mRNA_M-pyrifera_M_contig71277.16998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71277.16998.1
Unique NamemRNA_M-pyrifera_M_contig71277.16998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A7S3FGN0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FGN0_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.730e-21
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   37 VTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDPLE 375
            V++ +K  EGV V+V L   R   S  M      LA +  + KF+QI   + IPGYP KN+PT+LVY+D ++ Q  VGLSHFGG    G + +EW LA  G ++TEL   P E
Sbjct:   72 VSQVNKAGEGVAVVVLLVKPRHYASAYMLTLLEKLAKKFADVKFLQILYSDCIPGYPEKNLPTLLVYRDDDLLQQFVGLSHFGGSS-YGIDDVEWELAQAGILRTELERSPHE 183          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: D8LFX7_ECTSI (Phosducin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFX7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.830e-20
Identity = 46/119 (38.66%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   13 SRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDP 369
            S+++WV EVT+ASK    V V+ HL ++       ME     +A++  E KFV+IR+++A+  +P  N+PT+ +Y+DGE+A+ L+ +   GGK+    + LEW LAS G ++TE+  +P
Sbjct:  118 SKADWVREVTDASKS---VCVVAHLYEDGIVECRVMEAALRSIASKFREVKFVKIRSQQAVENWPEANLPTLFIYRDGELAKQLIRIDALGGKQMKADD-LEWYLASQGIVETEMDENP 232          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A4D9CPR5_9STRA (Phosducin domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPR5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-19
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   16 RSEWVSEVTEASK-------GKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDPLE 375
            + +WV EVTE SK       G+ G+ V+VHL  +R      +E     +A +    KF++IR+  AI  +P +N+PT+ VY+DGE+   ++GL   GGK+    + LEW LA  G ++TE+  DP E
Sbjct:  135 KEDWVREVTEGSKAGGKGSGGEGGLWVVVHLYQDRVEDCRVLEEVLRAVAAKFKAVKFLKIRSTSAIENWPDRNLPTLFVYRDGELRTQMLGLKKVGGKKAQARD-LEWWLAQAGVVETEMEEDPRE 260          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A2P6N065_9EUKA (Phosducin-like protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N065_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 3.380e-19
Identity = 54/121 (44.63%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   13 SRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDPLE 375
            S   +  EVTEA      V V+V L          ME     LA +   TKFVQIR+EEAI GYP KN+PT+LVY  G VA+  VGL  F G+     +V EW L   GA++TE+ +DP E
Sbjct:  118 SEPSYKKEVTEAGD----VWVVVFLYKSGIPHCQLMEQRLRQLARKFKATKFVQIRSEEAIRGYPDKNLPTLLVYHKGNVARQFVGLQEFAGESTTADDV-EWALGQLGAVQTEIETDPRE 233          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A7R9Y1D7_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y1D7_9VIRI)

HSP 1 Score: 86.7 bits (213), Expect = 4.760e-19
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VRLSSRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVG--LSHFGGKRRLGPEVLEWVLASTGAIKTE 354
            +R  S +EW  EVTEAS+    V ++ H  D   A S A+      +A R P TKFV++ A +A+P YP +  PT++VY  G+V QN+ G  L+ FGG +RL PE +E VL   GA+  E
Sbjct:   21 LRPMSAAEWTKEVTEASEECRVVVLMEHAGD---APSDALAECLVAIAKRCPRTKFVRVPATDAVPRYPQRLCPTVIVYHKGDVVQNIAGRELAVFGGAKRLTPESVELVLERCGALDGE 137          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A1I8G7N0_9PLAT (Phosducin domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8G7N0_9PLAT)

HSP 1 Score: 88.6 bits (218), Expect = 5.280e-19
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    1 VRLSSRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAI-KTELTSDP 369
            VR  SR++W  EV EA +    V V+V +  +   GS  +E     LA + P+ KFV+  A+  IP YP KNVPTIL+YK+  + +  +GL  FGG +   P+ LEW+L   G + +TEL +DP
Sbjct:  104 VREISRADWKREVNEAGQD---VPVVVLITRQGLVGSKLLEDCHRRLAAKFPQVKFVRGEADNCIPNYPDKNVPTILLYKNDGLIKQWIGLDSFGGSKA-SPDALEWMLGKEGGVLQTELEADP 223          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A812ZEL1_9DINO (Viaf protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZEL1_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-18
Identity = 48/121 (39.67%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   16 RSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRR---LGPEVLEWVLASTGAIKTELTSDP 369
            R E+  EVTE SK      V+V L ++    S A++     LA +H   KF++I+A++ I G+P +NVPT+L+Y +GE  + L+G   +GGKR    +  + +EWVLA  G + T+LT DP
Sbjct:  105 RDEYTKEVTEGSKE---CWVVVLLYNDAVDASRALQEVLERLAPKHKAVKFLRIKADQCIEGFPDRNVPTLLLYHEGENQRQLMGPGVYGGKRNGAGITEDTVEWVLADEGVLSTDLTEDP 222          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: B7QJ30_IXOSC (ATP binding protein, putative n=5 Tax=Ixodes TaxID=6944 RepID=B7QJ30_IXOSC)

