mRNA_M-pyrifera_M_contig71178.16977.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71178.16977.1
Unique NamemRNA_M-pyrifera_M_contig71178.16977.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: D7FLF2_ECTSI (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.020e-15
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICREKP++FEVVSLAAGSNVDLLA+Q+A FK
Sbjct:   43 GSIGTQTLDICREKPENFEVVSLAAGSNVDLLAKQIALFK 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A7S0I114_9EUKA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I114_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 9.810e-12
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE PD FEV+SL+AG+NV+LLA+Q+A F+
Sbjct:  212 GSIGTQTLDICREYPDYFEVISLSAGANVELLAKQIAEFE 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A7S2C7Y8_9EUKA (1-deoxy-D-xylulose-5-phosphate reductoisomerase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C7Y8_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.220e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE P+ FEV+SL+AGSNV+LLA QVA F+
Sbjct:   76 GSIGTQTLDICREYPEYFEVISLSAGSNVELLAAQVAEFR 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: B2KJ88_PRYPA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Prymnesium parvum TaxID=97485 RepID=B2KJ88_PRYPA)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE PD FEVVS+AAG+NV+LLA+Q+  F+
Sbjct:   70 GSIGTQTLDICREYPDYFEVVSIAAGANVELLAQQIIEFR 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A7S3F1B6_9EUKA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1B6_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE PD FEVVS++AG+NV+LLA QVA F+
Sbjct:   70 GSIGTQTLDICREYPDYFEVVSISAGANVELLAAQVAEFR 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A7S2C826_9EUKA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C826_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE P+ FEV+SL+AGSNV+LLA QVA F+
Sbjct:   76 GSIGTQTLDICREYPEYFEVISLSAGSNVELLAAQVAEFR 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A6V1P662_HETAK (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P662_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 6.390e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDIC EKP+ FEVV L+AG NV LLA+Q+  FK
Sbjct:   69 GSIGTQTLDICEEKPEHFEVVGLSAGGNVQLLAKQIQQFK 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A7S3I0S5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I0S5_9SPIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-10
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQ+LDI RE P+ FE+ S+AAGSNV+LLA+Q+A FK
Sbjct:   73 GSIGTQSLDIAREYPEYFEIESIAAGSNVELLAKQIAEFK 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A5B8MRM6_9CHLO (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRM6_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTLDICRE P+ FEV +L+AGSNV+LL +Q+  FK
Sbjct:   70 GSIGTQTLDICREHPESFEVKALSAGSNVELLLDQIKEFK 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Match: A0A835ZCZ6_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.040e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK 120
            GSIGTQTL+I  EKP+ FE+V+LAAG N+DLLAEQ+  FK
Sbjct:   42 GSIGTQTLEIVEEKPELFEIVALAAGGNIDLLAEQIVKFK 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71178.16977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF2_ECTSI7.020e-1587.501-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S0I114_9EUKA9.810e-1275.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S2C7Y8_9EUKA1.220e-1177.501-deoxy-D-xylulose-5-phosphate reductoisomerase (F... [more]
B2KJ88_PRYPA1.340e-1175.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S3F1B6_9EUKA1.340e-1177.501-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S2C826_9EUKA1.340e-1177.501-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A6V1P662_HETAK6.390e-1172.501-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S3I0S5_9SPIT1.160e-1070.00Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A5B8MRM6_9CHLO2.230e-1070.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A835ZCZ6_9STRA3.040e-1070.001-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71178contigM-pyrifera_M_contig71178:613..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D7FLF2
Preferred nameDXR
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
EggNOG OGs2QPJ7@2759,COG0020@1
Ec32 ortholog description1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor
Ec32 orthologEc-12_007940.1
EC1.1.1.267
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.1371176-CDS-M-pyrifera_M_contig71178:612..7351622816606.1371176-CDS-M-pyrifera_M_contig71178:612..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71178 613..735 -
1692278073.523489-CDS-M-pyrifera_M_contig71178:612..7351692278073.523489-CDS-M-pyrifera_M_contig71178:612..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71178 613..735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71178.16977.1prot_M-pyrifera_M_contig71178.16977.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71178 613..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71178.16977.1

>prot_M-pyrifera_M_contig71178.16977.1 ID=prot_M-pyrifera_M_contig71178.16977.1|Name=mRNA_M-pyrifera_M_contig71178.16977.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
GSIGTQTLDICREKPDDFEVVSLAAGSNVDLLAEQVAYFK*
back to top

mRNA from alignment at M-pyrifera_M_contig71178:613..735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71178.16977.1 ID=mRNA_M-pyrifera_M_contig71178.16977.1|Name=mRNA_M-pyrifera_M_contig71178.16977.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig71178:613..735- (Macrocystis pyrifera P11B4 male)
GGTTCCATCGGCACACAAACGCTGGACATTTGCCGTGAAAAGCCTGATGA
CTTCGAGGTTGTGTCACTTGCTGCTGGATCCAACGTCGATCTACTGGCGG
AGCAGGTCGCCTACTTCAAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71178:613..735-

>mRNA_M-pyrifera_M_contig71178.16977.1 ID=mRNA_M-pyrifera_M_contig71178.16977.1|Name=mRNA_M-pyrifera_M_contig71178.16977.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig71178:613..735- (Macrocystis pyrifera P11B4 male)
GGTTCCATCGGCACACAAACGCTGGACATTTGCCGTGAAAAGCCTGATGA
CTTCGAGGTTGTGTCACTTGCTGCTGGATCCAACGTCGATCTACTGGCGG
AGCAGGTCGCCTACTTCAAGTGAGGTTCCATCGGCACACAAACGCTGGAC
ATTTGCCGTGAAAAGCCTGATGACTTCGAGGTTGTGTCACTTGCTGCTGG
ATCCAACGTCGATCTACTGGCGGAGCAGGTCGCCTACTTCAAGTGA
back to top