mRNA_M-pyrifera_M_contig70949.16932.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70949.16932.1
Unique NamemRNA_M-pyrifera_M_contig70949.16932.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A813K0L4_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K0L4_POLGL)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-8
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            L+++AV+++SAQ  A R  +E+ P +V+ TLF GE  D+   R+     ++  +   K  GN L+  G WS A   Y +A  L  Y     P  RK  +GI D  + LV
Sbjct:   16 LLQDAVKLKSAQMGAKRKTYETWPYFVQHTLFHGEKEDLNAWRQLPFDEKIVISERIKDEGNELYAKGQWSDAVDKYEEAPTLIYYCYSKDPGWRKNNRGIDDDVLVLV 124
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812SK15_9DINO (FKBP70 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SK15_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE  D +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct:   13 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEDFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAVEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 121
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812N9S4_SYMPI (FKBP70 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812N9S4_SYMPI)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE  D +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct:   13 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEDFKAWRQLPFDEKKVISERLKEEGNELFKKGSWMDAVEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 121
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812HSU2_9DINO (FKBP70 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812HSU2_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE  D +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct:   13 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEDFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAIEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 121
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812RIS5_9DINO (FKBP70 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RIS5_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE  D +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct:   13 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEDFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAIEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 121
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812VNI5_9DINO (PPID protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812VNI5_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-6
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE  D +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct:  912 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEDFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAIEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 1020
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A7S4QBW9_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QBW9_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 4.080e-6
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   10 IEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRKKG-ISDSTVRLV 321
            ++ + ++ SAQ +A   +F S P +V+ TL+  +  D E  R   +G R+  A   K  GN L+  G    A   YA+AAGLF YV+ +  +    G I D+ +RLV
Sbjct:   60 LKRSAQLMSAQSKAKSKLFHSWPSFVQETLWHADTADFESWRSLPIGERLEIADRLKHEGNELYRAGKHEDAVDKYARAAGLFHYVQQTGNNPGGHGSIDDAYLRLV 166
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A7S1AJS7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AJS7_NOCSC)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-5
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGE--DVEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            +++EAV+++SAQ    R  +E+ P +V+ TLF GE  + +  R+     R+  A   K  GN LF   ++  A + Y +A  +F Y        RK  KGI D  + LV
Sbjct:   39 ILQEAVKLKSAQIGQKRKTYETWPYFVQHTLFHGEKDEFKAWRKLPFDERMEVAERLKAEGNDLFKQNNFMDAINKYEEAPSVFYYCYSKDAGWRKNNKGIDDDELVLV 147
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BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A1Q9D785_SYMMI (Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D785_SYMMI)

HSP 1 Score: 52.0 bits (123), Expect = 2.120e-5
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGED--VEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE    +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct: 1366 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEYFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAIEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 1474
[Close]
BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Match: A0A812WY88_9DINO (PPID protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WY88_9DINO)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-5
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    7 LIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGED--VEECRRKGLGARVAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRK--KGISDSTVRLV 321
            ++++AV+++SAQ    R  +E+ P +V+ TLF GE    +  R+     +   +   K  GN LF  G W  A   Y +AA L  Y   +  + RK  +GI D  ++LV
Sbjct: 1162 ILQQAVKLKSAQMNEKRKTYETRPFFVQHTLFHGEKEYFKAWRQLPFDEKKVISERLKEEGNDLFKKGSWMDAIEKYEEAASLVHYYWSTDANWRKNNRGIDDDVLKLV 1270
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70949.16932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A813K0L4_POLGL1.440e-834.86Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A812SK15_9DINO1.630e-633.03FKBP70 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812N9S4_SYMPI1.630e-633.03FKBP70 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
A0A812HSU2_9DINO1.820e-633.03FKBP70 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A812RIS5_9DINO2.230e-633.03FKBP70 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A812VNI5_9DINO2.380e-633.03PPID protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S4QBW9_9DINO4.080e-634.58Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A7S1AJS7_NOCSC1.960e-533.03Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A1Q9D785_SYMMI2.120e-532.11Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Symb... [more]
A0A812WY88_9DINO2.130e-532.11PPID protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70949contigM-pyrifera_M_contig70949:725..1048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog157072.XP_008869649.1
KEGG koko:K01802
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-05_001980.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.7366114-CDS-M-pyrifera_M_contig70949:724..10481622816603.7366114-CDS-M-pyrifera_M_contig70949:724..1048Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70949 725..1048 +
1692278072.0836244-CDS-M-pyrifera_M_contig70949:724..10481692278072.0836244-CDS-M-pyrifera_M_contig70949:724..1048Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70949 725..1048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70949.16932.1prot_M-pyrifera_M_contig70949.16932.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70949 725..1048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70949.16932.1

