mRNA_M-pyrifera_M_contig71609.17068.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71609.17068.1
Unique NamemRNA_M-pyrifera_M_contig71609.17068.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A855C5D3_BACCE (Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A855C5D3_BACCE)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-8
Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   58 HFMLDGINLQNVFEPTGDQYN-----------SFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            HF+LDG+N+++V   T +Q N           S T++E+R+V++NWDR+KN ++FY + +K+
Sbjct:  836 HFVLDGLNIEHVVNKTKEQTNEMMGRLLGPGESITASELRYVYRNWDRLKNRVSFYRDNEKL 897          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: UPI0012FF98CF (hypothetical protein n=1 Tax=Enterobacter roggenkampii TaxID=1812935 RepID=UPI0012FF98CF)

HSP 1 Score: 53.5 bits (127), Expect = 4.860e-7
Identity = 21/53 (39.62%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   58 HFMLDGINLQNVFEPTGDQYN-SFTSAEIRFVFKNWDRIKNTITFYSNGKKIK 213
            HF+LDG+N+Q V     + Y    T++E+R++++NW R+K+ + FY NG+ +K
Sbjct:  101 HFILDGLNVQGVINKDKNFYGLKITASELRYIYRNWGRLKDKVIFYLNGEVVK 153          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: UPI0006B1D441 (hypothetical protein n=3 Tax=Enterococcus hirae TaxID=1354 RepID=UPI0006B1D441)

HSP 1 Score: 53.9 bits (128), Expect = 9.510e-7
Identity = 23/64 (35.94%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   31 ALLKPDVNKHFMLDGINLQNVFEPTG---DQYNSFTSAEIRFVFKNWDRIKNTITFYSNGKKIK 213
            A+ K D+  ++ LDGIN++ V + +     +  S TS E+R+V++NW++++  +TF S G+K+K
Sbjct:  161 AMEKQDLELYYCLDGINIEFVLDKSNLWEREGKSLTSRELRYVYRNWEKLRGKVTFISQGEKVK 224          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A1L8WPL6_9ENTE (Uncharacterized protein n=1 Tax=Enterococcus ratti TaxID=150033 RepID=A0A1L8WPL6_9ENTE)

HSP 1 Score: 51.6 bits (122), Expect = 4.150e-6
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 DTVIKRCCQAAL----LKPDVNKHFMLDGINLQNVFEPT---GDQYNSFTSAEIRFVFKNWDRIKNTITF 189
            D  IKR C+  +    + PDV  HF LDGI++++V       G    S TS+E+R+V++NW+ +K  + F
Sbjct:   42 DLHIKRGCKIGIDIAKINPDVEIHFCLDGIDIKDVISKAQGEGIYGGSMTSSELRYVYRNWEELKERVIF 111          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A243EHM7_BACTU (Toxin n=1 Tax=Bacillus thuringiensis serovar toumanoffi TaxID=180862 RepID=A0A243EHM7_BACTU)

HSP 1 Score: 52.0 bits (123), Expect = 5.230e-6
Identity = 18/51 (35.29%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   58 HFMLDGINLQNVFEPTGDQYNSFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            HF+LD ++++++    GD   S T++E+R+V++N +R++  + FY NG+K+
Sbjct:  831 HFVLDNLDIESIVAKRGDSGESITASELRYVYRNRERLQGRVVFYRNGEKL 881          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A855BUI6_BACCE (Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A855BUI6_BACCE)

HSP 1 Score: 52.0 bits (123), Expect = 5.230e-6
Identity = 19/51 (37.25%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   58 HFMLDGINLQNVFEPTGDQYNSFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            HF+LDG+N+++V   +G+   S T++E+R+V++N +R+   + FY N +K+
Sbjct:  831 HFVLDGLNIESVVSKSGEYGKSITASELRYVYRNKERLAGRLNFYKNMEKV 881          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: UPI000BF848AF (toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI000BF848AF)

HSP 1 Score: 51.6 bits (122), Expect = 7.160e-6
Identity = 18/51 (35.29%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   58 HFMLDGINLQNVFEPTGDQYNSFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            HF+LD ++++++    GD   S T++E+R+V++N +R++  + FY NG+K+
Sbjct:  831 HFVLDNLDIESIVAKRGDSGESITASELRYVYRNRERLQGRVIFYRNGEKL 881          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A511J0M6_9ENTE (Uncharacterized protein n=2 Tax=Enterococcus villorum TaxID=112904 RepID=A0A511J0M6_9ENTE)

HSP 1 Score: 50.1 bits (118), Expect = 2.420e-5
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   25 QAALLKPDVNKHFMLDGINLQNVFEPTGDQYNSFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            + A +  D+  HF+LD I+ + V     D Y+ +TS E+R+V++NW+++K  I F  N +++
Sbjct:  143 EMAQIHDDLIVHFVLDNIDFKEVLSKNMDGYD-YTSKELRYVYRNWEKLKEKIIFIENNERV 203          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A329H4K8_9ENTR (Uncharacterized protein n=1 Tax=Enterobacter sp. RIT 418 TaxID=2202164 RepID=A0A329H4K8_9ENTR)

