mRNA_M-pyrifera_M_contig7159.17065.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7159.17065.1
Unique NamemRNA_M-pyrifera_M_contig7159.17065.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7159.17065.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.200e-36
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 1 
Query:  244 DELELPSDLLLKVKSGGLQRMEADVLAAKEMKEQAEAASATALSAGRR-VRKKAGDLPRSDNFQLVVLDEDDGGVGDGAGSKPAAAENARKFLRDRLGSRKRVSYSLLKARKRVGPSPNF 600
            D LELPSDLLL+VKSGGLQRMEADVL A+E  +            GRR  R KAGD  RSDNF+LVVLDEDDGGV     SK  AAE+A+ FLRDR+GSRKRVS+SL KARKR+GPSPNF
Sbjct:   99 DGLELPSDLLLRVKSGGLQRMEADVLEAEE--QAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDESKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7159.17065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI1.200e-3667.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7159contigM-pyrifera_M_contig7159:9412..11628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Exons2
Model size603
Cds size603
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.1799047-CDS-M-pyrifera_M_contig7159:9411..98301622816611.1799047-CDS-M-pyrifera_M_contig7159:9411..9830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7159 9412..9830 +
1692278076.5691051-CDS-M-pyrifera_M_contig7159:9411..98301692278076.5691051-CDS-M-pyrifera_M_contig7159:9411..9830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7159 9412..9830 +
1622816611.1929848-CDS-M-pyrifera_M_contig7159:11444..116281622816611.1929848-CDS-M-pyrifera_M_contig7159:11444..11628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7159 11445..11628 +
1692278076.5794716-CDS-M-pyrifera_M_contig7159:11444..116281692278076.5794716-CDS-M-pyrifera_M_contig7159:11444..11628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7159 11445..11628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7159.17065.1prot_M-pyrifera_M_contig7159.17065.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7159 9412..11628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7159.17065.1

>prot_M-pyrifera_M_contig7159.17065.1 ID=prot_M-pyrifera_M_contig7159.17065.1|Name=mRNA_M-pyrifera_M_contig7159.17065.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
VVPDATDEEQSSDDEAPEEVSAAAATALAGRRRKAEQQARQAAAAPKRKR
ARSSKGGKNASDADDNAVAGRGGEGSGLVGGDELELPSDLLLKVKSGGLQ
RMEADVLAAKEMKEQAEAASATALSAGRRVRKKAGDLPRSDNFQLVVLDE
DDGGVGDGAGSKPAAAENARKFLRDRLGSRKRVSYSLLKARKRVGPSPNF
*
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mRNA from alignment at M-pyrifera_M_contig7159:9412..11628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7159.17065.1 ID=mRNA_M-pyrifera_M_contig7159.17065.1|Name=mRNA_M-pyrifera_M_contig7159.17065.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at M-pyrifera_M_contig7159:9412..11628+ (Macrocystis pyrifera P11B4 male)
GTTGTTCCAGACGCTACGGACGAGGAACAAAGCAGTGACGACGAGGCCCC
GGAAGAGGTAAGCGCCGCCGCGGCAACTGCTCTGGCGGGCCGTCGCAGGA
AGGCCGAGCAGCAGGCGCGCCAGGCCGCCGCCGCTCCGAAGAGAAAGCGC
GCGCGATCTTCCAAGGGTGGCAAAAACGCCTCCGATGCTGATGATAATGC
TGTAGCGGGGAGGGGGGGGGAGGGGTCGGGGTTGGTCGGAGGCGATGAGC
TTGAGCTTCCGTCGGACCTGCTGTTGAAGGTCAAGTCCGGGGGTTTGCAG
CGGATGGAGGCTGATGTTTTGGCGGCGAAGGAGATGAAGGAGCAGGCGGA
GGCTGCGTCGGCCACAGCGCTGTCGGCTGGAAGGAGGGTCAGGAAGAAGG
CCGGGGACCTCCCAAGGAGGTGGGACTGAGTCGCGGCGCGAATCCTATCG
AGACACGTGTGATATGATATTGTACTCTTATCGTACCTATTCCTGCAAGT
