mRNA_M-pyrifera_M_contig716.17066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig716.17066.1
Unique NamemRNA_M-pyrifera_M_contig716.17066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig716.17066.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.880e-6
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:    1 YVFVAGVSKAWRNAWGNLPKITQAITVETTAAPLQWSFDGGLMNRESLSRRIAETCGVKVWRCAY-LNGCRFPESACFTAVARGELETIQWALS 279
            Y+F AGVS+ WR+AW   P  T+A T +T    L  SF  GL  R ++ R IA    + +   A   + C + E  C  A   G  + ++WA +
Sbjct:   23 YIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRWAFA 116
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BLAST of mRNA_M-pyrifera_M_contig716.17066.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.740e-6
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    1 YVFVAGVSKAWRNAWGNLPKITQAITVETTAAPLQWSFDGGLMNRESLSRRIAETCGVKVWRCAYLN-GCRFPESACFTAVARGELETIQWALS 279
            Y+F AGVS+ WR+AW   P  T+A+T +T    L  SF+ GL  R ++ + IA    + +   A     C + E  C  A   G  + ++WA +
Sbjct:    9 YLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRWAFA 102
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BLAST of mRNA_M-pyrifera_M_contig716.17066.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 YVFVAGVSKAWRNAWGNLPKITQAITVETTAAPLQWSFDGGLMNRESLSRRIAETCGVKVWRCAYLNGCRFPESAC 228
            ++F AGV +AW+ AWG  P  T+A+T +TT A L  +F  GL     +   +A+   + + +CA  +GC + E  C
Sbjct:   24 FLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig716.17066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JM75_9PHAE4.880e-634.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI8.740e-632.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI1.030e-535.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig716contigM-pyrifera_M_contig716:18569..19837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1188
Cds size1188
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.2348537-CDS-M-pyrifera_M_contig716:18568..195021622816611.2348537-CDS-M-pyrifera_M_contig716:18568..19502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig716 18569..19502 +
1692278076.5906017-CDS-M-pyrifera_M_contig716:18568..195021692278076.5906017-CDS-M-pyrifera_M_contig716:18568..19502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig716 18569..19502 +
1622816611.2517707-CDS-M-pyrifera_M_contig716:19583..198371622816611.2517707-CDS-M-pyrifera_M_contig716:19583..19837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig716 19584..19837 +