>prot_M-pyrifera_M_contig70949.16932.1 ID=prot_M-pyrifera_M_contig70949.16932.1|Name=mRNA_M-pyrifera_M_contig70949.16932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MELIEEAVRVRSAQDRAARPMFESLPEYVRGTLFPGEDVEECRRKGLGAR
VAKAVEWKGAGNTLFGDGDWSGAASLYAKAAGLFVYVEPSVPDIRKKGIS
DSTVRLVQ
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mRNA from alignment at M-pyrifera_M_contig70949:725..1048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70949.16932.1 ID=mRNA_M-pyrifera_M_contig70949.16932.1|Name=mRNA_M-pyrifera_M_contig70949.16932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig70949:725..1048+ (Macrocystis pyrifera P11B4 male)
ATGGAACTGATCGAGGAAGCAGTTCGAGTACGTAGTGCACAAGATCGTGC
AGCGCGTCCCATGTTTGAAAGCTTGCCAGAGTACGTGCGAGGGACGTTGT
TTCCTGGCGAGGACGTGGAGGAGTGTCGTAGGAAAGGTTTGGGGGCGCGG
GTGGCGAAAGCTGTGGAGTGGAAGGGTGCGGGGAACACCTTGTTTGGGGA
CGGTGACTGGAGCGGTGCGGCAAGCCTGTACGCGAAAGCTGCTGGGCTGT
TTGTGTACGTGGAGCCTTCTGTGCCCGACATTCGGAAGAAAGGCATCAGC
GACAGCACGGTGCGGCTGGTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70949:725..1048+

>mRNA_M-pyrifera_M_contig70949.16932.1 ID=mRNA_M-pyrifera_M_contig70949.16932.1|Name=mRNA_M-pyrifera_M_contig70949.16932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig70949:725..1048+ (Macrocystis pyrifera P11B4 male)
ATGGAACTGATCGAGGAAGCAGTTCGAGTACGTAGTGCACAAGATCGTGC
AGCGCGTCCCATGTTTGAAAGCTTGCCAGAGTACGTGCGAGGGACGTTGT
TTCCTGGCGAGGACGTGGAGGAGTGTCGTAGGAAAGGTTTGGGGGCGCGG
GTGGCGAAAGCTGTGGAGTGGAAGGGTGCGGGGAACACCTTGTTTGGGGA
CGGTGACTGGAGCGGTGCGGCAAGCCTGTACGCGAAAGCTGCTGGGCTGT
TTGTGTACGTGGAGCCTTCTGTGCCCGACATTCGGAAGAAAGGCATCAGC
GACAGCACGGTGCGGCTGGTGCAGATGGAACTGATCGAGGAAGCAGTTCG
AGTACGTAGTGCACAAGATCGTGCAGCGCGTCCCATGTTTGAAAGCTTGC
CAGAGTACGTGCGAGGGACGTTGTTTCCTGGCGAGGACGTGGAGGAGTGT
CGTAGGAAAGGTTTGGGGGCGCGGGTGGCGAAAGCTGTGGAGTGGAAGGG
TGCGGGGAACACCTTGTTTGGGGACGGTGACTGGAGCGGTGCGGCAAGCC
TGTACGCGAAAGCTGCTGGGCTGTTTGTGTACGTGGAGCCTTCTGTGCCC
GACATTCGGAAGAAAGGCATCAGCGACAGCACGGTGCGGCTGGTGCAG
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