mRNA_M-pyrifera_M_contig72123.17164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig72123.17164.1
Unique Name	mRNA_M-pyrifera_M_contig72123.17164.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8C3A3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3A3_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.170e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2598 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2706

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8C5M9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5M9_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.200e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2762 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2870

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8BZL4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZL4_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.210e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2796 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2904

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8CG85_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CG85_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.230e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2768 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2876

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8E6M5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E6M5_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.240e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2562 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2670

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8DQT2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQT2_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 9.250e-24
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2598 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2706

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8DBM3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBM3_CAFRO)

HSP 1 Score: 103 bits (256), Expect = 2.350e-23
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct:  478 NERPVIADAERQVEENSPVNTPVGDILPAFDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 586

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8C299_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C299_CAFRO)

HSP 1 Score: 103 bits (256), Expect = 2.350e-23
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  Y+L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2658 NERPVIADAERQVEENSPVNTPVGDILPAFDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEYSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2766

[Close]

BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: A0A5A8CC96_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC96_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 3.200e-23
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1

Query:    4 NDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDG--VPA---LSDSATVTVSVVDVNE 324
            N+ PV+ DA R V+ENSPV T VG  +PA+DQD   T   L +++ SGND GMF ID  SGQ++VA A LD+E T  ++L V V DDG  VP    LS SA +T+ +VDVNE
Sbjct: 2783 NERPVIADAERQVEENSPVNTPVGDILPASDQDAGQT---LSFAITSGNDDGMFKIDGCSGQVKVARAALDFETTKEFSLQVTVTDDGGVVPGPARLSASAVLTIRIVDVNE 2891

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BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Match: UPI0019E3678B (Cadherin domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019E3678B)

HSP 1 Score: 97.4 bits (241), Expect = 2.460e-21
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1

Query:    1 VNDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGNDAGMFNIDASSGQIRVA-IAQLDYERTSTYALGVRVQDDGVPALSDSATVTVSVVDVNE 324
            VN+APV NDA  ++ EN   G+ VG A+ ATD+D   T   L YS+++GND G F ID ++G I VA  A LD+E T T+AL VRV+D+G P L D+AT+T+++ D+NE
Sbjct: 1123 VNEAPVANDATFTIDENLAAGSFVGTAI-ATDEDFGDT---LTYSIIAGNDNGAFAIDPATGDITVANSAALDFETTPTFALTVRVRDNGNPRLEDTATITINLNDLNE 1227

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig72123.17164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5A8C3A3_CAFRO	9.170e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8C5M9_CAFRO	9.200e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8BZL4_CAFRO	9.210e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8CG85_CAFRO	9.230e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8E6M5_CAFRO	9.240e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8DQT2_CAFRO	9.250e-24	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8DBM3_CAFRO	2.350e-23	53.57	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8C299_CAFRO	2.350e-23	53.57	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A5A8CC96_CAFRO	3.200e-23	52.68	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
UPI0019E3678B	2.460e-21	50.46	Cadherin domain-containing protein n=1 Tax=Leptoly...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig72123	contig	M-pyrifera_M_contig72123:326..649 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	89.4
Seed ortholog evalue	1.2e-15
Seed eggNOG ortholog	305900.GV64_16590
KEGG ko	ko:K01179,ko:K01387,ko:K20276
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,ko02024,map00500,map01100,map02024
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Concanavalin A-like lectin/glucanases superfamily
EggNOG OGs	1QYMC@1224,1T3SC@1236,COG0726@1,COG0726@2,COG2911@1,COG2911@2,COG2931@1,COG2931@2,COG3291@1,COG3291@2,COG3533@1,COG3533@2,COG4719@1,COG4719@2,COG4733@1,COG4733@2,COG4932@1,COG4932@2,COG5184@1,COG5184@2,COG5434@1,COG5434@2
EC	3.2.1.4,3.4.24.3
COG Functional cat.	MQ
CAZy	GH5,GH9
Best tax level	Gammaproteobacteria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko02042
Exons	1
Model size	324
Cds size	324
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816616.9739964-CDS-M-pyrifera_M_contig72123:325..649	1622816616.9739964-CDS-M-pyrifera_M_contig72123:325..649	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig72123 326..649 -
1692278079.8787916-CDS-M-pyrifera_M_contig72123:325..649	1692278079.8787916-CDS-M-pyrifera_M_contig72123:325..649	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig72123 326..649 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig72123.17164.1	prot_M-pyrifera_M_contig72123.17164.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig72123 326..649 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig72123:326..649-
coding sequence from alignment at M-pyrifera_M_contig72123:326..649-

