mRNA_M-pyrifera_M_contig7129.17003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7129.17003.1
Unique NamemRNA_M-pyrifera_M_contig7129.17003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7129.17003.1 vs. uniprot
Match: D7FVE2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE2_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 1.190e-85
Identity = 202/400 (50.50%), Postives = 249/400 (62.25%), Query Frame = 1 
Query:    1 RQVRSALVFQAVWRGRCTRATVYQLRAARRRELEETSGMYQEHRLATRLAAIEANQKKKEQAYQAQEQSAMRYARNRTSKAWNHLAQREETARAEELARMRAEERYTRALLDLELQDSQSADRARHEAAESVIMRLEDLTTQEVHRLEKAQAEECAVMGAEDALARKWKHIEKGRLAVSQSELRRMAVEDRTCSAWNAEHHREQKVLRLQTRARSTPIQRAMDPRGVAAARSLTCAIPHRSGSFAFGKSVRTRSEPRVEFGGSGELTKERT-------RRRECYTGLLDRISARSLNSLTTFKTATASKHPGK-VSGDSSRRGGNYDRPRGGA---ATAENNHVSPREGRAGPTERDGAECDLTADMLSHLGPLKDLAELELCVEGLTSASLLRECTSLK 1167
            ++ R A+VFQA+WRGRC RA V    A+R R+ EET  M+QE RLA R+ A+EA +++ E  +Q  E  AMRYA  RT  +W  L   EETAR EEL RMRAEER+TRAL+D+E+QD + A  A+ E  ES  M  EDL  +E+   EKAQ  E  VM AED LAR  K+ ++  LA S++E  RMA ED   + WNAE  R+++    +  ARSTPIQRA DPRGVAAAR+L CA             VRT S+P        EL  ERT       RRRE     LDRISA +L      + A  +K  G+ +SG      GN    RGG+    + E + VSP++ RAGP ERDGAEC LT+DMLSHLGPL+DL  LELCVEGLTSASLL+ CTSLK
Sbjct:   37 KRARCAVVFQAIWRGRCMRALVAPALASRPRQAEETRRMFQEERLAERVVALEAERRELELKHQYTELDAMRYAEKRTRASWAFLRHLEETARGEELVRMRAEERFTRALMDVEIQDLRRAQIAQREEEESSRMHAEDLAMRELKLAEKAQILERVVMQAEDMLARGLKNFKEQELASSRAEGYRMAAEDSASATWNAEFRRQREACLREAWARSTPIQRAADPRGVAAARALVCA-----------DGVRTPSKPEPS-----ELLDERTILMMEQARRREYCKRHLDRISASALRVRKDRQAAAHTKGLGRTLSGH-----GNKSGARGGSQGEVSFEEDLVSPKKDRAGPAERDGAECQLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLK 415
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BLAST of mRNA_M-pyrifera_M_contig7129.17003.1 vs. uniprot
Match: A0A6H5JF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF94_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 5.750e-77
Identity = 186/393 (47.33%), Postives = 232/393 (59.03%), Query Frame = 1 
Query:    1 RQVRSALVFQAVWRGRCTRATVYQLRAARRRELEETSGMYQEHRLATRLAAIEANQKKKEQAYQAQEQSAMRYARNRTSKAWNHLAQREETARAEELARMRAEERYTRALLDLELQDSQSADRARHEAAESVIMRLEDLTTQEVHRLEKAQAEECAVMGAEDALARKWKHIEKGRLAVSQSELRRMAVEDRTCSAWNAEHHREQKVLRLQTRARSTPIQRAMDPRGVAAARSLTCAIPHRSGSFAFGKSVRTRSEPRVEFGGSGELTKERTRRRECYTGLLDRISARSLNSLTTFKTATASKHPGKV----SGDSSRRGGNYDRPRGGAATAENNHVSPREGRAGPTERDGAECDLTADMLSHLGPLKDLAELELCVEGLTSASLLRECTSLK 1167
            ++ R A+VFQA+WRG C RA V    A+RRRE EE   M+QE RLA  + A+E  +++ E   Q  E  AMRYA  RT  +W      EETAR EEL RMRAEER TRAL+D+E+QD + A   + E  E   M  EDL  +E+   EKAQ  E  VM AED LAR  K+ ++  LA S++E  RMA ED   + WNAE  R+++    +  ARSTPIQRA+DPRG AAAR+L C           G    ++ EP         L  E+ RRRE     L RISA +L      + A  +K  G+        S  RGG+      G  + E N V+ ++ RAGP ERDGAEC LT+DMLSHLGPL+DL  LELCVEGLTSASLL+ CTSLK
