mRNA_M-pyrifera_M_contig71044.16956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig71044.16956.1
Unique Name	mRNA_M-pyrifera_M_contig71044.16956.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.110e-35
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTT--KDPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            K +K   KEGY GKAKG++Q LWERGW+ D MST    +D  M++  VL +LPDF NERTALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR+
Sbjct:   28 KNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVRDD-MHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKPKFRRK 128

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5KJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.420e-34
Identity = 67/101 (66.34%), Postives = 77/101 (76.24%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTK-DPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            K +K   KEGY GKAKG++Q LWERGW+ D MST       M++  VL +LPDF NERTALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR+
Sbjct:  224 KNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRK 324

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.880e-34
Identity = 67/101 (66.34%), Postives = 77/101 (76.24%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTK-DPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            K +K   KEGY GKAKG++Q LWERGW+ D MST       M++  VL +LPDF NERTALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR+
Sbjct:  198 KNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRK 298

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.630e-33
Identity = 67/100 (67.00%), Postives = 76/100 (76.00%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTK-DPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRR 309
            K +K   KEGY GKAKG++Q LWERGW+ D MST       M++  VL +LPDF NERTALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR
Sbjct:  393 KNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRR 492

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 9.390e-33
Identity = 67/101 (66.34%), Postives = 77/101 (76.24%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTK-DPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            K +K   KEGY GKAKG++Q LWERGW+ D MST       M++  VL +LPDF NERTALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFRR+
Sbjct:  807 KNAKGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPDFKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRK 907

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5KLA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.320e-31
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 1

Query:   13 KRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTK-DPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            K +K   K+GY GKAKG++Q LWERGW+ D MST       M++  VL +LPDF  ER ALQH VE+RGHIL+ SPK HPEVAGVGIEYSWG SK KFR++
Sbjct:  189 KNAKGKVKKGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVDKVLQALPDFKTERKALQHLVESRGHILLSSPKSHPEVAGVGIEYSWGFSKQKFRQK 289

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.320e-30
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1

Query:   34 KEGYVGKAKGMKQVLWERGWYIDKMSTTT--KDPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            KEGY GKAKG KQ LWERGW+ + M+ +    D K N+  VL +L DF +ERTALQ+ VE+RGHIL+LSPK HPEVAGVGIEYSWG SK +FRR+
Sbjct:  209 KEGYEGKAKGSKQYLWERGWWKEGMNASVGIADEK-NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRK 302

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BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.020e-29
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1

Query:   34 KEGYVGKAKGMKQVLWERGWYIDKMSTTT--KDPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            KEGY GKAKG KQ LWERGW+ + M+ +    D K N+  VL +L DF +ERTALQ+ VE+RGHIL+LSPK HPEVAGVGIEYSWG SK +FRR+
Sbjct:  805 KEGYEGKAKGSKQYLWERGWWKEGMNASVGIADEK-NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRK 898

[Close]

BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.260e-27
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1

Query:   34 KEGYVGKAKGMKQVLWERGWYIDKMSTTT--KDPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            KEG+ GKAKG KQ LWERGW+I+ M+ +    D K N+  VL +L +F +ERT LQ  VE+RGHIL+LSPK HPEVAGVGIEYSWG SK +FRR+
Sbjct:  859 KEGHEGKAKGSKQYLWERGWWIEGMNASVGIADEK-NIEKVLQALTNFESERTELQCLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRK 952

[Close]

BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.030e-26
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 1

Query:   34 KEGYVGKAKGMKQVLWERGWYIDKMSTTT--KDPKMNLGCVLGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLKFRRE 312
            KEGY GKAK  KQ LWERG + + M+ +    D K N+  VL +L DF +ERTALQ+ VE+RGHIL+LSPK HPEVAGVGIEYSWG SK +FRR+
Sbjct:  522 KEGYEGKAKDSKQYLWERGLWKEGMNASVGISDEK-NVEKVLQALTDFESERTALQYLVESRGHILLLSPKCHPEVAGVGIEYSWGFSKQRFRRK 615

