mRNA_M-pyrifera_M_contig71195.16981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71195.16981.1
Unique NamemRNA_M-pyrifera_M_contig71195.16981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: C1BS50_LEPSM (DNA-directed RNA polymerase subunit n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BS50_LEPSM)

HSP 1 Score: 105 bits (262), Expect = 5.870e-28
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   34 VDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 207
            VDDVLGG  AW+NVD T+ TCPNC+H RAY+ Q+QTRSADEPMTTFY+CVSC H W+E
Sbjct:   51 VDDVLGGSAAWENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVSCGHRWRE 108
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A095C664_CRYGR (DNA-directed RNA polymerase subunit n=9 Tax=Cryptococcaceae TaxID=1884633 RepID=A0A095C664_CRYGR)

HSP 1 Score: 103 bits (258), Expect = 2.380e-27
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   13 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 210
            T L +  VDDVLGG +AW NVD+TDT CP C+H+RAY+RQ+Q RSADEPMTTFY+C  C H W+E 
Sbjct:   43 THLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREN 108
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A7S3BLY1_9VIRI (DNA-directed RNA polymerase subunit n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BLY1_9VIRI)

HSP 1 Score: 104 bits (259), Expect = 2.650e-27
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    7 QSTVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 210
            Q   L +  VDDVLGGD+AW+NVD+T T CP C H  AYY Q+Q RSADEPM+TFY+CV C H W+EG
Sbjct:   57 QDVPLVRKQVDDVLGGDEAWENVDKTLTKCPQCAHNEAYYMQIQIRSADEPMSTFYKCVKCSHRWREG 124
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: UPI001D025382 (DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D025382)

HSP 1 Score: 103 bits (257), Expect = 3.200e-27
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   34 VDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 210
            +DDVLGG++AW NV+ T+ TCP C+HKRAY+ Q+QTRSADEPMT FYRC  C +NWKEG
Sbjct:   48 IDDVLGGEEAWKNVESTEVTCPTCSHKRAYFMQLQTRSADEPMTLFYRCAQCAYNWKEG 106
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A7R9ZVT4_9DINO (DNA-directed RNA polymerase subunit n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZVT4_9DINO)

HSP 1 Score: 103 bits (257), Expect = 3.480e-27
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   19 LTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 207
            + +  VDDVLGG +AW +VDQTD  CP C + RAY+R +QTRSADEPMTTFYRCV+C HNWKE
Sbjct:   46 IPRKEVDDVLGGSEAWKDVDQTDAHCPRCTNNRAYFRMMQTRSADEPMTTFYRCVNCAHNWKE 108
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A854QDF7_CRYNV (DNA-directed RNA polymerase subunit n=1 Tax=Cryptococcus neoformans var. grubii Tu259-1 TaxID=1230072 RepID=A0A854QDF7_CRYNV)

HSP 1 Score: 103 bits (258), Expect = 4.210e-27
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   13 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 210
            T L +  VDDVLGG +AW NVD+TDT CP C+H+RAY+RQ+Q RSADEPMTTFY+C  C H W+E 
Sbjct:   63 THLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREN 128
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A813E493_POLGL (DNA-directed RNA polymerase subunit n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E493_POLGL)

HSP 1 Score: 102 bits (255), Expect = 7.020e-27
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   19 LTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 210
            + +  VDDVLGG  AW +VDQ D  CPNC+H RAY++Q+QTRSADEPMT FYRC  C +NWKEG
Sbjct:   46 MPRKEVDDVLGGSDAWKDVDQCDAQCPNCSHSRAYFKQMQTRSADEPMTIFYRCTQCANNWKEG 109
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A812W3S3_9DINO (DNA-directed RNA polymerase subunit n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812W3S3_9DINO)

HSP 1 Score: 102 bits (254), Expect = 9.970e-27
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   16 VLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 207
            V+ +  VDDVLGG +AW +V+Q D  CP C H RAY+RQ+QTRSADEPMTTFYRC  C HNWKE
Sbjct:   45 VVIRKEVDDVLGGSEAWKDVEQCDAHCPKCAHSRAYFRQMQTRSADEPMTTFYRCTQCGHNWKE 108
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A4P9Z162_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z162_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.950e-26
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   13 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVS--CKHNWKE 207
            T+L +  VDDVLGG KAW+NVD T  TCP C H RAYY Q+QTRSADEPMTTFY+C +  C H W+E
Sbjct:   41 TILQRKEVDDVLGGAKAWENVDSTPETCPKCEHSRAYYMQIQTRSADEPMTTFYKCCNHACGHQWRE 107
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BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A139AN53_GONPJ (DNA-directed RNA polymerase subunit n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AN53_GONPJ)

