mRNA_M-pyrifera_M_contig71197.16982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71197.16982.1
Unique NamemRNA_M-pyrifera_M_contig71197.16982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A7S0K2L1_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K2L1_CAFRO)

HSP 1 Score: 155 bits (393), Expect = 5.740e-42
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 LEMKQLGP-GYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            ++M+  G  GYRGVV  R + AGE  L+VD R LITVE GK T VG++M  A PPL LSAAKHC+T VF+L D E+  SFF+PYY+ LP+SF S+P+FW  +QL WL+GS++  QV DRR N+  DY EICR
Sbjct:  195 IKMQSFGDEGYRGVVMARDVEAGEEILAVDRRCLITVEHGKATPVGQRMLMASPPLRLSAAKHCYTVVFILLDQERGGSFFQPYYDALPKSFPSMPLFWPREQLQWLKGSYILTQVADRRRNLEKDYHEICR 326          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A5A8E7W7_CAFRO (SET domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E7W7_CAFRO)

HSP 1 Score: 155 bits (393), Expect = 1.830e-41
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 LEMKQLGP-GYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            ++M+  G  GYRGVV  R + AGE  L+VD R LITVE GK T VG++M  A PPL LSAAKHC+T VF+L D E+  SFF+PYY+ LP+SF S+P+FW  +QL WL+GS++  QV DRR N+  DY EICR
Sbjct:  518 IKMQSFGDEGYRGVVMARDVEAGEEILAVDRRCLITVEHGKATPVGQRMLMASPPLRLSAAKHCYTVVFILLDQERGGSFFQPYYDALPKSFPSMPLFWPREQLQWLKGSYILTQVADRRRNLEKDYHEICR 649          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A5A8D5H3_CAFRO (SET domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5H3_CAFRO)

HSP 1 Score: 153 bits (386), Expect = 9.760e-41
Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 LEMKQLGP-GYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            ++M+  G  GYRGVV  R   AGE  L+VD R LITVE GK T VG++M  A PPL LSAAKHC+T VF+L D E+  SFF+PYY+ LP++F S+P+FW  +QL WL+GS++  QV DRR N+  DY EICR
Sbjct:  278 IKMQSFGDEGYRGVVMARDAEAGEEILAVDRRCLITVEHGKATPVGQRMLMASPPLRLSAAKHCYTVVFILLDQERGGSFFQPYYDALPKAFPSMPLFWPREQLQWLKGSYILTQVADRRRNLEKDYHEICR 409          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A812KLU4_9DINO (SETD3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KLU4_9DINO)

HSP 1 Score: 140 bits (354), Expect = 1.410e-36
Identity = 65/131 (49.62%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            L MK+   G RGV  R  +      +++D +FLITVEMG+  S+GR+M +A PPL  SA+KHC+T VF+  DM   DSFF+PYY +LP +F ++P+FW  +QL WL+GS++ QQV DR++NI  DY++I R
Sbjct:  134 LYMKKYMEGNRGVHCREDVPPETEIMAIDRKFLITVEMGRACSIGRKMQAANPPLIFSASKHCYTTVFICMDMLNEDSFFQPYYRILPEAFPNMPLFWSDEQLQWLQGSYLLQQVEDRKANIKRDYEQIIR 264          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A835ZC89_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC89_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.760e-31
Identity = 65/130 (50.00%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEIC 390
            LE+      +RG+ A   + A E  + V ++ LITVEMGK T VGR + +A P  +L A KH +  +FLL D  + DSFFRPYY+MLP S S++PVFW   +L+WLRGSF+ +QV DRR+ IAADY  +C
Sbjct:   57 LEVHSYDEEFRGMHASCDLPADERIIEVPLKCLITVEMGKETPVGRAVVAADP--DLDAPKHIYLMLFLLTDRLRADSFFRPYYDMLPPSLSNMPVFWEDAKLAWLRGSFMVRQVADRRAAIAADYAAVC 184          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A2D4BYU5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYU5_PYTIN)

