mRNA_M-pyrifera_M_contig70917.16928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70917.16928.1
Unique NamemRNA_M-pyrifera_M_contig70917.16928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC)

HSP 1 Score: 134 bits (337), Expect = 4.350e-35
Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:    1 VLGAPLARALRSAREDAKSAA--VELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRP-VPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTRKI 570
            +L AP      +   DA S+   +++ FR   E ++V+P+   R+ +++ +   ++ D+AIARI  QE  E +R V  +P V F      +PP ELRG P + +   HVG+LSF++ K H+D D K  +A   +   R YL YHIKA+K+Y+H RMRKRV  LL VLNRA+P    +K  KKT++GKTF RK+
Sbjct:  118 LLSAPFDHCFLALHADASSSLSPIQIPFRR-QETIYVLPQ-ADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSF----GKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDRKV 304
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV)

HSP 1 Score: 134 bits (337), Expect = 4.350e-35
Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:    1 VLGAPLARALRSAREDAKSAA--VELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRP-VPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTRKI 570
            +L AP      +   DA S+   +++ FR   E ++V+P+   R+ +++ +   ++ D+AIARI  QE  E +R V  +P V F      +PP ELRG P + +   HVG+LSF++ K H+D D K  +A   +   R YL YHIKA+K+Y+H RMRKRV  LL VLNRA+P    +K  KKT++GKTF RK+
Sbjct:  118 LLSAPFDHCFLALHADASSSLSPIQIPFRR-QETIYVLPQ-ADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSF----GKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDRKV 304
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A8K1FEV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEV5_PYTOL)

HSP 1 Score: 130 bits (326), Expect = 1.820e-33
Identity = 77/191 (40.31%), Postives = 122/191 (63.87%), Query Frame = 1 
Query:    1 VLGAPLARALRSAREDAKSA--AVELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRPVPKGPGH-VGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTR 564
            ++ AP  +   + +  + S   AV++ FR  +E ++V+P+   R+ +++ +   ++ D+AIAR+  QE V+ +R V  +P V F+     +PP ELRG P  +     VG+LS ++   HVD D+K  +A + +  LR YL YHIKA+K++LH RMRKRV  LL VLNRA+P+   +K+AKKT+SG+TF+R
Sbjct:  118 IISAPFEQCFEALKGGSASGLGAVQIPFRR-NETMYVLPQ-ADRIVIVYSVCFEDKTDQAIARVFLQEFVDTRRTVNNAPPVAFS----KDPPLELRGAPGLRNSADLVGYLSLAIFPTHVDTDEKRAKAASLVQGLRNYLHYHIKASKTHLHIRMRKRVDLLLQVLNRARPEKDPSKQAKKTISGRTFSR 302
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A7S0XD73_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XD73_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.290e-33
Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = 1 
Query:   85 PHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRPVPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTRK 567
            P+E ++V P P  ++ VI+ +D  +  D+++ARI  QE VE QR +  +P V+F+     EPP EL        P   GFLSF LE+RH+  DKK + A+  LT  R+YL YHIK +K+YLH RMRK+VA  L VLNRA+P+    +  KKTM GKTF RK
Sbjct:  146 PNETIFVCPAPA-KIVVIFLVDFNDITDKSLARIFLQEFVEAQRSIRTAPPVNFS----REPPLELANLRFTYNPDATGFLSFGLEERHITGDKK-QTAITLLTGFRSYLYYHIKCSKTYLHMRMRKKVAGWLQVLNRARPE---IETEKKTMGGKTFVRK 297
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.170e-33
Identity = 82/197 (41.62%), Postives = 117/197 (59.39%), Query Frame = 1 
Query:    1 VLGAPLAR---ALRSAREDAKSAAVELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRG----RPVPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTRKI 570
            +LGAPL     AL + +    S  +++ FR   E ++++P+   R+ +++ +   ++ D+AIAR+  QE  E +R V  +P V F      +PP ELR     RP      HVG+LSF++ K H+D D K  +A   L   R YL YHIKA+K+YLH RMRKRV  LL VLNRA+P     K +KKT++GKTF RK+
Sbjct:  118 ILGAPLDHCFLALHAGQAKVLSP-IQIPFRR-QETIYILPQ-DDRIVIVFSVAFQDKTDQAIARVFLQEFAEARRHVNNAPPVSF----GKDPPLELRAVSGLRPCAD---HVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRAQPPKDPTKTSKKTITGKTFDRKV 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP)