Sbjct:   47 KRARCAVVFQAIWRGHCMRALVAPALASRRREAEEIQRMFQEERLAECVVALEEERREIELKRQCNELDAMRYAEKRTRTSWAFFRHLEETARGEELVRMRAEERLTRALVDVEIQDLRRAQIVQREEEELGRMCAEDLAMRELKLAEKAQMLERVVMQAEDILARGLKNFDEQELASSRAEGCRMAAEDSASATWNAEFRRQRETCLREAWARSTPIQRAVDPRGAAAARALVCTD---------GVRALSKPEPSELLDERMMLMIEQARRREYCKMHLYRISANALRVRKNRQAAVHTKGLGRTLLGHGNKSGARGGSQ-----GEVSFEENLVASKKDRAGPAERDGAECKLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLK 425
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7129.17003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVE2_ECTSI1.190e-8550.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF94_9PHAE5.750e-7747.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7129contigM-pyrifera_M_contig7129:6828..8719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue1.1e-77
Seed eggNOG ortholog2880.D7FVE2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_000780.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1240
Cds size1239
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7129.17003.1prot_M-pyrifera_M_contig7129.17003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7129 6829..8719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.5968912-CDS-M-pyrifera_M_contig7129:6828..75491622816607.5968912-CDS-M-pyrifera_M_contig7129:6828..7549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 6829..7549 -
1692278074.4278154-CDS-M-pyrifera_M_contig7129:6828..75491692278074.4278154-CDS-M-pyrifera_M_contig7129:6828..7549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 6829..7549 -
1622816607.6109164-CDS-M-pyrifera_M_contig7129:7898..81881622816607.6109164-CDS-M-pyrifera_M_contig7129:7898..8188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 7899..8188 -
1692278074.4413626-CDS-M-pyrifera_M_contig7129:7898..81881692278074.4413626-CDS-M-pyrifera_M_contig7129:7898..8188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 7899..8188 -
1622816607.6250412-CDS-M-pyrifera_M_contig7129:8491..87191622816607.6250412-CDS-M-pyrifera_M_contig7129:8491..8719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 8492..8719 -
1692278074.4522934-CDS-M-pyrifera_M_contig7129:8491..87191692278074.4522934-CDS-M-pyrifera_M_contig7129:8491..8719Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7129 8492..8719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7129.17003.1

>prot_M-pyrifera_M_contig7129.17003.1 ID=prot_M-pyrifera_M_contig7129.17003.1|Name=mRNA_M-pyrifera_M_contig7129.17003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=413bp
RQVRSALVFQAVWRGRCTRATVYQLRAARRRELEETSGMYQEHRLATRLA
AIEANQKKKEQAYQAQEQSAMRYARNRTSKAWNHLAQREETARAEELARM
RAEERYTRALLDLELQDSQSADRARHEAAESVIMRLEDLTTQEVHRLEKA
QAEECAVMGAEDALARKWKHIEKGRLAVSQSELRRMAVEDRTCSAWNAEH
