mRNA_M-pyrifera_M_contig70955.16935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70955.16935.1
Unique NamemRNA_M-pyrifera_M_contig70955.16935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70955.16935.1 vs. uniprot
Match: A0A7S2NJW5_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2NJW5_9DINO)

HSP 1 Score: 134 bits (337), Expect = 2.700e-35
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    4 TSPKYRVINALYFIFRMLDNGLLLLIFILTILN-GSLTIPKDPQIALLAGIGTELFYDVLLLTSKFWFLDRLSIYIGCMLYIMYSLLK-------LIWIFLAIRFGAFVFEEMVDIALDCEVHNDL 357
            TSPKYR++NAL+  FR+ DN +LL + +LT++N G +TIP   QIA+ + IG ELFYDVLLLTSKFWFL+RLS YIG  LY+MY ++         IW+ L +RF AF  EE VD+A+D E+HNDL
Sbjct:  160 TSPKYRLLNALFLSFRLTDNLMLLTVAVLTVMNKGHITIPDKSQIAVYSAIGVELFYDVLLLTSKFWFLERLSPYIGIGLYVMYCVIVWVIGSPGYIWVVLGVRFAAFAIEESVDVAIDIEMHNDL 285
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BLAST of mRNA_M-pyrifera_M_contig70955.16935.1 vs. uniprot
Match: A0A7S4W0U3_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W0U3_9DINO)

HSP 1 Score: 130 bits (327), Expect = 6.880e-34
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:    4 TSPKYRVINALYFIFRMLDNGLLLLIFILTILNGS-LTIPKDPQIALLAGIGTELFYDVLLLTSKFWFLDRLSIYIGCMLYIMYSLLKLI-------WIFLAIRFGAFVFEEMVDIALDCEVHNDL 357
            TSPKYR++NAL+  FR+ DN +LL + +LT+++G  +T+P   Q+A+ + IG ELFYD+LLLTSKFWFL+RLS YIG  LY MY  +  +       W+ L IRF AF+ EE VDIA+D E+HNDL
Sbjct:  165 TSPKYRLLNALFLSFRLTDNLMLLTVAVLTVMHGGQITVPDKSQVAVYSAIGVELFYDILLLTSKFWFLERLSPYIGVGLYAMYVTIVAVIGSPFYMWVVLGIRFAAFIIEESVDIAIDIEMHNDL 290
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BLAST of mRNA_M-pyrifera_M_contig70955.16935.1 vs. uniprot
Match: X6MLQ1_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MLQ1_RETFI)

HSP 1 Score: 91.7 bits (226), Expect = 3.520e-20
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:    1 LTSPKYRVINALYFIFRMLDNGLLLLIFILTILNGSLTIPKDPQIALLAGIGTELFYDVLLLTSKFWFLDRLSIYIGCMLYIMYSLLK-------LIWIFLAIRFGAFVFEEMVDIALDCEVHNDL 357
            LT+PKYR+I  +Y +F++ DN   L + I +I + S+T      I + A +G E+FYDV+  T+K WFL R+SI IG +LY++Y++L        ++W    +R  +++ E + D ALD E+HNDL
Sbjct:   27 LTTPKYRLIQLVYILFKLTDNISFLALVIASISSYSITKQDKNYIFVFAVVGVEVFYDVMNFTTKVWFLHRVSILIGAILYVVYAILFHRLGIPWILWTVYFVRLISYILECLTDFALDYEIHNDL 152
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BLAST of mRNA_M-pyrifera_M_contig70955.16935.1 vs. uniprot
Match: X6LA31_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LA31_RETFI)

HSP 1 Score: 76.3 bits (186), Expect = 2.260e-15
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 LTSPKYRVINALYFIFRMLDNGLLLLIFILTILNGSLTIPKDPQIALLAGIGTELFYDVLLLTSKFWFLDRLSIYIGCMLYIMYSLLKL 267
            LT+PKYR+I  +Y +F++ DN   L++ I +I + S+T      IA+   +G E+FYDV+  T+K WFL R+SI IG +LY++Y++L L
Sbjct:   34 LTTPKYRLIQLVYILFKLADNISFLVLVIASISSYSVTKQDSNYIAVFTVVGVEIFYDVMNFTTKVWFLHRVSILIGAILYVVYAILFL 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70955.16935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2NJW5_9DINO2.700e-3556.35Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S4W0U3_9DINO6.880e-3453.97Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
X6MLQ1_RETFI3.520e-2039.68Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
X6LA31_RETFI2.260e-1543.82Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70955contigM-pyrifera_M_contig70955:79..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.9184635-CDS-M-pyrifera_M_contig70955:78..3391622816603.9184635-CDS-M-pyrifera_M_contig70955:78..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70955 79..339 +
1692278072.2003956-CDS-M-pyrifera_M_contig70955:78..3391692278072.2003956-CDS-M-pyrifera_M_contig70955:78..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70955 79..339 +
1622816603.9331546-CDS-M-pyrifera_M_contig70955:429..5251622816603.9331546-CDS-M-pyrifera_M_contig70955:429..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70955 430..525 +
1692278072.2096932-CDS-M-pyrifera_M_contig70955:429..5251692278072.2096932-CDS-M-pyrifera_M_contig70955:429..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70955 430..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70955.16935.1prot_M-pyrifera_M_contig70955.16935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70955 79..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70955.16935.1