HSP 1 Score: 87.0 bits (214), Expect = 1.840e-18
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 VRLSSRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDP 369
            VR  S  ++V +V +A    EGV V++HL          +  H + LAT+ P TKF++  A   IP YP +NVPTI VY+DG++ +  VG   FG  + L  + LEW+L+  GA++++L  DP
Sbjct:   98 VREISADDYVEQVNKAG---EGVWVVLHLYQPGVPYCTLISQHLSQLATKFPTTKFLKSVATNCIPNYPDRNVPTIFVYRDGQLCKQFVGPDVFGSMK-LKVDELEWMLSKVGAVQSDLEEDP 216          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: A0A401S992_CHIPU (Phosducin domain-containing protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401S992_CHIPU)

HSP 1 Score: 88.2 bits (217), Expect = 2.540e-18
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   22 EWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDP 369
            ++V EVT+A KG   V VI+HL  +       +  H + LA   PETKF++  +   IP YP +N+PTI VY+DG++    VG   FGG   L  + LEW L+ +GAIKTEL  +P
Sbjct:  191 DYVQEVTKAGKG---VWVILHLYKQGIPLCALVNQHLSELARMFPETKFIKAISTTCIPNYPDRNLPTIFVYRDGDIKAQYVGPLVFGGMN-LTKDELEWKLSDSGAIKTELEENP 302          
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Match: G1SFH8_RABIT (Phosducin like 3 n=11 Tax=Eutheria TaxID=9347 RepID=G1SFH8_RABIT)

HSP 1 Score: 85.9 bits (211), Expect = 5.260e-18
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   13 SRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATRHPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRLGPEVLEWVLASTGAIKTELTSDP 369
            S  ++V EVT+A    EG+ VI+HL  +       +  HF+ LA + P+ KF++  +   IP YP +N+PT+ VY +GE+    VG   FGG   L  + LEW LA +GAIKT+L  +P
Sbjct:   99 SGKDYVQEVTKAG---EGLWVILHLYKQGIPLCALINQHFSALARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYLEGEIKAQFVGPLVFGGMN-LTRDELEWKLAKSGAIKTDLEENP 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71277.16998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3FGN0_9EUKA3.730e-2144.25Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
D8LFX7_ECTSI3.830e-2038.66Phosducin domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9CPR5_9STRA1.010e-1937.80Phosducin domain-containing protein n=1 Tax=Nannoc... [more]
A0A2P6N065_9EUKA3.380e-1944.63Phosducin-like protein n=1 Tax=Planoprotostelium f... [more]
A0A7R9Y1D7_9VIRI4.760e-1942.50Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A1I8G7N0_9PLAT5.280e-1941.13Phosducin domain-containing protein n=2 Tax=Macros... [more]
A0A812ZEL1_9DINO1.710e-1839.67Viaf protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
B7QJ30_IXOSC1.840e-1839.02ATP binding protein, putative n=5 Tax=Ixodes TaxID... [more]
A0A401S992_CHIPU2.540e-1843.10Phosducin domain-containing protein n=1 Tax=Chilos... [more]
G1SFH8_RABIT5.260e-1840.34Phosducin like 3 n=11 Tax=Eutheria TaxID=9347 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71277contigM-pyrifera_M_contig71277:779..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue5.4e-17
Seed eggNOG ortholog2880.D8LFX7
Preferred namePDCL3
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001936,GO:0001938,GO:0003674,GO:0003779,GO:0005102,GO:0005126,GO:0005172,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008284,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010941,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019236,GO:0019438,GO:0022603,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031683,GO:0032268,GO:0032269,GO:0034404,GO:0034641,GO:0034654,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042455,GO:0042981,GO:0043067,GO:0043184,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0044183,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045765,GO:0045766,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050679,GO:0050730,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0080090,GO:1901135,GO:1901137,GO:1901342,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1904018,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000116,GO:2001141
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsKOG3170@1,KOG3170@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.3841352-CDS-M-pyrifera_M_contig71277:778..11531622816607.3841352-CDS-M-pyrifera_M_contig71277:778..1153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71277 779..1153 -
1692278074.2819164-CDS-M-pyrifera_M_contig71277:778..11531692278074.2819164-CDS-M-pyrifera_M_contig71277:778..1153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71277 779..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71277.16998.1prot_M-pyrifera_M_contig71277.16998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71277 779..1153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71277.16998.1

