mRNA_M-pyrifera_M_contig71002.16948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71002.16948.1
Unique NamemRNA_M-pyrifera_M_contig71002.16948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A835XLA7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLA7_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 1.130e-17
Identity = 63/158 (39.87%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            +A E   D+A+ L L   D++ST     HFP        +LD +   + +R    A +ADA+NA+K L++R EDARILG M  +R  Y  L+ +N DL+ EH  RA + +AL  AL+ VN  IQ AA+LR+G  +  +V   RAA+KA +   L + I
Sbjct:  549 MAGELVGDLAAYLGLG--DLASTA----HFPGAMRAFKEVLDQVDAHNVTRLRMNADMADASNALKSLIIRAEDARILGAMGPMRKYYRQLADMNRDLIVEHDKRATNHAALLEALREVNQMIQRAARLRVGGPKGRVVALCRAAIKANNMAALFKII 700          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A8HY05_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HY05_CHLRE)

HSP 1 Score: 84.7 bits (208), Expect = 2.140e-17
Identity = 58/158 (36.71%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            +A E   D+A+  +L   ++++T      FP        +L+A+   + +R    A +ADA+NA+K L+++ EDARILGDM+ +R  Y  L+ +N DL+ EH  RA +  AL  +LK VN  IQ AA+LR+G  +  +V+  RAA+K  +   L + I
Sbjct:   24 MAGELVGDLAA--YLGATELAATA----DFPLAMKAFKEVLNAVDEHNITRLRMNADMADASNAVKQLIIKAEDARILGDMKAMRKYYRQLADMNRDLIAEHDKRATNHVALLESLKEVNQMIQRAARLRVGAAKSRVVSLCRAAIKNNNMAALFKII 175          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A2V0P0U7_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0U7_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.630e-16
Identity = 68/166 (40.96%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLL--------DAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            LA +   D+A+  HL   D++S    R +FP  A  L   L         A+   + +R   AA  ADA+  +K LVVR EDAR+LGDM  +R +Y  L  LN DL+ EH  RA + + L  AL+AVN  IQ AA+LR+GP    +V A RAAVK      LA+ +
Sbjct:  600 LAGDLLQDLAA--HLGADDLAS----RANFPAAAEALRATLAQARRGGGGAVEELNATRAGLAADAADASALLKALVVRAEDARLLGDMGGMRRAYRQLYDLNRDLIAEHEKRATNHARLLDALRAVNRAIQRAARLRVGPPAARVVAACRAAVKQGAVGALARIL 759          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A2K3DMF6_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DMF6_CHLRE)

HSP 1 Score: 84.7 bits (208), Expect = 6.210e-16
Identity = 58/158 (36.71%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            +A E   D+A+  +L   ++++T      FP        +L+A+   + +R    A +ADA+NA+K L+++ EDARILGDM+ +R  Y  L+ +N DL+ EH  RA +  AL  +LK VN  IQ AA+LR+G  +  +V+  RAA+K  +   L + I
Sbjct:  550 MAGELVGDLAA--YLGATELAATA----DFPLAMKAFKEVLNAVDEHNITRLRMNADMADASNAVKQLIIKAEDARILGDMKAMRKYYRQLADMNRDLIAEHDKRATNHVALLESLKEVNQMIQRAARLRVGAAKSRVVSLCRAAIKNNNMAALFKII 701          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A7S2BZT5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BZT5_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 1.130e-15
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQD 483
            LA E    + +AL +  L+  +       FP +      +L  +   + +R    A +AD +N  K LV+R EDARIL D++ +RA+YA L  LN +L+ E+  RA +   L  ALK VN  IQ AA+LR+G  +  +VTA RAA+KA +