HSP 1 Score: 126 bits (316), Expect = 5.490e-32
Identity = 76/191 (39.79%), Postives = 117/191 (61.26%), Query Frame = 1 
Query:    1 VLGAPLARALRSAREDAKSAA--VELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRP-VPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTR 564
            +LGAP  +   + +    S+   V++ +R  +E ++V+P+   R+ +++ +   ++ D+AIAR+  QE V+ +R V  +P V F      +PP ELRG P +   P  VG+LS ++   HVD  +K  +A   +  LR YL YHIKA+K+YLH RMRKRV  LL VLNRA+P+   +K  KKT++G+TF R
Sbjct:  118 ILGAPFEQCFEALQNGNASSLGPVQIPYRR-NETIYVLPQ-ADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAF----GKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQSKTQKKTITGRTFAR 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: K3WLT3_GLOUD (Arp2/3 complex 34 kDa subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLT3_GLOUD)

HSP 1 Score: 125 bits (313), Expect = 1.520e-31
Identity = 77/191 (40.31%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:    1 VLGAPLARALRSAREDAKS--AAVELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRPVPKGPGH-VGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTR 564
            +L AP  +   +      S  A V++ FR   E ++V+P+   R+ +++ +   ++ D+AIAR+  QE V+ +R V G+P   F+     +PP ELRG P  +     VG+LS ++   HVD   K  +A + +  LR YL YHIKA+K+YLH RMRKRV  LL VLNRAKP+   +K +KKT++G+TF R
Sbjct:  118 ILAAPFEQCFEALANGTSSSLAPVQIPFRRS-ETMYVLPQ-ADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNGAPPAAFS----KDPPLELRGAPGLRNSSDLVGYLSLAIFPTHVDTPAKRVKAASLIQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRAKPEKDPSKASKKTITGRTFER 302
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BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A484E080_BRELC (Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E080_BRELC)

HSP 1 Score: 124 bits (312), Expect = 2.140e-31
Identity = 73/169 (43.20%), Postives = 108/169 (63.91%), Query Frame = 1 
Query:   61 AVELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRP-VPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTR 564
            AV++ FR  +E ++V+P+   R+ +++ +   ++ D+AIAR+  QE V+ +R V  +P V F      +PP ELRG P + + P  VG+LS ++   HVD  +K  +A   +  LR YL YHIKA+K+YLH RMRKRV  LL VLNRA+P+    K  KKT++G+TF R
Sbjct:  140 AVQIPFRR-NETVYVLPQ-ADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAF----GRDPPLELRGAPGLCQSPDLVGYLSLAIFPTHVDTAEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQTKTQKKTITGRTFAR 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A5A8CNA0_CAFRO (Arp2/3 complex 34 kDa subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNA0_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 2.910e-31
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 1 
Query:   85 PHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRPVPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKP 507
            P E +WV+PR   R+TV+W L+     D A+ R++  E+ E  R+V  +PS  F D  A  PP E R   V  GP  VGF+S +L K HV+   KL QAV  L +LRA+L YHIKAAK+ LHTRMR RV   L VL RA P
Sbjct:  174 PSEHIWVVPR-SDRLTVVWSLEFPNAFDAALGRVIASELAEAGRKVPAAPSAIFYDIDA--PPAETRDTAVTLGPNAVGFVSITLLKSHVETPAKLSQAVDKLVLLRAFLLYHIKAAKAALHTRMRARVDSWLQVLRRASP 311
[Close]
BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Match: A0A0W8DBT4_PHYNI (Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBT4_PHYNI)

