AGGACGTGCAGTGGCCGGCGGGCCTGAAGCAGGTCACTTTCGGCAGGCTC
TTCAACAAACCTCTGGACCGCGTGAAGTGGCCGTCGACCCTGGTTGAGAT
TGTTTTCGGGTTCAACTTCAACGCGCCCGTTGTTGGCATGCCGTTGCCCG
CCGGGCTGCGGAAGGTTCGGTTCGGGTGCGGTTTTAACCAGGCGCTGGAA
GGAGTGCGGTGGCCTTCTAGCCTGCGGGATATCTCCTTTGGCAACGGGTT
CAACAAGCCCATCCGCGGAGTCGTCTGGCCCGAGGGACTCAAGACGCTGA
CGCTGGGCTGGGATTTCAATCAAGCCGTTGAAGGCGTTGTGTGGCCGAGG
GGCATGGAGGAGTTGATATTCAGCGGGCGATTTAATCAGCCCGTAGAGGG
AGCCGTGTTCCCGGCCAGTCTCCAACGCCTGGATTTCGGCACTACGTTCG
ATCGTCCAGTCAGTCGAGTTTCGTGGCCCACAAGTCTTAAGCGGCTCACC
TTCGGCTGCCTCTACAACCACACGCTGGAGCGCACGCGACTCCCCATGGG
GCTTGAGATGTTGACGCTCGGTTGCAGCTGGAACCAACCCCTTGCCTCGG
TGGCGCTGCCTGCTGGTCTGACCAGCTTGTCTCTGGGGCACGATTTCGAC
CAACCGTTGGACAATGTCAGGTGGCCTGCGGGGCTCCGCGAGCTCTCTAT
CGGGGACTCTTTTGACAGGTCTCTGAATGGCGTGGAGTGGCCGGCTACTT
TGAAGACCGTCACTATTGGTGACGCGTTTGATCAGCCTCTTGAGGCGGTA
GAGTGGCCGCCGGCTTTGGAGTACCTCTCGTTGGGCGCGAGGTTCTCCCA
GTCGCTCGAAGGCACGCTGTGGCCGGCGCGGTTGACGACGTTGATGTTCG
GT
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