HREQKVLRLQTRARSTPIQRAMDPRGVAAARSLTCAIPHRSGSFAFGKSV
RTRSEPRVEFGGSGELTKERTRRRECYTGLLDRISARSLNSLTTFKTATA
SKHPGKVSGDSSRRGGNYDRPRGGAATAENNHVSPREGRAGPTERDGAEC
DLTADMLSHLGPLKDLAELELCVEGLTSASLLRECTSLKSLSLNVNRLSS
PAGLVASTTLVRL
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mRNA from alignment at M-pyrifera_M_contig7129:6828..8719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7129.17003.1 ID=mRNA_M-pyrifera_M_contig7129.17003.1|Name=mRNA_M-pyrifera_M_contig7129.17003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1892bp|location=Sequence derived from alignment at M-pyrifera_M_contig7129:6828..8719- (Macrocystis pyrifera P11B4 male)
AGGCAAGTGAGGTCAGCGCTGGTTTTCCAGGCTGTGTGGAGGGGGCGTTG
CACGAGGGCGACCGTCTATCAGCTTCGTGCAGCTCGTCGACGAGAGTTGG
AGGAGACTAGTGGCATGTATCAAGAGCACCGGTTGGCGACACGTCTGGCC
GCAATTGAAGCAAATCAGAAGAAAAAGGAACAAGCATACCAAGCTCAAGA
GCAATCTGCCATGAGGTACGCAAGAAACGTGGGGAGCATGTGATATACGC
CTCTTCTGTCGCTGTAGACGGCATTTCGTCACGCCTTTCATAAAATAGGA
GACGAGCAGGCCGTCGCTGTAATAGGTCTATACTCGTCGCTGTTGCCGCC
CGCACTTCATAGAGGTGTCTATAGCGTGCTGACCGACTCAGCCCTTTATG
ATCTGTCTCCGTCGTGGACTCGTTGGCACCTTACATCGCTCCGCCCTATT
CCCGCGAACTGGATCATGTTCTGGATTGCACGTCCAACCTTCCGGTGTGT
ATGGTTTTGACCCCCAAGGGACGAAGACGAGCGAACGTCGAAAGCATGGA
ACCATCTCGCTCAACGCGAAGAAACCGCGAGGGCGGAGGAGCTAGCGCGA
ATGCGGGCTGAAGAGAGGTACACTCGCGCCCTGCTTGACCTCGAACTCCA
AGACTCTCAGAGCGCGGATAGAGCTCGGCACGAAGCAGCGGAGTCCGTCA
TTATGAGGTTGGAAGACCTCACGACGCAAGAGGTCCACCGTCTGGAGAAG
GCTCAGGCGGAGGAGTGTGCAGTGATGGGGGCTGAAGATGCGCTGGCCAG
AAAATGGAAACACATCGAAAAGTGAGCATAAAAAGTCGCGCGAGAGACGC
TTGTGTCATCCATGTACACCTATATAGAGTGTAGGCACACGGCGCATCCA
CAAGCAATTCTCAACCCGATGCCGTTTCGTGTGTACACTACTGTACGCCA
CCGAGGGCGCCAGGCTACATCCGCCATTCACAATGTTCGTCGCAACAACT
TGAGCGTCTGCCGACCCATCTAAACTACTACAGTACCTCGACTGCTCAGA
GTATTCTGCCGCACGTTTATGCCCTCTTTTCATCCATACGATCACGAAAT
TTGAGTTACGAGTTACGCCCCCCGCCAAATAGAGTTCCCGGCTGTTCGTA
TTTCCGCTTTTTTGTCCCAGGGGTAGGCTGGCAGTTTCACAGTCGGAATT
GCGCCGGATGGCGGTAGAAGATCGGACGTGCTCGGCTTGGAACGCCGAGC
ATCACCGCGAGCAGAAAGTACTTCGCTTGCAGACCCGCGCGAGATCGACC
CCTATTCAGCGGGCGATGGACCCCAGAGGCGTCGCCGCCGCACGCAGCTT
GACATGCGCGATCCCTCATCGGTCCGGCAGTTTCGCGTTCGGGAAAAGCG
TTCGGACGAGGTCTGAACCGCGGGTAGAATTCGGGGGCAGCGGAGAACTG
ACGAAGGAACGGACGAGGCGTAGGGAGTGCTACACAGGGCTCCTGGACAG
AATTTCAGCAAGGTCTCTGAATAGCTTGACTACATTCAAAACTGCCACAG
CTTCCAAGCATCCCGGTAAAGTTTCTGGCGACAGCAGTCGTCGCGGCGGC
AACTACGATCGTCCTCGCGGGGGTGCGGCTACCGCAGAGAATAATCACGT
CTCACCCCGGGAGGGCAGAGCGGGGCCGACAGAGAGGGACGGCGCGGAGT
GTGACCTCACCGCTGACATGCTCTCTCACCTAGGGCCTCTGAAAGACCTC
GCGGAGCTCGAGCTGTGCGTGGAGGGACTGACGTCGGCGTCGTTGCTCCG
GGAGTGCACGTCGCTCAAGTCGCTTTCGCTTAACGTGAACCGACTGTCGT
CACCCGCGGGCCTGGTTGCGAGCACGACGCTCGTACGGTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7129:6828..8719-