1692278076.6054113-CDS-M-pyrifera_M_contig716:19583..198371692278076.6054113-CDS-M-pyrifera_M_contig716:19583..19837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig716 19584..19837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig716.17066.1prot_M-pyrifera_M_contig716.17066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig716 18569..19837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig716.17066.1

>prot_M-pyrifera_M_contig716.17066.1 ID=prot_M-pyrifera_M_contig716.17066.1|Name=mRNA_M-pyrifera_M_contig716.17066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=396bp
YVFVAGVSKAWRNAWGNLPKITQAITVETTAAPLQWSFDGGLMNRESLSR
RIAETCGVKVWRCAYLNGCRFPESACFTAVARGELETIQWALSINNAWRK
VLCAAAAAGGSLRILQWAHANDCPWDATTCSEAAGSGNLDILQWARSRRC
PWDSRTFSKAASGGHLGIIRWARAHGCGGMDGTTCSEAAGSGHLDIVQWA
RRNECPWDARTCSKAAGGGHLGILQWARDHNCPWYSTTCSEAAGAGHLDV
LRWARSANCPWDSQTCSRAAEGGHLDVLQWASAHGCDWNFQTCCSAAGGG
HLELLQWARANGCPCHEQAAGGAARGGHLDVLEWMQDNHHILHNGNICAR
AARGGHLHVLRWARVRGFVWDSRVCNGAAAGGHYELFKWARGNGCP
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mRNA from alignment at M-pyrifera_M_contig716:18569..19837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig716.17066.1 ID=mRNA_M-pyrifera_M_contig716.17066.1|Name=mRNA_M-pyrifera_M_contig716.17066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at M-pyrifera_M_contig716:18569..19837+ (Macrocystis pyrifera P11B4 male)
TATGTGTTCGTCGCCGGCGTATCGAAGGCGTGGAGAAACGCTTGGGGCAA
TCTGCCAAAAATAACGCAAGCTATAACGGTTGAGACCACGGCTGCTCCAC
TGCAGTGGAGTTTCGATGGCGGTCTCATGAATAGGGAGAGTCTATCGCGA
CGCATCGCCGAAACCTGTGGAGTTAAGGTTTGGCGGTGCGCTTATTTGAA
CGGATGTCGGTTTCCCGAAAGCGCCTGCTTCACGGCTGTCGCCCGGGGAG
AGCTGGAAACAATCCAGTGGGCACTCAGCATAAATAACGCTTGGCGCAAA
GTCCTTTGCGCGGCGGCTGCAGCGGGGGGTAGTCTACGCATTCTTCAGTG
GGCGCACGCTAATGACTGTCCCTGGGACGCTACAACGTGCAGTGAGGCTG
CTGGTTCGGGGAATCTCGATATCCTGCAGTGGGCACGTTCCCGAAGATGC
CCTTGGGATAGCCGAACGTTCTCGAAGGCTGCCAGCGGAGGGCATCTCGG
CATTATTCGGTGGGCGCGAGCCCATGGCTGCGGCGGTATGGACGGCACTA
CTTGCAGCGAAGCCGCTGGCTCAGGACATCTTGACATTGTTCAGTGGGCA
CGTCGCAATGAATGTCCCTGGGACGCCCGAACGTGCTCGAAGGCGGCGGG
GGGTGGACACCTCGGCATTCTTCAATGGGCCCGCGATCATAACTGCCCTT
GGTACAGTACTACCTGCAGCGAAGCCGCGGGTGCAGGTCATCTCGACGTT
CTGCGTTGGGCACGTTCCGCAAACTGTCCTTGGGACAGCCAAACGTGCTC
GAGGGCTGCTGAGGGTGGCCACCTTGACGTTCTCCAGTGGGCGAGCGCGC
ATGGCTGTGATTGGAATTTTCAAACGTGCTGCAGTGCTGCTGGTGGCGGG
CATCTCGAGTTGCTGCAATGGGCACGGGCTAACGGTGCCGACTGAAGCGA
AAGCGCGACTTACTGGGCTGCCCATTGGGGGCACCTTGACGTGCTTCAGT
GGGCAATTGCCGAAGGATGCCCCTGTCACGAGCAAGCGGCTGGGGGCGCT
GCTCGTGGTGGACACCTCGACGTGCTCGAATGGATGCAGGATAATCACCA
TATTTTGCATAACGGCAACATATGTGCAAGAGCTGCAAGAGGAGGACACC
TACATGTGCTTCGATGGGCGCGAGTCAGAGGTTTCGTCTGGGATAGTCGT
GTATGTAACGGGGCAGCCGCTGGAGGACATTATGAACTGTTTAAATGGGC
CCGGGGTAACGGTTGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig716:18569..19837+

