mRNA_M-pyrifera_M_contig7115.16965.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7115.16965.1
Unique NamemRNA_M-pyrifera_M_contig7115.16965.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7115.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7115contigM-pyrifera_M_contig7115:1534..5319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size693
Cds size693
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7115.16965.1prot_M-pyrifera_M_contig7115.16965.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7115 1534..5319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.6040342-CDS-M-pyrifera_M_contig7115:1533..16821622816605.6040342-CDS-M-pyrifera_M_contig7115:1533..1682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 1534..1682 +
1692278073.2158792-CDS-M-pyrifera_M_contig7115:1533..16821692278073.2158792-CDS-M-pyrifera_M_contig7115:1533..1682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 1534..1682 +
1622816605.6184313-CDS-M-pyrifera_M_contig7115:1890..20411622816605.6184313-CDS-M-pyrifera_M_contig7115:1890..2041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 1891..2041 +
1692278073.2261224-CDS-M-pyrifera_M_contig7115:1890..20411692278073.2261224-CDS-M-pyrifera_M_contig7115:1890..2041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 1891..2041 +
1622816605.629965-CDS-M-pyrifera_M_contig7115:2894..29871622816605.629965-CDS-M-pyrifera_M_contig7115:2894..2987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 2895..2987 +
1692278073.2359955-CDS-M-pyrifera_M_contig7115:2894..29871692278073.2359955-CDS-M-pyrifera_M_contig7115:2894..2987Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 2895..2987 +
1622816605.6412263-CDS-M-pyrifera_M_contig7115:3873..40741622816605.6412263-CDS-M-pyrifera_M_contig7115:3873..4074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 3874..4074 +
1692278073.2456152-CDS-M-pyrifera_M_contig7115:3873..40741692278073.2456152-CDS-M-pyrifera_M_contig7115:3873..4074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 3874..4074 +
1622816605.651636-CDS-M-pyrifera_M_contig7115:5220..53191622816605.651636-CDS-M-pyrifera_M_contig7115:5220..5319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 5221..5319 +
