mRNA_M-pyrifera_M_contig71888.17119.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71888.17119.1
Unique NamemRNA_M-pyrifera_M_contig71888.17119.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71888.17119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71888contigM-pyrifera_M_contig71888:1..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.361372-CDS-M-pyrifera_M_contig71888:0..6661622816614.361372-CDS-M-pyrifera_M_contig71888:0..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71888 1..666 +
1692278078.315178-CDS-M-pyrifera_M_contig71888:0..6661692278078.315178-CDS-M-pyrifera_M_contig71888:0..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71888 1..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71888.17119.1prot_M-pyrifera_M_contig71888.17119.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71888 1..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71888.17119.1

>prot_M-pyrifera_M_contig71888.17119.1 ID=prot_M-pyrifera_M_contig71888.17119.1|Name=mRNA_M-pyrifera_M_contig71888.17119.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
DITLNGSSVGASGVLVTGRLTTDQMGDITVRGTTTALSSSGVRIELPAGI
LPTDFGDLDITGTAPAGASLLDIHYSTGLDITSKLGGSVVYNSPVLVTGG
GTVTGFIDFSILDGIEVSGGAFLLTSTGNTVWNGNSFIRSDTSVAGGGTV
SLGTPSIVLDNSQLTFAKDVFLTSDVTIASVSGVCSFVGRTDGTHKLSLD
GVGSYGFAAAIGSLTALDTLTL
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mRNA from alignment at M-pyrifera_M_contig71888:1..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71888.17119.1 ID=mRNA_M-pyrifera_M_contig71888.17119.1|Name=mRNA_M-pyrifera_M_contig71888.17119.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig71888:1..666+ (Macrocystis pyrifera P11B4 male)
GATATTACTCTCAACGGCTCCTCGGTCGGCGCTTCCGGCGTCCTCGTCAC
TGGTCGGCTTACAACGGACCAAATGGGGGATATTACTGTTCGTGGCACTA
CGACTGCTCTGTCGAGCTCTGGGGTTCGGATTGAGTTGCCAGCGGGCATT
CTCCCAACTGACTTTGGCGATTTGGACATCACTGGTACTGCCCCGGCAGG
GGCCTCATTGCTGGACATCCACTACAGCACAGGGCTGGATATTACCTCCA
AGTTAGGCGGCTCTGTGGTGTACAACAGTCCTGTGCTTGTCACCGGAGGA
GGAACAGTGACAGGCTTCATTGATTTCAGTATTTTGGACGGCATTGAGGT
CAGTGGAGGGGCATTTCTGCTCACTTCCACAGGCAACACGGTGTGGAACG
GCAACAGCTTCATTAGGTCTGACACATCGGTTGCGGGGGGTGGCACGGTA
TCCCTGGGCACACCGAGCATAGTGCTCGACAACTCACAGCTCACATTTGC
CAAGGATGTCTTTCTGACTTCAGACGTCACGATTGCAAGTGTCTCGGGGG
TTTGCAGCTTTGTGGGCCGCACCGACGGCACACATAAGCTCTCCTTGGAT
GGCGTCGGCTCCTATGGCTTTGCCGCTGCCATTGGCAGTCTCACTGCCCT
TGACACGCTCACTCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71888:1..666+

>mRNA_M-pyrifera_M_contig71888.17119.1 ID=mRNA_M-pyrifera_M_contig71888.17119.1|Name=mRNA_M-pyrifera_M_contig71888.17119.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig71888:1..666+ (Macrocystis pyrifera P11B4 male)
GATATTACTCTCAACGGCTCCTCGGTCGGCGCTTCCGGCGTCCTCGTCAC
TGGTCGGCTTACAACGGACCAAATGGGGGATATTACTGTTCGTGGCACTA
CGACTGCTCTGTCGAGCTCTGGGGTTCGGATTGAGTTGCCAGCGGGCATT
CTCCCAACTGACTTTGGCGATTTGGACATCACTGGTACTGCCCCGGCAGG
GGCCTCATTGCTGGACATCCACTACAGCACAGGGCTGGATATTACCTCCA
AGTTAGGCGGCTCTGTGGTGTACAACAGTCCTGTGCTTGTCACCGGAGGA
GGAACAGTGACAGGCTTCATTGATTTCAGTATTTTGGACGGCATTGAGGT
CAGTGGAGGGGCATTTCTGCTCACTTCCACAGGCAACACGGTGTGGAACG
GCAACAGCTTCATTAGGTCTGACACATCGGTTGCGGGGGGTGGCACGGTA
TCCCTGGGCACACCGAGCATAGTGCTCGACAACTCACAGCTCACATTTGC
CAAGGATGTCTTTCTGACTTCAGACGTCACGATTGCAAGTGTCTCGGGGG
TTTGCAGCTTTGTGGGCCGCACCGACGGCACACATAAGCTCTCCTTGGAT
GGCGTCGGCTCCTATGGCTTTGCCGCTGCCATTGGCAGTCTCACTGCCCT
TGACACGCTCACTCTAGATATTACTCTCAACGGCTCCTCGGTCGGCGCTT
CCGGCGTCCTCGTCACTGGTCGGCTTACAACGGACCAAATGGGGGATATT
ACTGTTCGTGGCACTACGACTGCTCTGTCGAGCTCTGGGGTTCGGATTGA
GTTGCCAGCGGGCATTCTCCCAACTGACTTTGGCGATTTGGACATCACTG
GTACTGCCCCGGCAGGGGCCTCATTGCTGGACATCCACTACAGCACAGGG
CTGGATATTACCTCCAAGTTAGGCGGCTCTGTGGTGTACAACAGTCCTGT
GCTTGTCACCGGAGGAGGAACAGTGACAGGCTTCATTGATTTCAGTATTT
TGGACGGCATTGAGGTCAGTGGAGGGGCATTTCTGCTCACTTCCACAGGC
AACACGGTGTGGAACGGCAACAGCTTCATTAGGTCTGACACATCGGTTGC
GGGGGGTGGCACGGTATCCCTGGGCACACCGAGCATAGTGCTCGACAACT
CACAGCTCACATTTGCCAAGGATGTCTTTCTGACTTCAGACGTCACGATT
GCAAGTGTCTCGGGGGTTTGCAGCTTTGTGGGCCGCACCGACGGCACACA
TAAGCTCTCCTTGGATGGCGTCGGCTCCTATGGCTTTGCCGCTGCCATTG
GCAGTCTCACTGCCCTTGACACGCTCACTCTA
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