HSP 1 Score: 124 bits (310), Expect = 3.640e-31
Identity = 71/168 (42.26%), Postives = 107/168 (63.69%), Query Frame = 1 
Query:   64 VELSFRAPHEALWVIPRPGQRVTVIWCLDLAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRP-VPKGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLHTRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTR 564
            V++ +R  +E ++V+P+   R+ +++ +   ++ D+AIAR+  QE V+ +R V  +P V F      +PP ELRG P +   P  VG+LS ++   HVD  +K  +A   +  LR YL YHIKA+K+YLH RMRKRV  LL VLNRA+P+   +K  KKT++G+TF R
Sbjct:  134 VQIPYRR-NETIYVLPQ-ADRIVIVYSVCFEDKTDQAIARVFLQEFVDTRRTVNNAPPVAF----GKDPPLELRGAPGLRHSPDLVGYLSLAIFPTHVDTTEKRVKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQSKTQKKTITGRTFAR 295
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70917.16928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CQD1_SAPPC4.350e-3541.45Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniac... [more]
T0RSJ4_SAPDV4.350e-3541.45Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia ... [more]
A0A8K1FEV5_PYTOL1.820e-3340.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0XD73_9STRA2.290e-3347.20Arp2/3 complex 34 kDa subunit n=1 Tax=Chromulina n... [more]
A0A024U441_9STRA5.170e-3341.62Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces ... [more]
G4Z955_PHYSP5.490e-3239.79Arp2/3 complex 34 kDa subunit n=30 Tax=Peronospora... [more]
K3WLT3_GLOUD1.520e-3140.31Arp2/3 complex 34 kDa subunit n=1 Tax=Globisporang... [more]
A0A484E080_BRELC2.140e-3143.20Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactu... [more]
A0A5A8CNA0_CAFRO2.910e-3148.94Arp2/3 complex 34 kDa subunit n=2 Tax=Cafeteria ro... [more]
A0A0W8DBT4_PHYNI3.640e-3142.26Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70917contigM-pyrifera_M_contig70917:590..1162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue8.5e-30
Seed eggNOG ortholog112098.XP_008613270.1
Preferred nameARPC2
KEGG koko:K05758
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0000226,GO:0000302,GO:0000902,GO:0000904,GO:0001667,GO:0001726,GO:0002009,GO:0002102,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005102,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006909,GO:0006928,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009636,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009986,GO:0009987,GO:0010026,GO:0010033,GO:0010035,GO:0010090,GO:0010243,GO:0010591,GO:0010592,GO:0010631,GO:0010638,GO:0010720,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0012505,GO:0012506,GO:0014070,GO:0014910,GO:0014911,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019894,GO:0019899,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030042,GO:0030054,GO:0030055,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030175,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030834,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031253,GO:0031256,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031941,GO:0031982,GO:0032271,GO:0032273,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032587,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032991,GO:0033043,GO:0033157,GO:0033267,GO:0033554,GO:0034021,GO:0034314,GO:0034599,GO:0034614,GO:0034622,GO:0035254,GO:0035556,GO:0035650,GO:0035690,GO:0036119,GO:0036120,GO:0036194,GO:0036195,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042542,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043254,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044306,GO:0044309,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045202,GO:0045335,GO:0045472,GO:0045595,GO:0045597,GO:0045785,GO:0046677,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051049,GO:0051050,GO:0051094,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051258,GO:0051261,GO:0051270,GO:0051272,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060284,GO:0060341,GO:0060429,GO:0060491,GO:0061024,GO:0061645,GO:0061825,GO:0061826,GO:0061827,GO:0061830,GO:0061834,GO:0061835,GO:0065003,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070301,GO:0070358,GO:0070528,GO:0070848,GO:0070849,GO:0070887,GO:0071236,GO:0071310,GO:0071362,GO:0071363,GO:0071364,GO:0071407,GO:0071417,GO:0071437,GO:0071495,GO:0071801,GO:0071803,GO:0071840,GO:0071933,GO:0071944,GO:0072752,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090313,GO:0090314,GO:0090316,GO:0090558,GO:0090626,GO:0090723,GO:0090725,GO:0097223,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:0097435,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098793,GO:0098794,GO:0098805,GO:0098858,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1900024,GO:1900026,GO:1901355,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1902115,GO:1902117,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1905924,GO:1905926,GO:1990089,GO:1990090,GO:2000145,GO:2000147,GO:2000249,GO:2000251,GO:2000812,GO:2000814
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsCOG4690@1,KOG2826@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons1
Model size573
Cds size573
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.4407198-CDS-M-pyrifera_M_contig70917:589..11621622816603.4407198-CDS-M-pyrifera_M_contig70917:589..1162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70917 590..1162 -
1692278071.9450216-CDS-M-pyrifera_M_contig70917:589..11621692278071.9450216-CDS-M-pyrifera_M_contig70917:589..1162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70917 590..1162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70917.16928.1prot_M-pyrifera_M_contig70917.16928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70917 590..1162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70917.16928.1

