mRNA_M-pyrifera_M_contig71111.16963.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71111.16963.1
Unique NamemRNA_M-pyrifera_M_contig71111.16963.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: K3WSI6_GLOUD (AMPKBI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSI6_GLOUD)

HSP 1 Score: 119 bits (297), Expect = 3.520e-30
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 LESSGGEVEGS--MAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            L+  GG +E    ++  N ++VP VFRW  GG  V++TGTF + W ++ PMHRSGNDFT++  L RGKH YKFVVD EWRFA DQLT  D   N+NN +D
Sbjct:  151 LDEKGGSLESDNGLSSKNNEVVPMVFRWEHGGRNVYITGTF-NGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDDEWRFAPDQLTVADVEGNVNNFVD 249
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A662Y4I6_9STRA (AMPKBI domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4I6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.120e-30
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   19 EVEGSMAFL--NEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            +VEGS + L   ED+VP VF+W  GG  V++TGTF + W ++ PMHRSGNDFT++  L RGKH+YKFVVD +WRFA DQLT  D   N+NN +D
Sbjct:  108 KVEGSDSALAGGEDVVPMVFKWEHGGRNVYITGTF-NGWSKQCPMHRSGNDFTYIANLTRGKHMYKFVVDDDWRFAPDQLTMADVEGNVNNFVD 200
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A8K1CTG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTG3_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 5.150e-30
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   31 SMAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            +MA    D+VP VFRW  GG  V++TGTF + W ++ PMHRSGNDFT++  L RGKH YKFVVD EWRFA DQLT  D   N+NN +D
Sbjct:  113 TMAATKNDVVPMVFRWEHGGRNVYITGTF-NGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDDEWRFAPDQLTVADVEGNVNNFVD 199
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A836CBZ2_9STRA (AMPKBI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.340e-30
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 LESSGG-EVEGSMAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            L+S+G  +VEG      +++VPTVFRW  GG +V++TGTF +NW ++ PMHRSGNDFT++  L RGKH +KF+VD EWRFA DQ T  D    +NN ID
Sbjct:   55 LDSAGEMDVEGGQQEEEDNVVPTVFRWEHGGRQVYITGTF-NNWEKQIPMHRSGNDFTYIHDLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFID 152
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A2D4CE07_PYTIN (5'-AMP-activated protein kinase subunit beta, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE07_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 6.500e-30
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   46 NEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            N ++VP VFRW  GG  V++TGTF + W ++ PMHRSGNDFT++  L RGKH YKFVVD EWRFA DQLT  D   N+NN +D
Sbjct:    8 NNEVVPMVFRWEHGGRNVYITGTF-NGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDEEWRFAPDQLTVADVEGNVNNFVD 89
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A7S2WI24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI24_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.020e-29
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:   22 VEGSMAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            +E   A  ++DLVPTVFRW  GG +V +TGTF +NW ++ PMHRSGNDFT++  L +GKH YKF+VD EWRFA DQ T  D    INN ID
Sbjct:   47 LEREAAQPHQDLVPTVFRWDHGGRQVFITGTF-NNWEKQIPMHRSGNDFTYIHNLKKGKHAYKFIVDDEWRFAPDQPTVADIEGRINNFID 136
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A5A8E9D1_CAFRO (AMPKBI domain-containing protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9D1_CAFRO)

HSP 1 Score: 118 bits (295), Expect = 1.760e-29
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   40 FLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            F+++D VP VF+W  GG EV+VTGTF + WR+   MHRSG+DFT++ MLPRGKH +KF+VDG+WR+ T+  TETD   N+NN++D
Sbjct:   71 FVDKDRVPAVFKWAHGGSEVYVTGTF-TGWRDHKRMHRSGHDFTYIAMLPRGKHHFKFIVDGQWRWTTNAPTETDADHNVNNVVD 154
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A024GT83_9STRA (AMPKBI domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GT83_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.170e-29
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 LESSGGEVEGSMAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            LES+   V  S     ED+VP VFRW  GG  V +TGTF +NW ++ PMHRSGNDF ++T L RGKH YKFVVD EWR A DQLT  D   N+NN +D
Sbjct:  107 LESTCSSVSTSNFVPEEDVVPMVFRWEHGGRNVCITGTF-NNWSKQMPMHRSGNDFVYITNLSRGKHAYKFVVDDEWRSAPDQLTVADLDGNVNNYVD 203
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A3M6VT51_9STRA (AMPKBI domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT51_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.260e-29
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    7 SSGGEVEGSMAFL--NEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            S G  ++ S A L   ED+VP VF+W  GG  V +TGTF + W ++ PMHRSGNDFT++  L RGKH+YKFVVD +WRFA DQLT  D   N+NN +D
Sbjct:  105 SKGKNIQASDATLPPREDVVPMVFKWEHGGRNVFITGTF-NGWDKQCPMHRSGNDFTYIANLTRGKHMYKFVVDDDWRFAPDQLTMADVEGNVNNYVD 201
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BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Match: A0A1Z5KQT3_FISSO (5'-AMP-activated protein kinase, regulatory beta subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQT3_FISSO)