>mRNA_M-pyrifera_M_contig716.17066.1 ID=mRNA_M-pyrifera_M_contig716.17066.1|Name=mRNA_M-pyrifera_M_contig716.17066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2376bp|location=Sequence derived from alignment at M-pyrifera_M_contig716:18569..19837+ (Macrocystis pyrifera P11B4 male)
TATGTGTTCGTCGCCGGCGTATCGAAGGCGTGGAGAAACGCTTGGGGCAA
TCTGCCAAAAATAACGCAAGCTATAACGGTTGAGACCACGGCTGCTCCAC
TGCAGTGGAGTTTCGATGGCGGTCTCATGAATAGGGAGAGTCTATCGCGA
CGCATCGCCGAAACCTGTGGAGTTAAGGTTTGGCGGTGCGCTTATTTGAA
CGGATGTCGGTTTCCCGAAAGCGCCTGCTTCACGGCTGTCGCCCGGGGAG
AGCTGGAAACAATCCAGTGGGCACTCAGCATAAATAACGCTTGGCGCAAA
GTCCTTTGCGCGGCGGCTGCAGCGGGGGGTAGTCTACGCATTCTTCAGTG
GGCGCACGCTAATGACTGTCCCTGGGACGCTACAACGTGCAGTGAGGCTG
CTGGTTCGGGGAATCTCGATATCCTGCAGTGGGCACGTTCCCGAAGATGC
CCTTGGGATAGCCGAACGTTCTCGAAGGCTGCCAGCGGAGGGCATCTCGG
CATTATTCGGTGGGCGCGAGCCCATGGCTGCGGCGGTATGGACGGCACTA
CTTGCAGCGAAGCCGCTGGCTCAGGACATCTTGACATTGTTCAGTGGGCA
CGTCGCAATGAATGTCCCTGGGACGCCCGAACGTGCTCGAAGGCGGCGGG
GGGTGGACACCTCGGCATTCTTCAATGGGCCCGCGATCATAACTGCCCTT
GGTACAGTACTACCTGCAGCGAAGCCGCGGGTGCAGGTCATCTCGACGTT
CTGCGTTGGGCACGTTCCGCAAACTGTCCTTGGGACAGCCAAACGTGCTC
GAGGGCTGCTGAGGGTGGCCACCTTGACGTTCTCCAGTGGGCGAGCGCGC
ATGGCTGTGATTGGAATTTTCAAACGTGCTGCAGTGCTGCTGGTGGCGGG
CATCTCGAGTTGCTGCAATGGGCACGGGCTAACGTATGTGTTCGTCGCCG
GCGTATCGAAGGCGTGGAGAAACGCTTGGGGCAATCTGCCAAAAATAACG
CAAGCTATAACGGTTGAGACCACGGCTGCTCCACTGCAGTGGAGTTTCGA
TGGCGGTCTCATGAATAGGGAGAGTCTATCGCGACGCATCGCCGAAACCT
GTGGAGTTAAGGTTTGGCGGTGCGCTTATTTGAACGGATGTCGGTTTCCC
GAAAGCGCCTGCTTCACGGCTGTCGCCCGGGGAGAGCTGGAAACAATCCA
GTGGGCACTCAGCATAAATAACGCTTGGCGCAAAGTCCTTTGCGCGGCGG
CTGCAGCGGGGGGTAGTCTACGCATTCTTCAGTGGGCGCACGCTAATGAC
TGTCCCTGGGACGCTACAACGTGCAGTGAGGCTGCTGGTTCGGGGAATCT
CGATATCCTGCAGTGGGCACGTTCCCGAAGATGCCCTTGGGATAGCCGAA
CGTTCTCGAAGGCTGCCAGCGGAGGGCATCTCGGCATTATTCGGTGGGCG
CGAGCCCATGGCTGCGGCGGTATGGACGGCACTACTTGCAGCGAAGCCGC
TGGCTCAGGACATCTTGACATTGTTCAGTGGGCACGTCGCAATGAATGTC
CCTGGGACGCCCGAACGTGCTCGAAGGCGGCGGGGGGTGGACACCTCGGC
ATTCTTCAATGGGCCCGCGATCATAACTGCCCTTGGTACAGTACTACCTG
CAGCGAAGCCGCGGGTGCAGGTCATCTCGACGTTCTGCGTTGGGCACGTT
CCGCAAACTGTCCTTGGGACAGCCAAACGTGCTCGAGGGCTGCTGAGGGT
GGCCACCTTGACGTTCTCCAGTGGGCGAGCGCGCATGGCTGTGATTGGAA
TTTTCAAACGTGCTGCAGTGCTGCTGGTGGCGGGCATCTCGAGTTGCTGC
AATGGGCACGGGCTAACGGATGCCCCTGTCACGAGCAAGCGGCTGGGGGC
GCTGCTCGTGGTGGACACCTCGACGTGCTCGAATGGATGCAGGATAATCA
CCATATTTTGCATAACGGCAACATATGTGCAAGAGCTGCAAGAGGAGGAC
ACCTACATGTGCTTCGATGGGCGCGAGTCAGAGGTTTCGTCTGGGATAGT
CGTGTATGTAACGGGGCAGCCGCTGGAGGACATTATGAACTGTTTAAATG
GGCCCGGGGTAACGGTTGCCCCGATGCCCCTGTCACGAGCAAGCGGCTGG
GGGCGCTGCTCGTGGTGGACACCTCGACGTGCTCGAATGGATGCAGGATA
ATCACCATATTTTGCATAACGGCAACATATGTGCAAGAGCTGCAAGAGGA
GGACACCTACATGTGCTTCGATGGGCGCGAGTCAGAGGTTTCGTCTGGGA
TAGTCGTGTATGTAACGGGGCAGCCGCTGGAGGACATTATGAACTGTTTA
AATGGGCCCGGGGTAACGGTTGCCCC
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