>mRNA_M-pyrifera_M_contig7129.17003.1 ID=mRNA_M-pyrifera_M_contig7129.17003.1|Name=mRNA_M-pyrifera_M_contig7129.17003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2478bp|location=Sequence derived from alignment at M-pyrifera_M_contig7129:6828..8719- (Macrocystis pyrifera P11B4 male)
AGGCAAGTGAGGTCAGCGCTGGTTTTCCAGGCTGTGTGGAGGGGGCGTTG
CACGAGGGCGACCGTCTATCAGCTTCGTGCAGCTCGTCGACGAGAGTTGG
AGGAGACTAGTGGCATGTATCAAGAGCACCGGTTGGCGACACGTCTGGCC
GCAATTGAAGCAAATCAGAAGAAAAAGGAACAAGCATACCAAGCTCAAGA
GCAATCTGCCATGAGGTACGCAAGAAACAGGCAAGTGAGGTCAGCGCTGG
TTTTCCAGGCTGTGTGGAGGGGGCGTTGCACGAGGGCGACCGTCTATCAG
CTTCGTGCAGCTCGTCGACGAGAGTTGGAGGAGACTAGTGGCATGTATCA
AGAGCACCGGTTGGCGACACGTCTGGCCGCAATTGAAGCAAATCAGAAGA
AAAAGGAACAAGCATACCAAGCTCAAGAGCAATCTGCCATGAGGTACGCA
AGAAACCGAACGTCGAAAGCATGGAACCATCTCGCTCAACGCGAAGAAAC
CGCGAGGGCGGAGGAGCTAGCGCGAATGCGGGCTGAAGAGAGGTACACTC
GCGCCCTGCTTGACCTCGAACTCCAAGACTCTCAGAGCGCGGATAGAGCT
CGGCACGAAGCAGCGGAGTCCGTCATTATGAGGTTGGAAGACCTCACGAC
GCAAGAGGTCCACCGTCTGGAGAAGGCTCAGGCGGAGGAGTGTGCAGTGA
TGGGGGCTGAAGATGCGCTGGCCAGAAAATGGAAACACATCGAAAACGAA
CGTCGAAAGCATGGAACCATCTCGCTCAACGCGAAGAAACCGCGAGGGCG
GAGGAGCTAGCGCGAATGCGGGCTGAAGAGAGGTACACTCGCGCCCTGCT
TGACCTCGAACTCCAAGACTCTCAGAGCGCGGATAGAGCTCGGCACGAAG
CAGCGGAGTCCGTCATTATGAGGTTGGAAGACCTCACGACGCAAGAGGTC
CACCGTCTGGAGAAGGCTCAGGCGGAGGAGTGTGCAGTGATGGGGGCTGA
AGATGCGCTGGCCAGAAAATGGAAACACATCGAAAAGGGTAGGCTGGCAG
TTTCACAGTCGGAATTGCGCCGGATGGCGGTAGAAGATCGGACGTGCTCG
GCTTGGAACGCCGAGCATCACCGCGAGCAGAAAGTACTTCGCTTGCAGAC
CCGCGCGAGATCGACCCCTATTCAGCGGGCGATGGACCCCAGAGGCGTCG
CCGCCGCACGCAGCTTGACATGCGCGATCCCTCATCGGTCCGGCAGTTTC
GCGTTCGGGAAAAGCGTTCGGACGAGGTCTGAACCGCGGGTAGAATTCGG
GGGCAGCGGAGAACTGACGAAGGAACGGACGAGGCGTAGGGAGTGCTACA
CAGGGCTCCTGGACAGAATTTCAGCAAGGTCTCTGAATAGCTTGACTACA
TTCAAAACTGCCACAGCTTCCAAGCATCCCGGTAAAGTTTCTGGCGACAG
CAGTCGTCGCGGCGGCAACTACGATCGTCCTCGCGGGGGTGCGGCTACCG
CAGAGAATAATCACGTCTCACCCCGGGAGGGCAGAGCGGGGCCGACAGAG
AGGGACGGCGCGGAGTGTGACCTCACCGCTGACATGCTCTCTCACCTAGG
GCCTCTGAAAGACCTCGCGGAGCTCGAGCTGTGCGTGGAGGGACTGACGT
CGGCGTCGTTGCTCCGGGAGTGCACGTCGCTCAAGTCGCTTTCGCTTAAC
GTGAACCGACTGTCGTCACCCGCGGGCCTGGTTGCGAGCACGACGCTCGT
ACGGTTGGGGTAGGCTGGCAGTTTCACAGTCGGAATTGCGCCGGATGGCG
GTAGAAGATCGGACGTGCTCGGCTTGGAACGCCGAGCATCACCGCGAGCA
GAAAGTACTTCGCTTGCAGACCCGCGCGAGATCGACCCCTATTCAGCGGG
CGATGGACCCCAGAGGCGTCGCCGCCGCACGCAGCTTGACATGCGCGATC
CCTCATCGGTCCGGCAGTTTCGCGTTCGGGAAAAGCGTTCGGACGAGGTC
TGAACCGCGGGTAGAATTCGGGGGCAGCGGAGAACTGACGAAGGAACGGA
CGAGGCGTAGGGAGTGCTACACAGGGCTCCTGGACAGAATTTCAGCAAGG
TCTCTGAATAGCTTGACTACATTCAAAACTGCCACAGCTTCCAAGCATCC
CGGTAAAGTTTCTGGCGACAGCAGTCGTCGCGGCGGCAACTACGATCGTC
CTCGCGGGGGTGCGGCTACCGCAGAGAATAATCACGTCTCACCCCGGGAG
GGCAGAGCGGGGCCGACAGAGAGGGACGGCGCGGAGTGTGACCTCACCGC
TGACATGCTCTCTCACCTAGGGCCTCTGAAAGACCTCGCGGAGCTCGAGC
TGTGCGTGGAGGGACTGACGTCGGCGTCGTTGCTCCGGGAGTGCACGTCG
CTCAAGTCGCTTTCGCTTAACGTGAACCGACTGTCGTCACCCGCGGGCCT
GGTTGCGAGCACGACGCTCGTACGGTTG
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