protein sequence of mRNA_M-pyrifera_M_contig72123.17164.1

>prot_M-pyrifera_M_contig72123.17164.1 ID=prot_M-pyrifera_M_contig72123.17164.1|Name=mRNA_M-pyrifera_M_contig72123.17164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
VNDAPVVNDAARSVQENSPVGTAVGAAVPATDQDLSHTSQQLRYSLVSGN
DAGMFNIDASSGQIRVAIAQLDYERTSTYALGVRVQDDGVPALSDSATVT
VSVVDVNE

mRNA from alignment at M-pyrifera_M_contig72123:326..649-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig72123.17164.1 ID=mRNA_M-pyrifera_M_contig72123.17164.1|Name=mRNA_M-pyrifera_M_contig72123.17164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig72123:326..649- (Macrocystis pyrifera P11B4 male)
GTGAACGACGCGCCGGTGGTGAACGATGCGGCGCGCAGCGTGCAGGAGAA
CAGCCCCGTGGGCACTGCGGTGGGGGCGGCGGTGCCAGCGACGGACCAGG
ATCTGAGCCACACCTCGCAGCAGCTGCGGTACAGTCTGGTGAGCGGCAAC
GACGCTGGCATGTTCAACATCGACGCGTCGAGCGGCCAGATCCGCGTGGC
TATCGCGCAGCTGGACTACGAGCGGACGTCAACGTACGCGCTGGGCGTCC
GCGTGCAGGACGACGGCGTGCCGGCGCTGAGCGACTCGGCGACGGTCACC
GTGAGCGTGGTGGACGTGAACGAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72123:326..649-

>mRNA_M-pyrifera_M_contig72123.17164.1 ID=mRNA_M-pyrifera_M_contig72123.17164.1|Name=mRNA_M-pyrifera_M_contig72123.17164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig72123:326..649- (Macrocystis pyrifera P11B4 male)
GTGAACGACGCGCCGGTGGTGAACGATGCGGCGCGCAGCGTGCAGGAGAA
CAGCCCCGTGGGCACTGCGGTGGGGGCGGCGGTGCCAGCGACGGACCAGG
ATCTGAGCCACACCTCGCAGCAGCTGCGGTACAGTCTGGTGAGCGGCAAC
GACGCTGGCATGTTCAACATCGACGCGTCGAGCGGCCAGATCCGCGTGGC
TATCGCGCAGCTGGACTACGAGCGGACGTCAACGTACGCGCTGGGCGTCC
GCGTGCAGGACGACGGCGTGCCGGCGCTGAGCGACTCGGCGACGGTCACC
GTGAGCGTGGTGGACGTGAACGAGGTGAACGACGCGCCGGTGGTGAACGA
TGCGGCGCGCAGCGTGCAGGAGAACAGCCCCGTGGGCACTGCGGTGGGGG
CGGCGGTGCCAGCGACGGACCAGGATCTGAGCCACACCTCGCAGCAGCTG
CGGTACAGTCTGGTGAGCGGCAACGACGCTGGCATGTTCAACATCGACGC
GTCGAGCGGCCAGATCCGCGTGGCTATCGCGCAGCTGGACTACGAGCGGA
CGTCAACGTACGCGCTGGGCGTCCGCGTGCAGGACGACGGCGTGCCGGCG
CTGAGCGACTCGGCGACGGTCACCGTGAGCGTGGTGGACGTGAACGAG