GTTATCGAGTTCCGACATCTCCGCTTACCCCTTTTGGTACTGGAGAGGCT
ATACTTTGGATGAGCCGAATAACGATTACAGCAGTATTTGCCATACGTCG
ATATTTGTAGCAACCCGGCGCTGCTGCTGTAGGTTAGAGCATGTATTTAG
GGGTTAAAAGAACATCAGCTGTGAGATCGAGGAAATCATCGAAACTCATC
GTTGCAGGCTGCGTGTCGTAGTTCGATGGCGCATACCACGGGTGTTATAT
GACCTCACCATGAAGGATATCGTATGTATATGATACCAGAACTAAAGCGC
AAATGCAGCACTATCTGCCACACGTATGAATAGCAACCCGGCACTGCTGT
AGGTTAGAGGATACACCTGATATACCACTCTGTGGACGGAAATGTAAGGA
TTGGTTGGTCTGCACATGTTGTAACCCGGAGGTCCTTACATTTCCGCCCA
GAGCCGTATCTGACACCGGAACTACTGTACATACAACCAGTGCAAGGTTG
CGCGACACACTCGCAGCGTGATACCGCTCGTACTGCTGATCGCTCACCCT
CGACGGTTGGTGATACACGGTGTCTCCACTTTTTGGATTGCTGTAGCTTC
GGGCCCCGAATGGGTTCGTATGACCAAGACTGTTCACGGGTCGGGTCAGA
CCTCGCGAGTCGGGTTGGGTAGGGTCGGGTCGGGCAAGGGTGTCCCGACC
CGATCCGTGAAAGTTTGAAAACCTTCTAACTCGACCCGACCCCACCCGAC
CCAACCCAACCGAACACGACCCGTGAGAGTTCGAAAATTTTCTGGCCATA
TCCGCGAGTTGGGGTCGTAAACCGCGAAGAGCCCTGATTAATACCCCCTT
GGCAGTTACAGCTGCACCCACGTTTTTGGGGACGAAATTCGTTGCATTAG
AGTGGGGTGATATTTCGGTGCTTGACGGGTTATCTTGCGTCGAAAATGCT
GTATACGGTGTACGGAATATTCTGCTTCCCCACAATACATTTCTTAACAG
GTGCCTGGGCAGTTTTTTTTCAGATTTTTTTCGGCATATGTTTGTGTGAG
ATTTCGGCGTCTCTCATTCTCTCGCTCTCTCCGATATCTCTATTACGATA
GACGATAGTAAATAGGACCAAATATTGTTGGTAAAAATAGGTAAATGTAT
AGTTTTTTGTGGGTGCCGTAGGTCCTATTTACTATGGTCCCCCGTAATAG
TCCGCGGAGCGTCCGTGCGACCCGTGTCGAGGCAAACACGCCTGCTCGCA
CGAAGTTTAACAAAGCGTCGTTTCCCCGAAACCTCCAATCGATTTCCGTT
TTTTGTTTTTAACTGCCAACCTTATGCTTCGCAGTAATGTTAATCGCAAT
CGAAAGTATTAAGATAGTGCGGTTTATTCCTGACGCCGCCACGCACTTTT
ACGCGAAACCATTTTTGTCAGGCGTGTCTCATGTCACCCCTTTTTTATTT
TTTAATCGTTTTTATTTGGCTGTCGTTTCGATCTCTTTTTTACTGGTACT
CTTATGTTCTCATTCCTGTTGTTATTCTCGCAGCGACAACTTTCAACTGG
TGGTTCTGGACGAGGACGACGGCGGCGTTGGCGACGGAGCAGGCAGCAAG
CCTGCAGCCGCAGAAAATGCGAGGAAATTTTTGCGCGACCGCCTGGGGAG
CCGAAAACGCGTCAGCTACAGCTTGTTGAAGGCTCGCAAGCGTGTCGGCC
CCTCGCCGAATTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7159:9412..11628+

>mRNA_M-pyrifera_M_contig7159.17065.1 ID=mRNA_M-pyrifera_M_contig7159.17065.1|Name=mRNA_M-pyrifera_M_contig7159.17065.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig7159:9412..11628+ (Macrocystis pyrifera P11B4 male)
GTTGTTCCAGACGCTACGGACGAGGAACAAAGCAGTGACGACGAGGCCCC
GGAAGAGGTAAGCGCCGCCGCGGCAACTGCTCTGGCGGGCCGTCGCAGGA
AGGCCGAGCAGCAGGCGCGCCAGGCCGCCGCCGCTCCGAAGAGAAAGCGC
GCGCGATCTTCCAAGGGTGGCAAAAACGCCTCCGATGCTGATGATAATGC
TGTAGCGGGGAGGGGGGGGGAGGGGTCGGGGTTGGTCGGAGGCGATGAGC
TTGAGCTTCCGTCGGACCTGCTGTTGAAGGTCAAGTCCGGGGGTTTGCAG
CGGATGGAGGCTGATGTTTTGGCGGCGAAGGAGATGAAGGAGCAGGCGGA
GGCTGCGTCGGCCACAGCGCTGTCGGCTGGAAGGAGGGTCAGGAAGAAGG
CCGGGGACCTCCCAAGGAGGTTGTTCCAGACGCTACGGACGAGGAACAAA
GCAGTGACGACGAGGCCCCGGAAGAGGTAAGCGCCGCCGCGGCAACTGCT
CTGGCGGGCCGTCGCAGGAAGGCCGAGCAGCAGGCGCGCCAGGCCGCCGC
CGCTCCGAAGAGAAAGCGCGCGCGATCTTCCAAGGGTGGCAAAAACGCCT
CCGATGCTGATGATAATGCTGTAGCGGGGAGGGGGGGGGAGGGGTCGGGG
TTGGTCGGAGGCGATGAGCTTGAGCTTCCGTCGGACCTGCTGTTGAAGGT
CAAGTCCGGGGGTTTGCAGCGGATGGAGGCTGATGTTTTGGCGGCGAAGG
AGATGAAGGAGCAGGCGGAGGCTGCGTCGGCCACAGCGCTGTCGGCTGGA
AGGAGGGTCAGGAAGAAGGCCGGGGACCTCCCAAGGAGCGACAACTTTCA
ACTGGTGGTTCTGGACGAGGACGACGGCGGCGTTGGCGACGGAGCAGGCA
GCAAGCCTGCAGCCGCAGAAAATGCGAGGAAATTTTTGCGCGACCGCCTG
GGGAGCCGAAAACGCGTCAGCTACAGCTTGTTGAAGGCTCGCAAGCGTGT
CGGCCCCTCGCCGAATTTTTGACGACAACTTTCAACTGGTGGTTCTGGAC
GAGGACGACGGCGGCGTTGGCGACGGAGCAGGCAGCAAGCCTGCAGCCGC
AGAAAATGCGAGGAAATTTTTGCGCGACCGCCTGGGGAGCCGAAAACGCG
TCAGCTACAGCTTGTTGAAGGCTCGCAAGCGTGTCGGCCCCTCGCCGAAT
TTTTGA
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