1692278073.2551334-CDS-M-pyrifera_M_contig7115:5220..53191692278073.2551334-CDS-M-pyrifera_M_contig7115:5220..5319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7115 5221..5319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7115.16965.1

>prot_M-pyrifera_M_contig7115.16965.1 ID=prot_M-pyrifera_M_contig7115.16965.1|Name=mRNA_M-pyrifera_M_contig7115.16965.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=231bp
FRQLGQGRACELVTEALRNFPQDNDAQIEACGAVANLANNSKENRTRLGN
AGACDLVTKSMATFPDNIDVQHAACVAVGNLANRDAENKKRLGSAGACNK
VCAALAGFQGDLGVQYMGCGAVGNLSNSNTQNCTRLGEAGGCLLVTGGMN
AFPEDRNLQHVGCAAVANLAIGNAPNAARLVKAGARLAVQRALQQFYRDV
EIQTRGTQALQWLSITPRMSNSESMKKLTG*
back to top

mRNA from alignment at M-pyrifera_M_contig7115:1534..5319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7115.16965.1 ID=mRNA_M-pyrifera_M_contig7115.16965.1|Name=mRNA_M-pyrifera_M_contig7115.16965.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3786bp|location=Sequence derived from alignment at M-pyrifera_M_contig7115:1534..5319+ (Macrocystis pyrifera P11B4 male)
TTTCGGCAGCTGGGTCAAGGCCGTGCCTGCGAGCTGGTGACGGAAGCTTT
GAGGAATTTTCCGCAGGATAACGACGCGCAGATAGAGGCTTGCGGCGCCG
TGGCAAACCTTGCCAACAACAGCAAGGAGAATCGGACAAGGCTGGGAAAG
TGAGTGGGGGGGGGGTGGGGGCGTACTCTCGGATCGATTCGTTTTTTTGC
TTTAACGGTGTCGTACTCCATTCTCGTTTGAGTTCCTCAACACTTGAAGT
TTCGAGGCGAGTGAAGAGTTCGACTTTTTTTGGGCCCCTCAGCTGACCCT
CCTGACTCATGACTGACTGACTCATCTTGCTTGCAAAATGTTCCATCTCT
CCGACAGCGCCGGAGCGTGCGACCTCGTGACCAAAAGCATGGCCACTTTT
CCCGACAACATCGACGTGCAACACGCGGCCTGCGTGGCTGTAGGAAACCT
GGCCAATCGGGACGCGGAGAACAAGAAGCGTCTGGGGTCCGCGGGGGCTT
GCAACAAGGTCGGACGGACGGTGTTTCACTTGTTCTCATGCTTGATACGG
GGGACTTACAGTAATCACAACTCACGATGTACCCAAAAATCCCGGAGCAT
CATTCCCCGGGACGCCTTTTCGACCCCGGGACGATATCCCGCGGGACTCA
GCTACCCCGGGACTAAACGGTATTATTCGTACGGGATATGGCCACCGCGG
GACGTGCTTGTGCGGGAACGGGGTTTGCACTTTTCCGCGGTGCGGGAGCG
GGTTATTATAATTTGTGCGGGACGAGTTTGTGCGGGCACACGGGAGTTTG
TATTTATCACGGGACCACGGTATTATCCCGAATCCCTGCCGCGGGATAAA
TCCCGAGGAATGCCCTGCAAAAAACATGTATCTCTCCATATTAACGCGAT
ATATCTGGTTCTGATTACTATGATTAATATGTAACATGAAGAAAAAAAGT
TGTAATTGCAACCAGTACGTACAGCAGTAGTTCCCCTTTGGTTTGCTTTC
CTGTTTGCCCGATGCATGGTGTATCTGTCGTTGTCTACCTGGTATAGATC
TATGCGCTTGGTCGCTTGTTGTTCGTCCAAAAAGAAGAAACAAGAATACT
GGTTTCAGCTTTTCTATTTGTTTCAAACTCTCTTTTTTTTTGCTGTTTTT