Sbjct:  114 LAGEVLQALCAALQVVELESHA------EFPQEMEAFRTVLLHVDEYNAARLKMTAEMADQSNTAKTLVIRAEDARILSDIKAMRAAYAELYTLNSELMGEYAKRANNHEQLLAALKDVNHMIQKAARLRVGSAKARIVTACRAAIKANN 257          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A5B8MTC8_9CHLO (Bardet-Biedl syndrome 2 protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTC8_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.560e-15
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   28 LALAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTILQ 513
            ++LA E   D AS L +  L+  +       FP +      +L  +   +  R   +A +AD   AIK LV++GE+ARIL +M  VR +Y  L  LN D++ EH  +A +  AL  +LK VN  IQ A+ LR+G  + +LVT+ RAA+KA + + L + I Q
Sbjct:  542 MSLAGEVVQDFASFLGISELESVND------FPKEMEEFQGVLQDVESYNAVRLTISADVADRTGAIKELVIKGEEARILQNMSAVRENYRQLFHLNKDMVAEHEKKALNHKALVDSLKKVNNMIQKASNLRVGKAKSALVTSCRAAIKANNMRTLFKLIKQ 697          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A7S0L2Q7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2Q7_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.130e-15
Identity = 56/150 (37.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:   34 LAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQD 483
            LA E   D+ S+L +  L+  +       FP +      +L  +   + +R    A +AD++N  K LV++ EDAR+LGDM+ +RA+Y  L +LN +L+ E+  RA +   L  ALK VN  IQ AA+LR+G  +  +VTA R A+KA +
Sbjct:  555 LAGEVLQDLCSSLGITELESVA------EFPLEMEKFREVLLKVDEYNAARLRLTAEMADSSNQAKTLVIKAEDARLLGDMKSMRAAYGQLYSLNAELIGEYNKRANNHEHLLAALKDVNHMIQKAARLRVGSAKTRVVTACRGAIKANN 698          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A7R9QLH9_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QLH9_9ACAR)

HSP 1 Score: 82.8 bits (203), Expect = 2.720e-15
Identity = 57/158 (36.08%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   43 EFFADIASALHLDTL---DVSSTTLLRFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            E   D+  +L  + L   D+SST      FP +   L + ++++      R   AA IAD + AI+ LVVR EDAR++G+++ ++  Y  L+ALN DL+TE++ R Q+ S L  +LK VN  IQ A  LR+G  +  L+T+ R A++  +   L++ I
Sbjct:  391 ELAGDLIQSLIFEYLGIEDLSSTA----SFPSEVERLKKFINSVEELQAVRQRLAAEIADNSIAIRELVVRAEDARLIGEIKLMKELYNDLNALNNDLITEYKIRCQNHSDLVESLKQVNVIIQRAGNLRVGKPKSQLITSCRNAIQQNNLNLLSRII 544          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A7S1G4Y1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4Y1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.900e-15
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  112 RFHFPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            R  FP + +    +L  +   +  R    A +AD++N +K LV++ EDARILGDM+ ++  Y+ L  LN +L+ E+  R+ +   L  ALK VN  IQ AA+LR+G  +  +V+A RAA+KA +   L Q I
Sbjct:  580 RAEFPAEMTAFQEVLMRVDEYNAIRLKLTAEMADSSNMVKTLVIKAEDARILGDMKLMKRMYSELYTLNNELIGEYTKRSHNHQELLNALKEVNGMIQKAARLRVGTAKARVVSACRAAIKANNIHSLFQII 711          
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Match: A0A7S3DK90_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DK90_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 3.930e-15
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  121 FPHDASLLPRLLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYAHLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLVTAARAAVKAQDWKGLAQTI 507
            FP +      +L  +   + +R    A +AD++N +K LV++ EDARILGDM+ +R  Y+ L  +N +L+ +H  RA + + L  ALK VN  IQ AA+LR+G  + S+V++ RAA+K+ + + L + I