HSP 1 Score: 101 bits (251), Expect = 2.550e-26
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   13 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 207
            T   +  VDDVLGG+KAW+NVDQ D  CP C H RAY+ Q+QTRSADEPMTTFY+CV C   W+E
Sbjct:   40 TSFKRKKVDDVLGGEKAWENVDQADAQCPKCQHHRAYFMQIQTRSADEPMTTFYKCVKCGTQWRE 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1BS50_LEPSM5.870e-2874.14DNA-directed RNA polymerase subunit n=1 Tax=Lepeop... [more]
A0A095C664_CRYGR2.380e-2765.15DNA-directed RNA polymerase subunit n=9 Tax=Crypto... [more]
A0A7S3BLY1_9VIRI2.650e-2763.24DNA-directed RNA polymerase subunit n=1 Tax=Prasin... [more]
UPI001D0253823.200e-2769.49DNA-directed RNA polymerase III subunit RPC10 n=1 ... [more]
A0A7R9ZVT4_9DINO3.480e-2768.25DNA-directed RNA polymerase subunit n=1 Tax=Pyrodi... [more]
A0A854QDF7_CRYNV4.210e-2765.15DNA-directed RNA polymerase subunit n=1 Tax=Crypto... [more]
A0A813E493_POLGL7.020e-2765.63DNA-directed RNA polymerase subunit n=1 Tax=Polare... [more]
A0A812W3S3_9DINO9.970e-2767.19DNA-directed RNA polymerase subunit n=4 Tax=Symbio... [more]
A0A4P9Z162_9FUNG1.950e-2665.67DNA-directed RNA polymerase subunit n=1 Tax=Syncep... [more]
A0A139AN53_GONPJ2.550e-2664.62DNA-directed RNA polymerase subunit n=1 Tax=Gonapo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71195contigM-pyrifera_M_contig71195:481..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog2903.EOD31001
Preferred namePOLR3K
KEGG rclassRC02795
KEGG koko:K02326,ko:K03019
KEGG ReactionR00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04623,ko05166,ko05169,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04623,map05166,map05169
KEGG ModuleM00181,M00263
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005667,GO:0005669,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006383,GO:0006384,GO:0006386,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042779,GO:0042780,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090575,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2906@2759
Ec32 ortholog descriptionZinc finger, TFIIS-type
Ec32 orthologEc-12_008560.1
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.3247447-CDS-M-pyrifera_M_contig71195:480..5681622816606.3247447-CDS-M-pyrifera_M_contig71195:480..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71195 481..568 +
1692278073.6235926-CDS-M-pyrifera_M_contig71195:480..5681692278073.6235926-CDS-M-pyrifera_M_contig71195:480..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71195 481..568 +
1622816606.3373654-CDS-M-pyrifera_M_contig71195:710..8351622816606.3373654-CDS-M-pyrifera_M_contig71195:710..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71195 711..835 +
1692278073.6435215-CDS-M-pyrifera_M_contig71195:710..8351692278073.6435215-CDS-M-pyrifera_M_contig71195:710..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71195 711..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71195.16981.1prot_M-pyrifera_M_contig71195.16981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71195 481..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71195.16981.1

>prot_M-pyrifera_M_contig71195.16981.1 ID=prot_M-pyrifera_M_contig71195.16981.1|Name=mRNA_M-pyrifera_M_contig71195.16981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
HAQSTVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSA
DEPMTTFYRCVSCKHNWKEG*
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mRNA from alignment at M-pyrifera_M_contig71195:481..835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71195.16981.1 ID=mRNA_M-pyrifera_M_contig71195.16981.1|Name=mRNA_M-pyrifera_M_contig71195.16981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=355bp|location=Sequence derived from alignment at M-pyrifera_M_contig71195:481..835+ (Macrocystis pyrifera P11B4 male)
CATGCTCAAAGCACCGTACTGACCAAAGCAGCTGTAGATGATGTTTTGGG
TGGTGACAAGGCGTGGGATAACGTTGATCAAACCGATAGTAAGGTGGCAA
TGGGGGGATGGGGGATGTGGGAGGGCGATGGGAGGTTTCGTGCTGGGTGT
TGTGGGGATTATGGGAGTATTCTGGGGGTATGGTGGTTGGTAGTATGATT
ATGGTGTGTTGTATGGTGTGTTATGTGCAGCTACATGTCCGAATTGTAAC
CACAAGAGAGCGTACTACAGACAAGTACAAACCAGGTCTGCTGATGAGCC
GATGACAACATTCTATCGATGTGTGAGTTGCAAGCACAACTGGAAGGAAG
GATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71195:481..835+

>mRNA_M-pyrifera_M_contig71195.16981.1 ID=mRNA_M-pyrifera_M_contig71195.16981.1|Name=mRNA_M-pyrifera_M_contig71195.16981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig71195:481..835+ (Macrocystis pyrifera P11B4 male)
CATGCTCAAAGCACCGTACTGACCAAAGCAGCTGTAGATGATGTTTTGGG
TGGTGACAAGGCGTGGGATAACGTTGATCAAACCGATACATGCTCAAAGC
ACCGTACTGACCAAAGCAGCTGTAGATGATGTTTTGGGTGGTGACAAGGC
GTGGGATAACGTTGATCAAACCGATACTACATGTCCGAATTGTAACCACA
AGAGAGCGTACTACAGACAAGTACAAACCAGGTCTGCTGATGAGCCGATG
ACAACATTCTATCGATGTGTGAGTTGCAAGCACAACTGGAAGGAAGGATA
GCTACATGTCCGAATTGTAACCACAAGAGAGCGTACTACAGACAAGTACA
AACCAGGTCTGCTGATGAGCCGATGACAACATTCTATCGATGTGTGAGTT
GCAAGCACAACTGGAAGGAAGGATAG
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