HSP 1 Score: 122 bits (305), Expect = 1.340e-29
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPD-SFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            L +++  P  RGV +++ +  GE  L V  + LITVEMGK T +G+Q+ +    LE  A KH F  +FLL DME  D SF+RPYY+ LP++ S++P+FW  ++L WL+GS++ QQ+ +R++ I  DYD ICR
Sbjct:  524 LTLREYAPEVRGVHSQKVLVPGERILVVPQKCLITVEMGKMTPIGQQLLAH--NLEFVAPKHIFLMMFLLHDMEHMDESFYRPYYQTLPKTLSNMPIFWSDEELQWLKGSYIVQQIQERKAAIRKDYDAICR 653          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A2P4XXZ8_9STRA (Histone-lysine N-methyltransferase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXZ8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.600e-29
Identity = 57/132 (43.18%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPD-SFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            L +++  P  RGV +R+ +  GE  L +  + L+TVEMGK+T +GR++ +    ++  A KH +  +FLL DME  + SFFR YY  LP + S++P+FW  D+LSWL+GS++ QQ+ +R++ I  DYD ICR
Sbjct:   46 LTLQEYAPEVRGVHSRKVLVPGERILVIPKKCLVTVEMGKQTDIGRKLLAR--NVDFVAPKHIYLMMFLLTDMEHMETSFFRNYYSTLPSTLSNMPIFWSDDELSWLKGSYIIQQIQERKAAIRKDYDVICR 175          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A8K1FRU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRU8_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 4.450e-29
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEK-PDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            L +++  P  RGV +++ +  GE  L +  + LITVEMGK T +G+++ +    LE  A KH F  +FLL DME+  +SF+RPYY  LP++  ++P+FW  D+LSWL GS++ QQ+ +R++ I  DYD ICR
Sbjct:  103 LALREYAPEVRGVHSKKVLVPGERILVIPKKCLITVEMGKMTEIGQKLLAH--NLEFVAPKHIFLMMFLLTDMERIEESFYRPYYNTLPKTLQNMPIFWSDDELSWLTGSYIIQQIQERKAAIRKDYDAICR 232          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A7R9UGQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGQ6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.980e-29
Identity = 58/130 (44.62%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    1 LEMKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEIC 390
            LE+K      RGV A+  I +  + +S+ +  LITVEMGK T +GR++  A   L+L A KH F  +F+L DM    SFF+PYY++LP+  S++P+FW  D+L +L GS++ QQ+ DR+  I  DYD IC
Sbjct:   46 LEIKCYDDEVRGVHAKEDIKSDTLCISIPLNCLITVEMGKDTEIGRKILDAR--LDLDAPKHVFLMLFMLTDMRNESSFFKPYYDILPQKMSNMPIFWTDDELRYLEGSYMLQQIADRKEAIIEDYDAIC 173          
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Match: A0A7S4D6X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X9_HETAK)

HSP 1 Score: 117 bits (294), Expect = 1.980e-28
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   31 RGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSALPPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQLSWLRGSFVQQQVLDRRSNIAADYDEICR 393
            RGV A+R+I A    + +   FL+T+E  K+T +G ++  A    ELSA KHC+ ++ +L D +   SFF+PYY  LPRS+S++P+FW  + L  L GS +  Q+ DR+ NI ADYDEICR
Sbjct:   65 RGVHAKRQIPANRQVMVIPQNFLLTLEKAKQTEIGLKLEKA----ELSARKHCYLSILVLIDRKDAQSFFQPYYRTLPRSYSNMPIFWNENDLELLEGSHILSQIEDRKRNIRADYDEICR 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71197.16982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0K2L1_CAFRO5.740e-4257.58Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8E7W7_CAFRO1.830e-4157.58SET domain-containing protein n=3 Tax=Cafeteria ro... [more]
A0A5A8D5H3_CAFRO9.760e-4156.82SET domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A812KLU4_9DINO1.410e-3649.62SETD3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A835ZC89_9STRA2.760e-3150.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2D4BYU5_PYTIN1.340e-2945.45Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A2P4XXZ8_9STRA2.600e-2943.18Histone-lysine N-methyltransferase (Fragment) n=1 ... [more]
A0A8K1FRU8_PYTOL4.450e-2943.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9UGQ6_9STRA8.980e-2944.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4D6X9_HETAK1.980e-2845.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71197contigM-pyrifera_M_contig71197:11..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue8e-24
Seed eggNOG ortholog67593.Physo136702
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rubisco LSMT substrate-binding
EggNOG OGs3QDRE@4776,KOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size393
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.372585-CDS-M-pyrifera_M_contig71197:10..3971622816606.372585-CDS-M-pyrifera_M_contig71197:10..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71197 11..397 -
1692278073.6616268-CDS-M-pyrifera_M_contig71197:10..3971692278073.6616268-CDS-M-pyrifera_M_contig71197:10..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71197 11..397 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.3832037-UTR-M-pyrifera_M_contig71197:397..4031622816606.3832037-UTR-M-pyrifera_M_contig71197:397..403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71197 398..403 -
1692278073.677704-UTR-M-pyrifera_M_contig71197:397..4031692278073.677704-UTR-M-pyrifera_M_contig71197:397..403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71197 398..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71197.16982.1prot_M-pyrifera_M_contig71197.16982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71197 11..397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71197.16982.1