Sbjct:  563 FPKEMEEFKNVLMRVDEFNTTRLKLTAEMADSSNMVKALVIKAEDARILGDMDHMRKMYSELHNVNRELVGDHMKRANNHNELLAALKEVNQMIQKAARLRVGEAKTSVVSSCRAAIKSNNIQALFKII 691          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71002.16948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835XLA7_9CHLO1.130e-1739.87Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A8HY05_CHLRE2.140e-1736.71Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2V0P0U7_9CHLO4.630e-1640.96Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2K3DMF6_CHLRE6.210e-1636.71Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]
A0A7S2BZT5_9EUKA1.130e-1538.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A5B8MTC8_9CHLO1.560e-1537.04Bardet-Biedl syndrome 2 protein n=1 Tax=Chloropico... [more]
A0A7S0L2Q7_9EUKA2.130e-1537.33Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7R9QLH9_9ACAR2.720e-1536.08Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A7S1G4Y1_9STRA2.900e-1538.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3DK90_9EUKA3.930e-1537.98Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71002contigM-pyrifera_M_contig71002:556..1077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LMB8
Preferred nameBBS2
KEGG koko:K16747
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001085,GO:0001103,GO:0001501,GO:0001578,GO:0001894,GO:0001895,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003018,GO:0003352,GO:0003356,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005902,GO:0005929,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006936,GO:0006939,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007601,GO:0007610,GO:0008015,GO:0008104,GO:0008134,GO:0008150,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010605,GO:0010629,GO:0014820,GO:0014824,GO:0014829,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0019221,GO:0019222,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0030534,GO:0030900,GO:0031090,GO:0031253,GO:0031514,GO:0031667,GO:0032095,GO:0032096,GO:0032098,GO:0032099,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032400,GO:0032401,GO:0032402,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033059,GO:0033210,GO:0033365,GO:0034097,GO:0034464,GO:0034613,GO:0035082,GO:0035150,GO:0035296,GO:0036064,GO:0038108,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040015,GO:0040018,GO:0042221,GO:0042310,GO:0042311,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043473,GO:0044085,GO:0044320,GO:0044321,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0045926,GO:0045927,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048640,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050880,GO:0050896,GO:0050953,GO:0051093,GO:0051094,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051875,GO:0051877,GO:0051904,GO:0051905,GO:0060170,GO:0060249,GO:0060255,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070121,GO:0070491,GO:0070727,GO:0070887,GO:0070925,GO:0071310,GO:0071345,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090150,GO:0097458,GO:0097722,GO:0097746,GO:0097755,GO:0097756,GO:0098588,GO:0098590,GO:0098858,GO:0098862,GO:0098876,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1903441,GO:1905515,GO:1990778,GO:2000145
EggNOG free text desc.negative regulation of appetite by leptin-mediated signaling pathway
EggNOG OGs2C0K6@1,2QPWU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size522