HSP 1 Score: 114 bits (286), Expect = 3.060e-29
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   40 FLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMHRSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID 294
            +L++D VPTVFRW  GG +V++TGTF +NW  + PMHRSGNDFT++  L RGKH +KF+VD EWRFA DQ T  D    INN ID
Sbjct:   53 WLDDDAVPTVFRWEHGGRQVYITGTF-NNWSRQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFID 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71111.16963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WSI6_GLOUD3.520e-3054.00AMPKBI domain-containing protein n=1 Tax=Globispor... [more]
A0A662Y4I6_9STRA4.120e-3057.45AMPKBI domain-containing protein n=2 Tax=Nothophyt... [more]
A0A8K1CTG3_PYTOL5.150e-3059.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CBZ2_9STRA5.340e-3054.55AMPKBI domain-containing protein n=1 Tax=Tribonema... [more]
A0A2D4CE07_PYTIN6.500e-3060.245'-AMP-activated protein kinase subunit beta, puta... [more]
A0A7S2WI24_9STRA1.020e-2958.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5A8E9D1_CAFRO1.760e-2957.65AMPKBI domain-containing protein n=6 Tax=Cafeteria... [more]
A0A024GT83_9STRA2.170e-2957.14AMPKBI domain-containing protein n=1 Tax=Albugo ca... [more]
A0A3M6VT51_9STRA2.260e-2955.10AMPKBI domain-containing protein n=2 Tax=Peronospo... [more]
A0A1Z5KQT3_FISSO3.060e-2960.005'-AMP-activated protein kinase, regulatory beta s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71111contigM-pyrifera_M_contig71111:1..294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1e-23
Seed eggNOG ortholog65071.PYU1_T007930
Preferred namePRKAB2
KEGG rclassRC00005
KEGG koko:K00703,ko:K07199
KEGG ReactionR02421
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map00500,map01100,map01110,map02026,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
KEGG ModuleM00565
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0030011,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035088,GO:0035090,GO:0035878,GO:0036211,GO:0042304,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060249,GO:0060255,GO:0061245,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070050,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
EggNOG free text desc.5'-AMP-activated protein kinase subunit beta. Source PGD
EggNOG OGs1MFQD@121069,KOG1616@1,KOG1616@2759
EC2.4.1.21
COG Functional cat.G
CAZyGT5
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.5260174-CDS-M-pyrifera_M_contig71111:0..2941622816605.5260174-CDS-M-pyrifera_M_contig71111:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71111 1..294 -
1692278073.1899652-CDS-M-pyrifera_M_contig71111:0..2941692278073.1899652-CDS-M-pyrifera_M_contig71111:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71111 1..294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71111.16963.1prot_M-pyrifera_M_contig71111.16963.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71111 1..294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71111.16963.1

>prot_M-pyrifera_M_contig71111.16963.1 ID=prot_M-pyrifera_M_contig71111.16963.1|Name=mRNA_M-pyrifera_M_contig71111.16963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
LESSGGEVEGSMAFLNEDLVPTVFRWTGGGHEVHVTGTFASNWRERYPMH
RSGNDFTFMTMLPRGKHLYKFVVDGEWRFATDQLTETDEHRNINNIID
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mRNA from alignment at M-pyrifera_M_contig71111:1..294-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71111.16963.1 ID=mRNA_M-pyrifera_M_contig71111.16963.1|Name=mRNA_M-pyrifera_M_contig71111.16963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig71111:1..294- (Macrocystis pyrifera P11B4 male)
TTGGAATCGAGTGGCGGAGAGGTGGAGGGGTCTATGGCGTTTTTGAACGA
GGATCTGGTGCCCACGGTGTTCCGGTGGACTGGAGGGGGGCACGAGGTGC
ATGTGACGGGAACATTCGCGAGCAATTGGCGAGAACGGTACCCAATGCAT
CGTTCTGGCAACGATTTCACCTTTATGACCATGCTCCCGCGAGGCAAGCA
CCTGTACAAGTTCGTGGTGGATGGTGAGTGGCGGTTTGCGACAGACCAGC
TGACTGAAACGGACGAGCACCGCAACATCAACAACATCATCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71111:1..294-

>mRNA_M-pyrifera_M_contig71111.16963.1 ID=mRNA_M-pyrifera_M_contig71111.16963.1|Name=mRNA_M-pyrifera_M_contig71111.16963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig71111:1..294- (Macrocystis pyrifera P11B4 male)
TTGGAATCGAGTGGCGGAGAGGTGGAGGGGTCTATGGCGTTTTTGAACGA
GGATCTGGTGCCCACGGTGTTCCGGTGGACTGGAGGGGGGCACGAGGTGC
ATGTGACGGGAACATTCGCGAGCAATTGGCGAGAACGGTACCCAATGCAT
CGTTCTGGCAACGATTTCACCTTTATGACCATGCTCCCGCGAGGCAAGCA
CCTGTACAAGTTCGTGGTGGATGGTGAGTGGCGGTTTGCGACAGACCAGC
TGACTGAAACGGACGAGCACCGCAACATCAACAACATCATCGACTTGGAA
TCGAGTGGCGGAGAGGTGGAGGGGTCTATGGCGTTTTTGAACGAGGATCT
GGTGCCCACGGTGTTCCGGTGGACTGGAGGGGGGCACGAGGTGCATGTGA
CGGGAACATTCGCGAGCAATTGGCGAGAACGGTACCCAATGCATCGTTCT
GGCAACGATTTCACCTTTATGACCATGCTCCCGCGAGGCAAGCACCTGTA
CAAGTTCGTGGTGGATGGTGAGTGGCGGTTTGCGACAGACCAGCTGACTG
AAACGGACGAGCACCGCAACATCAACAACATCATCGAC
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