mRNA_M-pyrifera_M_contig70995.16941.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70995.16941.1
Unique NamemRNA_M-pyrifera_M_contig70995.16941.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70995.16941.1 vs. uniprot
Match: A0A2V5WUH1_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5WUH1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-6
Identity = 49/186 (26.34%), Postives = 81/186 (43.55%), Query Frame = 1 
Query:   31 VLGVGSVQAQSLC--------ALPVLQKATLDQ-DCPASPVPLQVFALKNESEPMQVLLKADGTGLVDANVKIT---GSPSHVA----VSLHRVGFFHTHATTRYAGSETGWFAEPLLPLAFSED-------------FPVLGGASQALWITFVVGDEAVSGNYSGVVSVSLNGEEVGSLEYQLAI 501
            +L V S+   S C        A PV   A + + D   S     + A +NE EP Q++++ADG GL   +++++   G   H+     V+L+R  +      +  +    GW+ + L+P     D             F V   A+Q +W+   V  +A  G YSG V+V+   +E   L  +L I
Sbjct:    5 ILSVASLMVLSCCTPAQAALSAFPVDGLARVRRHDAVFSNTTASIKAARNEYEPFQIVVRADGEGLKRVSMEVSDLRGEDGHIIDRRHVTLYREQYVEVTRPSPKSKEGAGWYPDALIPFVNPPDGRPLKNARFAGAPFEVEPKANQPVWVDVFVPKDAAPGTYSGTVTVTAQHQEAVRLPVRLTI 190
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70995.16941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V5WUH1_9BACT1.420e-626.34Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70995contigM-pyrifera_M_contig70995:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.2284422-CDS-M-pyrifera_M_contig70995:2..5031622816604.2284422-CDS-M-pyrifera_M_contig70995:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70995 3..503 -
1692278072.3226464-CDS-M-pyrifera_M_contig70995:2..5031692278072.3226464-CDS-M-pyrifera_M_contig70995:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70995 3..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70995.16941.1prot_M-pyrifera_M_contig70995.16941.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70995 3..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70995.16941.1

>prot_M-pyrifera_M_contig70995.16941.1 ID=prot_M-pyrifera_M_contig70995.16941.1|Name=mRNA_M-pyrifera_M_contig70995.16941.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MWFVVLSLLGVLGVGSVQAQSLCALPVLQKATLDQDCPASPVPLQVFALK
NESEPMQVLLKADGTGLVDANVKITGSPSHVAVSLHRVGFFHTHATTRYA
GSETGWFAEPLLPLAFSEDFPVLGGASQALWITFVVGDEAVSGNYSGVVS
VSLNGEEVGSLEYQLAI
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mRNA from alignment at M-pyrifera_M_contig70995:3..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70995.16941.1 ID=mRNA_M-pyrifera_M_contig70995.16941.1|Name=mRNA_M-pyrifera_M_contig70995.16941.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig70995:3..503- (Macrocystis pyrifera P11B4 male)
ATGTGGTTTGTGGTATTAAGTTTGTTGGGAGTGCTGGGAGTGGGAAGTGT
GCAGGCACAATCGCTCTGTGCTTTGCCAGTGCTCCAAAAGGCAACTTTGG
ATCAGGATTGTCCAGCATCACCGGTTCCACTTCAAGTTTTTGCACTCAAG
AATGAGAGTGAACCAATGCAGGTGCTCCTGAAGGCTGATGGGACGGGATT
GGTGGATGCGAATGTCAAGATCACGGGATCTCCGAGCCATGTTGCCGTTT
CATTGCATCGTGTTGGATTCTTTCATACGCACGCAACAACGAGATATGCA
GGGAGTGAGACTGGGTGGTTTGCAGAGCCTTTACTACCCCTGGCGTTTTC
CGAAGACTTTCCCGTGCTTGGTGGAGCGAGTCAGGCATTGTGGATCACAT
TTGTGGTGGGTGATGAAGCAGTATCTGGGAATTACAGTGGTGTGGTGAGT
GTGAGTTTGAATGGAGAGGAGGTAGGGTCGCTGGAGTATCAATTGGCGAT
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70995:3..503-

>mRNA_M-pyrifera_M_contig70995.16941.1 ID=mRNA_M-pyrifera_M_contig70995.16941.1|Name=mRNA_M-pyrifera_M_contig70995.16941.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig70995:3..503- (Macrocystis pyrifera P11B4 male)
ATGTGGTTTGTGGTATTAAGTTTGTTGGGAGTGCTGGGAGTGGGAAGTGT
GCAGGCACAATCGCTCTGTGCTTTGCCAGTGCTCCAAAAGGCAACTTTGG
ATCAGGATTGTCCAGCATCACCGGTTCCACTTCAAGTTTTTGCACTCAAG
AATGAGAGTGAACCAATGCAGGTGCTCCTGAAGGCTGATGGGACGGGATT
GGTGGATGCGAATGTCAAGATCACGGGATCTCCGAGCCATGTTGCCGTTT
CATTGCATCGTGTTGGATTCTTTCATACGCACGCAACAACGAGATATGCA
GGGAGTGAGACTGGGTGGTTTGCAGAGCCTTTACTACCCCTGGCGTTTTC
CGAAGACTTTCCCGTGCTTGGTGGAGCGAGTCAGGCATTGTGGATCACAT
TTGTGGTGGGTGATGAAGCAGTATCTGGGAATTACAGTGGTGTGGTGAGT
GTGAGTTTGAATGGAGAGGAGGTAGGGTCGCTGGAGTATCAATTGGCGAT
TATGTGGTTTGTGGTATTAAGTTTGTTGGGAGTGCTGGGAGTGGGAAGTG
TGCAGGCACAATCGCTCTGTGCTTTGCCAGTGCTCCAAAAGGCAACTTTG
GATCAGGATTGTCCAGCATCACCGGTTCCACTTCAAGTTTTTGCACTCAA
GAATGAGAGTGAACCAATGCAGGTGCTCCTGAAGGCTGATGGGACGGGAT
TGGTGGATGCGAATGTCAAGATCACGGGATCTCCGAGCCATGTTGCCGTT
TCATTGCATCGTGTTGGATTCTTTCATACGCACGCAACAACGAGATATGC
AGGGAGTGAGACTGGGTGGTTTGCAGAGCCTTTACTACCCCTGGCGTTTT
CCGAAGACTTTCCCGTGCTTGGTGGAGCGAGTCAGGCATTGTGGATCACA
TTTGTGGTGGGTGATGAAGCAGTATCTGGGAATTACAGTGGTGTGGTGAG
TGTGAGTTTGAATGGAGAGGAGGTAGGGTCGCTGGAGTATCAATTGGCGA
TT
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