>prot_M-pyrifera_M_contig70955.16935.1 ID=prot_M-pyrifera_M_contig70955.16935.1|Name=mRNA_M-pyrifera_M_contig70955.16935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
LTSPKYRVINALYFIFRMLDNGLLLLIFILTILNGSLTIPKDPQIALLAG
IGTELFYDVLLLTSKFWFLDRLSIYIGCMLYIMYSLLKLIWIFLAIRFGA
FVFEEMVDIALDCEVHNDL
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mRNA from alignment at M-pyrifera_M_contig70955:79..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70955.16935.1 ID=mRNA_M-pyrifera_M_contig70955.16935.1|Name=mRNA_M-pyrifera_M_contig70955.16935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig70955:79..525+ (Macrocystis pyrifera P11B4 male)
CTCACAAGCCCAAAGTACCGCGTGATCAACGCACTCTACTTTATCTTCCG
AATGCTGGACAACGGGCTGTTGCTACTCATCTTCATCTTAACTATTCTGA
ACGGCAGCCTTACTATTCCAAAGGACCCACAAATAGCACTCTTGGCGGGA
ATAGGCACCGAGCTTTTCTATGACGTACTCCTTCTCACCAGCAAGTTCTG
GTTCCTGGATCGGCTCAGCATTTACATTGGGTGTATGCTTTACATCATGT
ACTCGCTGCTTGTAACTTACAAGTATCATTTCAGCAACGATGAATCGGAC
ATGACGGTATCTGATCATGATCACCCGGGGGATAAAGTCATTGTCAACGA
GAAACTTATCTGGATATTCTTGGCAATCCGGTTTGGCGCTTTCGTGTTTG
AGGAAATGGTGGATATTGCGCTTGATTGCGAAGTGCACAATGATCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70955:79..525+

>mRNA_M-pyrifera_M_contig70955.16935.1 ID=mRNA_M-pyrifera_M_contig70955.16935.1|Name=mRNA_M-pyrifera_M_contig70955.16935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig70955:79..525+ (Macrocystis pyrifera P11B4 male)
CTCACAAGCCCAAAGTACCGCGTGATCAACGCACTCTACTTTATCTTCCG
AATGCTGGACAACGGGCTGTTGCTACTCATCTTCATCTTAACTATTCTGA
ACGGCAGCCTTACTATTCCAAAGGACCCACAAATAGCACTCTTGGCGGGA
ATAGGCACCGAGCTTTTCTATGACGTACTCCTTCTCACCAGCAAGTTCTG
GTTCCTGGATCGGCTCAGCATTTACATTGGGTGTATGCTTTACATCATGT
ACTCGCTGCTTCTCACAAGCCCAAAGTACCGCGTGATCAACGCACTCTAC
TTTATCTTCCGAATGCTGGACAACGGGCTGTTGCTACTCATCTTCATCTT
AACTATTCTGAACGGCAGCCTTACTATTCCAAAGGACCCACAAATAGCAC
TCTTGGCGGGAATAGGCACCGAGCTTTTCTATGACGTACTCCTTCTCACC
AGCAAGTTCTGGTTCCTGGATCGGCTCAGCATTTACATTGGGTGTATGCT
TTACATCATGTACTCGCTGCTTAAACTTATCTGGATATTCTTGGCAATCC
GGTTTGGCGCTTTCGTGTTTGAGGAAATGGTGGATATTGCGCTTGATTGC
GAAGTGCACAATGATCTTAAACTTATCTGGATATTCTTGGCAATCCGGTT
TGGCGCTTTCGTGTTTGAGGAAATGGTGGATATTGCGCTTGATTGCGAAG
TGCACAATGATCTT
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