>prot_M-pyrifera_M_contig71197.16982.1 ID=prot_M-pyrifera_M_contig71197.16982.1|Name=mRNA_M-pyrifera_M_contig71197.16982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MKQLGPGYRGVVARRRIGAGEMALSVDVRFLITVEMGKRTSVGRQMSSAL
PPLELSAAKHCFTAVFLLQDMEKPDSFFRPYYEMLPRSFSSVPVFWGPDQ
LSWLRGSFVQQQVLDRRSNIAADYDEICR
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mRNA from alignment at M-pyrifera_M_contig71197:11..403-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71197.16982.1 ID=mRNA_M-pyrifera_M_contig71197.16982.1|Name=mRNA_M-pyrifera_M_contig71197.16982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig71197:11..403- (Macrocystis pyrifera P11B4 male)
TTGGAGATGAAGCAGCTAGGGCCTGGGTATCGTGGTGTTGTTGCTCGTCG CCGCATAGGTGCTGGCGAGATGGCGTTGAGTGTGGACGTTCGTTTTTTGA TCACTGTGGAGATGGGGAAACGAACGAGCGTGGGCAGGCAAATGTCGAGT GCACTGCCTCCTCTGGAGCTGTCAGCAGCCAAGCACTGCTTCACCGCCGT CTTCTTGCTGCAGGACATGGAGAAACCCGACTCTTTCTTCCGCCCTTACT ACGAAATGCTCCCTCGATCCTTCTCCTCCGTGCCAGTGTTCTGGGGGCCC GATCAGCTCTCGTGGCTACGAGGGAGCTTTGTGCAACAGCAAGTGCTTGA TCGACGGTCCAACATTGCCGCTGACTATGACGAAATCTGTAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71197:11..403-

>mRNA_M-pyrifera_M_contig71197.16982.1 ID=mRNA_M-pyrifera_M_contig71197.16982.1|Name=mRNA_M-pyrifera_M_contig71197.16982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig71197:11..403- (Macrocystis pyrifera P11B4 male)
ATGAAGCAGCTAGGGCCTGGGTATCGTGGTGTTGTTGCTCGTCGCCGCAT
AGGTGCTGGCGAGATGGCGTTGAGTGTGGACGTTCGTTTTTTGATCACTG
TGGAGATGGGGAAACGAACGAGCGTGGGCAGGCAAATGTCGAGTGCACTG
CCTCCTCTGGAGCTGTCAGCAGCCAAGCACTGCTTCACCGCCGTCTTCTT
GCTGCAGGACATGGAGAAACCCGACTCTTTCTTCCGCCCTTACTACGAAA
TGCTCCCTCGATCCTTCTCCTCCGTGCCAGTGTTCTGGGGGCCCGATCAG
CTCTCGTGGCTACGAGGGAGCTTTGTGCAACAGCAAGTGCTTGATCGACG
GTCCAACATTGCCGCTGACTATGACGAAATCTGTAGAATGAAGCAGCTAG
GGCCTGGGTATCGTGGTGTTGTTGCTCGTCGCCGCATAGGTGCTGGCGAG
ATGGCGTTGAGTGTGGACGTTCGTTTTTTGATCACTGTGGAGATGGGGAA
ACGAACGAGCGTGGGCAGGCAAATGTCGAGTGCACTGCCTCCTCTGGAGC
TGTCAGCAGCCAAGCACTGCTTCACCGCCGTCTTCTTGCTGCAGGACATG
GAGAAACCCGACTCTTTCTTCCGCCCTTACTACGAAATGCTCCCTCGATC
CTTCTCCTCCGTGCCAGTGTTCTGGGGGCCCGATCAGCTCTCGTGGCTAC
GAGGGAGCTTTGTGCAACAGCAAGTGCTTGATCGACGGTCCAACATTGCC
GCTGACTATGACGAAATCTGTAGA
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