Cds size522
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.7357273-CDS-M-pyrifera_M_contig71002:555..10771622816604.7357273-CDS-M-pyrifera_M_contig71002:555..1077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71002 556..1077 -
1692278072.6873827-CDS-M-pyrifera_M_contig71002:555..10771692278072.6873827-CDS-M-pyrifera_M_contig71002:555..1077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71002 556..1077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71002.16948.1prot_M-pyrifera_M_contig71002.16948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71002 556..1077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71002.16948.1

>prot_M-pyrifera_M_contig71002.16948.1 ID=prot_M-pyrifera_M_contig71002.16948.1|Name=mRNA_M-pyrifera_M_contig71002.16948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MVLRVCAPRLALAAEFFADIASALHLDTLDVSSTTLLRFHFPHDASLLPR
LLDAISVADKSRGVTAARIADAANAIKLLVVRGEDARILGDMERVRASYA
HLSALNGDLLTEHRSRAQHLSALKRALKAVNAYIQAAAKLRLGPQRKSLV
TAARAAVKAQDWKGLAQTILQQK*
back to top

mRNA from alignment at M-pyrifera_M_contig71002:556..1077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71002.16948.1 ID=mRNA_M-pyrifera_M_contig71002.16948.1|Name=mRNA_M-pyrifera_M_contig71002.16948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig71002:556..1077- (Macrocystis pyrifera P11B4 male)
ATGGTGCTTCGTGTGTGCGCCCCTCGATTGGCGTTGGCTGCGGAATTTTT CGCCGACATTGCTTCCGCACTGCACCTTGACACGCTGGACGTGTCATCCA CGACCCTGCTTCGGTTCCATTTCCCCCACGACGCGTCCTTGTTGCCTCGA TTGCTTGACGCCATTTCTGTAGCCGACAAATCCCGGGGAGTGACGGCTGC AAGAATCGCAGATGCGGCGAACGCAATCAAGCTGCTCGTGGTTCGAGGCG AAGACGCCAGGATTCTGGGGGACATGGAACGCGTCAGAGCCTCGTACGCC CACCTCTCTGCCCTCAACGGCGACCTCCTCACAGAACACCGATCGCGCGC ACAACACCTCTCAGCCCTCAAACGAGCCCTCAAAGCCGTCAATGCATACA TCCAAGCAGCAGCAAAACTAAGACTCGGACCACAGAGAAAATCCCTCGTC ACCGCAGCAAGGGCTGCCGTCAAGGCGCAGGACTGGAAAGGGCTGGCCCA AACCATCCTCCAGCAGAAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71002:556..1077-

>mRNA_M-pyrifera_M_contig71002.16948.1 ID=mRNA_M-pyrifera_M_contig71002.16948.1|Name=mRNA_M-pyrifera_M_contig71002.16948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig71002:556..1077- (Macrocystis pyrifera P11B4 male)
ATGGTGCTTCGTGTGTGCGCCCCTCGATTGGCGTTGGCTGCGGAATTTTT
CGCCGACATTGCTTCCGCACTGCACCTTGACACGCTGGACGTGTCATCCA
CGACCCTGCTTCGGTTCCATTTCCCCCACGACGCGTCCTTGTTGCCTCGA
TTGCTTGACGCCATTTCTGTAGCCGACAAATCCCGGGGAGTGACGGCTGC
AAGAATCGCAGATGCGGCGAACGCAATCAAGCTGCTCGTGGTTCGAGGCG
AAGACGCCAGGATTCTGGGGGACATGGAACGCGTCAGAGCCTCGTACGCC
CACCTCTCTGCCCTCAACGGCGACCTCCTCACAGAACACCGATCGCGCGC
ACAACACCTCTCAGCCCTCAAACGAGCCCTCAAAGCCGTCAATGCATACA
TCCAAGCAGCAGCAAAACTAAGACTCGGACCACAGAGAAAATCCCTCGTC
ACCGCAGCAAGGGCTGCCGTCAAGGCGCAGGACTGGAAAGGGCTGGCCCA
AACCATCCTCCAGCAGAAGTGAATGGTGCTTCGTGTGTGCGCCCCTCGAT
TGGCGTTGGCTGCGGAATTTTTCGCCGACATTGCTTCCGCACTGCACCTT
GACACGCTGGACGTGTCATCCACGACCCTGCTTCGGTTCCATTTCCCCCA
CGACGCGTCCTTGTTGCCTCGATTGCTTGACGCCATTTCTGTAGCCGACA
AATCCCGGGGAGTGACGGCTGCAAGAATCGCAGATGCGGCGAACGCAATC
AAGCTGCTCGTGGTTCGAGGCGAAGACGCCAGGATTCTGGGGGACATGGA
ACGCGTCAGAGCCTCGTACGCCCACCTCTCTGCCCTCAACGGCGACCTCC
TCACAGAACACCGATCGCGCGCACAACACCTCTCAGCCCTCAAACGAGCC
CTCAAAGCCGTCAATGCATACATCCAAGCAGCAGCAAAACTAAGACTCGG
ACCACAGAGAAAATCCCTCGTCACCGCAGCAAGGGCTGCCGTCAAGGCGC
AGGACTGGAAAGGGCTGGCCCAAACCATCCTCCAGCAGAAGTGA
back to top