GTTTTTGCCGACCATGTGTCTGTTTAGTTGTTTCGTGTTTTTGCTTGTTT
GTCTGGATGTTACTGTGTTTGGGTTGTACTGTTTTTCTATTAATAATTTT
TTAATTTTCTGTTGGTTTGGTTGTTCGTATGTTTGATGGTTTTGTTTGTT
TTTCATTTTTCCTTTATTTGTTTATTTTTTGTTTGGTTTTGTTTCATTTT
TGTTTGCGAAGGTTTGCGCTGCCTTGGCAGGGTTTCAAGGAGACCTAGGC
GTTCAATACATGGGGTGCGGAGCGGTGGGAAACCTTTCCAACAGCAACAC
TCAGGTGAGGGAGATGTCTAGACTGTTGCAACTGGTGCAGCGGGGGGATT
ATCCAGCATAACGAGCTGTAATGCGTTGCAGCGTTTGGTCAAGCGTCAGG
ACATCGGTTCGGTACAACTGTTCGGAGCAGACGGCCGATAGGAAGGGAGC
ACCGACAGTTACACAAGGCCTCGGGAGAACTAAACGAAAAACAATATGTG
TTTTTTTTTGTCGCTGGCCAATGGGATCGCTGACAGTTACACCAGGCCTC
GAGGGAACAAAACAAAAAAACGGAATTAAATCGTTCCCTTCTTCGCTGAT
TCCGGGTTTTGGTTTTACAGATATCATGTGTTCGGATCGTGTCGCTCTAC
AATGAGCTGCGCGTTTGATACACTACCTGTTACTCGACTTTTTCGGAGTT
AAGAATTGCTGGCTCGATGGTTGCACTAAAAACGAGGAAACCTTTGGTAT
ACTGAAATTTTTGTAGGGCACACCCTGCTTCACGTAATATTGTTGCTAAC
CCCCCCCCCCAACCCTCCATCTCGAAAGGGATGCGTGGTCAACGGTCAAG
TGACCAAGGGCAAGCAATAAAAGAGTACGCGGAAAATAGACGAATGTGAC
ATGGAGGAATTTGGTGCACTAGATAGTGGCGAAAAAGAGATCGGTATCCT
AGGAGATAGATGATGTTCACAGGTGGCTACACAGGAAGGGGATAAGACCA
GCAAAACGTTTCTATGTAACAGTATACGAATACAACGTGCTGGGCGCCCG
GATTTTGGAGATGTGTACTAGGCGGAGGAACGGTGCTCCGTCTCGAAAAG
GATGCGTGGTCAATGGTCAAATAGCTATGTTAAGCAACAAAATGAGTACG
CCTCCCTCCTCCCCCCACCCCCCCCTCATTTTCGTTCCAGAACTGCACGA
GGTTAGGCGAAGCGGGGGGCTGCCTGCTCGTAACCGGCGGCATGAACGCC
TTCCCTGAAGATAGAAACCTCCAACACGTTGGCTGTGCGGCAGTGGCGAA
CCTCGCAATCGGAAATGCTCCGAATGCGGCGAGATTGGTGAAGGCGGGGG
CTAGGCTTGCCGTTCAGCGCGCGCTGCAGCAATTCTATAGGGTGAGGGTT
TCTCGAATGGTTGGTAGGTGGTGTTGGTGGTGGTATAGGTGATGTAGGTG
GGGTGGAGGTTGCGGTGTTGGTGGTGTTGGTGGGGGTGCGGACCGGGAAG
AGGCAGGTATTGTTGGTGTTAATAGGGGCAGGGGGGGGGAGGCGTATTCA
TTTGTTGCTTGCCTTAGTCATTTGACCATTGACCACGCATGCCTTTGGAG
ACAGAGCAGGTGGGAAGGAGAGGGGGGGCGAGTGGTGGTGGGGGCGGTTT
GAGTGTTGGTGCCGGTGTTGGCGTCGGTGTTGGATGTCCGGGTTTCGAGG
TTGGTGGTGTTACTGCTGGGGTTGGTGTTGTTACTGCTGGGGTTGGTTTT
GATATGCTGGCGTTGGTTTTGATATGCTGGCGTTGGTTTTGATATGTTGG
TGTTGGTTTTGATATGTTGGCGTTGGTTTTGATATGTTGACGTTGGTTTT
GTTCTGTTGGCGTTGGTTTTGATATGGTGGTGTTGGTATTGATATGCTGG
CGATGGTTTTGATATGTTGGTATTGGTTTTGATATGTTGACGTTGGTTTT
GATATGTTGGCGTTGGTTTTGATATGGTGGTGTTGGTATTGATATGCTGG
CGATGGTTTTGATATGTTGGTATTGGTTTTGATATGTTGGCGTTGGTTTT
GATATGTTGGCGTTGGTTTTGTTATGTTGGCGTTGGTTTTGATATGGTGG
TGTTGGTTTTTGGTTTGTTGGCGTTGGTTTTGATATGGTGGTGTTGGTTT
TTGGTTTGTTGGCGTTGGTTTTGATATGTTGGCGTTGGTTTTGATATGTT