HSP 1 Score: 49.7 bits (117), Expect = 3.180e-5
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    7 VIKRCCQAAL---LKP--DVNKHFMLDGINLQNVF--EPTGDQYN--SFTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            VI R  +AAL   LK   D   HF+LDGI+L  V   E  G  Y+  S T+AE+RF+F++ D I+N + FY +G ++
Sbjct:  210 VITRGSKAALDMILKSTGDDKIHFILDGIDLNKVINKEEVGHNYSDRSTTAAELRFLFRHKDEIRNKVNFYMHGSQV 286          
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Match: A0A855BNT1_BACCE (Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A855BNT1_BACCE)

HSP 1 Score: 49.7 bits (117), Expect = 3.190e-5
Identity = 23/72 (31.94%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   13 KRCCQAALLKPDVNKHFMLDGINLQNVFEPTGDQYNS------FTSAEIRFVFKNWDRIKNTITFYSNGKKI 210
            K   + A    +  +HF+LDG+++++V   T    NS       T++E+R+V++N+D++K  I FY N +K+
Sbjct:  199 KLTLEMAASNKNTQRHFVLDGLDIEHVVNKTKGMGNSTGLGESVTASELRYVYRNYDKLKGRILFYRNKEKL 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71609.17068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A855C5D3_BACCE4.790e-838.71Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A... [more]
UPI0012FF98CF4.860e-739.62hypothetical protein n=1 Tax=Enterobacter roggenka... [more]
UPI0006B1D4419.510e-735.94hypothetical protein n=3 Tax=Enterococcus hirae Ta... [more]
A0A1L8WPL6_9ENTE4.150e-637.14Uncharacterized protein n=1 Tax=Enterococcus ratti... [more]
A0A243EHM7_BACTU5.230e-635.29Toxin n=1 Tax=Bacillus thuringiensis serovar touma... [more]
A0A855BUI6_BACCE5.230e-637.25Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A... [more]
UPI000BF848AF7.160e-635.29toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI... [more]
A0A511J0M6_9ENTE2.420e-533.87Uncharacterized protein n=2 Tax=Enterococcus villo... [more]
A0A329H4K8_9ENTR3.180e-542.86Uncharacterized protein n=1 Tax=Enterobacter sp. R... [more]
A0A855BNT1_BACCE3.190e-531.94Toxin n=1 Tax=Bacillus cereus TaxID=1396 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71609contigM-pyrifera_M_contig71609:792..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.322596-CDS-M-pyrifera_M_contig71609:791..10041622816611.322596-CDS-M-pyrifera_M_contig71609:791..1004Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71609 792..1004 -
1692278076.6278155-CDS-M-pyrifera_M_contig71609:791..10041692278076.6278155-CDS-M-pyrifera_M_contig71609:791..1004Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71609 792..1004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71609.17068.1prot_M-pyrifera_M_contig71609.17068.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71609 792..1004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71609.17068.1

>prot_M-pyrifera_M_contig71609.17068.1 ID=prot_M-pyrifera_M_contig71609.17068.1|Name=mRNA_M-pyrifera_M_contig71609.17068.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
DTVIKRCCQAALLKPDVNKHFMLDGINLQNVFEPTGDQYNSFTSAEIRFV
FKNWDRIKNTITFYSNGKKIK
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mRNA from alignment at M-pyrifera_M_contig71609:792..1004-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71609.17068.1 ID=mRNA_M-pyrifera_M_contig71609.17068.1|Name=mRNA_M-pyrifera_M_contig71609.17068.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig71609:792..1004- (Macrocystis pyrifera P11B4 male)
GATACTGTAATTAAACGCTGTTGCCAAGCTGCATTATTAAAGCCCGATGT AAATAAGCATTTCATGCTCGATGGTATCAATTTACAAAACGTTTTTGAGC CTACTGGCGACCAATATAACTCTTTCACATCCGCTGAAATTCGCTTTGTC TTTAAAAACTGGGATCGAATCAAGAATACGATAACATTTTATAGCAATGG CAAAAAAATCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71609:792..1004-

>mRNA_M-pyrifera_M_contig71609.17068.1 ID=mRNA_M-pyrifera_M_contig71609.17068.1|Name=mRNA_M-pyrifera_M_contig71609.17068.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig71609:792..1004- (Macrocystis pyrifera P11B4 male)
GATACTGTAATTAAACGCTGTTGCCAAGCTGCATTATTAAAGCCCGATGT
AAATAAGCATTTCATGCTCGATGGTATCAATTTACAAAACGTTTTTGAGC
CTACTGGCGACCAATATAACTCTTTCACATCCGCTGAAATTCGCTTTGTC
TTTAAAAACTGGGATCGAATCAAGAATACGATAACATTTTATAGCAATGG
CAAAAAAATCAAAGATACTGTAATTAAACGCTGTTGCCAAGCTGCATTAT
TAAAGCCCGATGTAAATAAGCATTTCATGCTCGATGGTATCAATTTACAA
AACGTTTTTGAGCCTACTGGCGACCAATATAACTCTTTCACATCCGCTGA
AATTCGCTTTGTCTTTAAAAACTGGGATCGAATCAAGAATACGATAACAT
TTTATAGCAATGGCAAAAAAATCAAA
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