>prot_M-pyrifera_M_contig71277.16998.1 ID=prot_M-pyrifera_M_contig71277.16998.1|Name=mRNA_M-pyrifera_M_contig71277.16998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
VRLSSRSEWVSEVTEASKGKEGVTVIVHLADEREAGSVAMEPHFAVLATR
HPETKFVQIRAEEAIPGYPSKNVPTILVYKDGEVAQNLVGLSHFGGKRRL
GPEVLEWVLASTGAIKTELTSDPLE
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mRNA from alignment at M-pyrifera_M_contig71277:779..1153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71277.16998.1 ID=mRNA_M-pyrifera_M_contig71277.16998.1|Name=mRNA_M-pyrifera_M_contig71277.16998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig71277:779..1153- (Macrocystis pyrifera P11B4 male)
GTTCGGTTGTCATCTCGTAGTGAGTGGGTTTCAGAAGTTACCGAGGCATC GAAAGGCAAAGAAGGAGTGACTGTCATTGTTCATTTAGCTGATGAAAGAG AAGCTGGCTCTGTAGCAATGGAACCCCATTTCGCAGTTTTGGCAACCAGA CATCCAGAAACGAAATTTGTACAAATTCGAGCAGAAGAAGCGATCCCAGG TTACCCAAGCAAGAATGTTCCAACCATTCTGGTGTACAAAGATGGAGAAG TGGCCCAAAACCTTGTTGGCTTGTCACATTTTGGTGGGAAACGCAGGTTA GGTCCAGAAGTGCTTGAATGGGTGTTGGCAAGCACAGGTGCTATCAAAAC TGAGCTCACAAGTGATCCACTTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71277:779..1153-

>mRNA_M-pyrifera_M_contig71277.16998.1 ID=mRNA_M-pyrifera_M_contig71277.16998.1|Name=mRNA_M-pyrifera_M_contig71277.16998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig71277:779..1153- (Macrocystis pyrifera P11B4 male)
GTTCGGTTGTCATCTCGTAGTGAGTGGGTTTCAGAAGTTACCGAGGCATC
GAAAGGCAAAGAAGGAGTGACTGTCATTGTTCATTTAGCTGATGAAAGAG
AAGCTGGCTCTGTAGCAATGGAACCCCATTTCGCAGTTTTGGCAACCAGA
CATCCAGAAACGAAATTTGTACAAATTCGAGCAGAAGAAGCGATCCCAGG
TTACCCAAGCAAGAATGTTCCAACCATTCTGGTGTACAAAGATGGAGAAG
TGGCCCAAAACCTTGTTGGCTTGTCACATTTTGGTGGGAAACGCAGGTTA
GGTCCAGAAGTGCTTGAATGGGTGTTGGCAAGCACAGGTGCTATCAAAAC
TGAGCTCACAAGTGATCCACTTGAAGTTCGGTTGTCATCTCGTAGTGAGT
GGGTTTCAGAAGTTACCGAGGCATCGAAAGGCAAAGAAGGAGTGACTGTC
ATTGTTCATTTAGCTGATGAAAGAGAAGCTGGCTCTGTAGCAATGGAACC
CCATTTCGCAGTTTTGGCAACCAGACATCCAGAAACGAAATTTGTACAAA
TTCGAGCAGAAGAAGCGATCCCAGGTTACCCAAGCAAGAATGTTCCAACC
ATTCTGGTGTACAAAGATGGAGAAGTGGCCCAAAACCTTGTTGGCTTGTC
ACATTTTGGTGGGAAACGCAGGTTAGGTCCAGAAGTGCTTGAATGGGTGT
TGGCAAGCACAGGTGCTATCAAAACTGAGCTCACAAGTGATCCACTTGAA
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