GGAGTTGGTGTTGGTGTTAGTACTGTTGGTGGTGTTGGTGTTGGCGTATA
ATGCCGACGTTTCCGATATAAGTGTATTAATATTGGTGCCGGAAAGATTG
TCGCTGTTTTCGTTTCGGTGCGGTTATTATCGGTAGCTCTCGGCACCCCC
AAAGCGGAGCGGGAGCTACGGCTCACCGCTTTTTTTTCCATGCCCACCAG
CGCATACGGTTGACGGGATGGCCTTGTGTTCAGTCCATGTTCAGTCAATG
TTCCCACGGATATATATACTGTACGAACCCTTCAGTTTGACTCGATATCC
TGGTATTTTTTCCCCTCCCCTCTTTGTTTGTTCTCAGGACGTTGAGATCC
AGACGCGCGGGACTCAAGCTCTGCAGTGGTTGTCAATCACGCCGCGGATG
TCGAACTCCGAGTCGATGAAAAAGCTTACCGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7115:1534..5319+

>mRNA_M-pyrifera_M_contig7115.16965.1 ID=mRNA_M-pyrifera_M_contig7115.16965.1|Name=mRNA_M-pyrifera_M_contig7115.16965.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1386bp|location=Sequence derived from alignment at M-pyrifera_M_contig7115:1534..5319+ (Macrocystis pyrifera P11B4 male)
TTTCGGCAGCTGGGTCAAGGCCGTGCCTGCGAGCTGGTGACGGAAGCTTT
GAGGAATTTTCCGCAGGATAACGACGCGCAGATAGAGGCTTGCGGCGCCG
TGGCAAACCTTGCCAACAACAGCAAGGAGAATCGGACAAGGCTGGGAAAT
TTCGGCAGCTGGGTCAAGGCCGTGCCTGCGAGCTGGTGACGGAAGCTTTG
AGGAATTTTCCGCAGGATAACGACGCGCAGATAGAGGCTTGCGGCGCCGT
GGCAAACCTTGCCAACAACAGCAAGGAGAATCGGACAAGGCTGGGAAACG
CCGGAGCGTGCGACCTCGTGACCAAAAGCATGGCCACTTTTCCCGACAAC
ATCGACGTGCAACACGCGGCCTGCGTGGCTGTAGGAAACCTGGCCAATCG
GGACGCGGAGAACAAGAAGCGTCTGGGGTCCGCGGGGGCTTGCAACAAGC
GCCGGAGCGTGCGACCTCGTGACCAAAAGCATGGCCACTTTTCCCGACAA
CATCGACGTGCAACACGCGGCCTGCGTGGCTGTAGGAAACCTGGCCAATC
GGGACGCGGAGAACAAGAAGCGTCTGGGGTCCGCGGGGGCTTGCAACAAG
GTTTGCGCTGCCTTGGCAGGGTTTCAAGGAGACCTAGGCGTTCAATACAT
GGGGTGCGGAGCGGTGGGAAACCTTTCCAACAGCAACACTCAGGTTTGCG
CTGCCTTGGCAGGGTTTCAAGGAGACCTAGGCGTTCAATACATGGGGTGC
GGAGCGGTGGGAAACCTTTCCAACAGCAACACTCAGAACTGCACGAGGTT
AGGCGAAGCGGGGGGCTGCCTGCTCGTAACCGGCGGCATGAACGCCTTCC
CTGAAGATAGAAACCTCCAACACGTTGGCTGTGCGGCAGTGGCGAACCTC
GCAATCGGAAATGCTCCGAATGCGGCGAGATTGGTGAAGGCGGGGGCTAG
GCTTGCCGTTCAGCGCGCGCTGCAGCAATTCTATAGGAACTGCACGAGGT
TAGGCGAAGCGGGGGGCTGCCTGCTCGTAACCGGCGGCATGAACGCCTTC
CCTGAAGATAGAAACCTCCAACACGTTGGCTGTGCGGCAGTGGCGAACCT
CGCAATCGGAAATGCTCCGAATGCGGCGAGATTGGTGAAGGCGGGGGCTA
GGCTTGCCGTTCAGCGCGCGCTGCAGCAATTCTATAGGGACGTTGAGATC
CAGACGCGCGGGACTCAAGCTCTGCAGTGGTTGTCAATCACGCCGCGGAT
GTCGAACTCCGAGTCGATGAAAAAGCTTACCGGGTGAGACGTTGAGATCC
AGACGCGCGGGACTCAAGCTCTGCAGTGGTTGTCAATCACGCCGCGGATG
TCGAACTCCGAGTCGATGAAAAAGCTTACCGGGTGA
back to top