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig71044.16956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JCU7_9PHAE	3.110e-35	66.67	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJF8_9PHAE	2.420e-34	66.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVH4_9PHAE	4.880e-34	66.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQB9_9PHAE	6.630e-33	67.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	9.390e-33	66.34	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLA1_9PHAE	2.320e-31	62.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K769_9PHAE	3.320e-30	65.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVN6_9PHAE	3.020e-29	65.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P7_9PHAE	1.260e-27	63.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRV8_9PHAE	1.030e-26	63.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig71044	contig	M-pyrifera_M_contig71044:717..1028 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	68.6
Seed ortholog evalue	2e-09
Seed eggNOG ortholog	159749.K0T4Q0
Hectar predicted targeting category	other localisation
EggNOG OGs	2D06V@1,2SD1E@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	312
Cds size	312
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816605.0950108-CDS-M-pyrifera_M_contig71044:716..1028	1622816605.0950108-CDS-M-pyrifera_M_contig71044:716..1028	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig71044 717..1028 -
1692278072.9189253-CDS-M-pyrifera_M_contig71044:716..1028	1692278072.9189253-CDS-M-pyrifera_M_contig71044:716..1028	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig71044 717..1028 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig71044.16956.1	prot_M-pyrifera_M_contig71044.16956.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig71044 717..1028 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig71044:717..1028-
coding sequence from alignment at M-pyrifera_M_contig71044:717..1028-

protein sequence of mRNA_M-pyrifera_M_contig71044.16956.1

>prot_M-pyrifera_M_contig71044.16956.1 ID=prot_M-pyrifera_M_contig71044.16956.1|Name=mRNA_M-pyrifera_M_contig71044.16956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MGGGKRSKRAQKEGYVGKAKGMKQVLWERGWYIDKMSTTTKDPKMNLGCV
LGSLPDFFNERTALQHTVEARGHILVLSPKFHPEVAGVGIEYSWGMSKLK
FRRE

mRNA from alignment at M-pyrifera_M_contig71044:717..1028-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig71044.16956.1 ID=mRNA_M-pyrifera_M_contig71044.16956.1|Name=mRNA_M-pyrifera_M_contig71044.16956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig71044:717..1028- (Macrocystis pyrifera P11B4 male)
ATGGGGGGGGGGAAGCGTAGCAAGCGCGCGCAGAAGGAAGGCTACGTCGG
GAAAGCCAAGGGGATGAAGCAGGTGCTATGGGAACGCGGGTGGTACATTG
ACAAGATGTCAACCACGACGAAGGATCCCAAAATGAACCTCGGGTGCGTT
CTGGGTAGCCTCCCGGATTTCTTCAACGAGCGCACGGCCCTGCAGCACAC
TGTGGAGGCACGAGGGCACATTCTGGTGCTGTCCCCCAAGTTTCACCCGG
AAGTTGCAGGCGTGGGAATCGAATATTCGTGGGGGATGTCGAAGCTCAAG
TTTCGGCGGGAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71044:717..1028-

>mRNA_M-pyrifera_M_contig71044.16956.1 ID=mRNA_M-pyrifera_M_contig71044.16956.1|Name=mRNA_M-pyrifera_M_contig71044.16956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig71044:717..1028- (Macrocystis pyrifera P11B4 male)
ATGGGGGGGGGGAAGCGTAGCAAGCGCGCGCAGAAGGAAGGCTACGTCGG
GAAAGCCAAGGGGATGAAGCAGGTGCTATGGGAACGCGGGTGGTACATTG
ACAAGATGTCAACCACGACGAAGGATCCCAAAATGAACCTCGGGTGCGTT
CTGGGTAGCCTCCCGGATTTCTTCAACGAGCGCACGGCCCTGCAGCACAC
TGTGGAGGCACGAGGGCACATTCTGGTGCTGTCCCCCAAGTTTCACCCGG
AAGTTGCAGGCGTGGGAATCGAATATTCGTGGGGGATGTCGAAGCTCAAG
TTTCGGCGGGAGATGGGGGGGGGGAAGCGTAGCAAGCGCGCGCAGAAGGA
AGGCTACGTCGGGAAAGCCAAGGGGATGAAGCAGGTGCTATGGGAACGCG
GGTGGTACATTGACAAGATGTCAACCACGACGAAGGATCCCAAAATGAAC
CTCGGGTGCGTTCTGGGTAGCCTCCCGGATTTCTTCAACGAGCGCACGGC
CCTGCAGCACACTGTGGAGGCACGAGGGCACATTCTGGTGCTGTCCCCCA
AGTTTCACCCGGAAGTTGCAGGCGTGGGAATCGAATATTCGTGGGGGATG
TCGAAGCTCAAGTTTCGGCGGGAG