>prot_M-pyrifera_M_contig70917.16928.1 ID=prot_M-pyrifera_M_contig70917.16928.1|Name=mRNA_M-pyrifera_M_contig70917.16928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
VLGAPLARALRSAREDAKSAAVELSFRAPHEALWVIPRPGQRVTVIWCLD
LAERMDRAIARIVCQEMVENQRRVTGSPSVHFTDSSASEPPQELRGRPVP
KGPGHVGFLSFSLEKRHVDDDKKLRQAVATLTMLRAYLTYHIKAAKSYLH
TRMRKRVAELLLVLNRAKPDDPLAKKAKKTMSGKTFTRKI*
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mRNA from alignment at M-pyrifera_M_contig70917:590..1162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70917.16928.1 ID=mRNA_M-pyrifera_M_contig70917.16928.1|Name=mRNA_M-pyrifera_M_contig70917.16928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig70917:590..1162- (Macrocystis pyrifera P11B4 male)
GTGCTTGGGGCGCCTCTGGCACGTGCGCTGCGCAGTGCGCGGGAGGACGC
CAAGAGTGCGGCGGTGGAGCTGTCGTTCCGCGCGCCACATGAGGCGCTGT
GGGTGATTCCTCGGCCAGGACAGCGCGTGACGGTGATTTGGTGCCTCGAT
TTGGCAGAACGCATGGACCGAGCGATTGCTCGCATCGTGTGCCAGGAAAT
GGTGGAGAACCAACGCCGCGTCACCGGCTCTCCATCCGTACACTTTACAG
ACTCGTCAGCCTCAGAACCGCCACAAGAGCTCAGAGGCAGACCAGTGCCC
AAGGGGCCAGGACACGTGGGCTTCCTCTCCTTCTCGCTCGAAAAGAGACA
CGTCGACGACGACAAGAAGCTCCGCCAAGCCGTAGCCACGCTCACCATGC
TCCGCGCCTACCTCACCTACCACATCAAGGCTGCAAAATCCTACCTCCAC
ACCAGGATGCGGAAACGCGTCGCAGAGCTCCTCCTCGTCCTCAACAGGGC
AAAGCCAGACGACCCGCTCGCCAAGAAGGCGAAGAAAACAATGTCCGGGA
AAACATTCACCAGGAAAATATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70917:590..1162-

>mRNA_M-pyrifera_M_contig70917.16928.1 ID=mRNA_M-pyrifera_M_contig70917.16928.1|Name=mRNA_M-pyrifera_M_contig70917.16928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig70917:590..1162- (Macrocystis pyrifera P11B4 male)
GTGCTTGGGGCGCCTCTGGCACGTGCGCTGCGCAGTGCGCGGGAGGACGC
CAAGAGTGCGGCGGTGGAGCTGTCGTTCCGCGCGCCACATGAGGCGCTGT
GGGTGATTCCTCGGCCAGGACAGCGCGTGACGGTGATTTGGTGCCTCGAT
TTGGCAGAACGCATGGACCGAGCGATTGCTCGCATCGTGTGCCAGGAAAT
GGTGGAGAACCAACGCCGCGTCACCGGCTCTCCATCCGTACACTTTACAG
ACTCGTCAGCCTCAGAACCGCCACAAGAGCTCAGAGGCAGACCAGTGCCC
AAGGGGCCAGGACACGTGGGCTTCCTCTCCTTCTCGCTCGAAAAGAGACA
CGTCGACGACGACAAGAAGCTCCGCCAAGCCGTAGCCACGCTCACCATGC
TCCGCGCCTACCTCACCTACCACATCAAGGCTGCAAAATCCTACCTCCAC
ACCAGGATGCGGAAACGCGTCGCAGAGCTCCTCCTCGTCCTCAACAGGGC
AAAGCCAGACGACCCGCTCGCCAAGAAGGCGAAGAAAACAATGTCCGGGA
AAACATTCACCAGGAAAATATGAGTGCTTGGGGCGCCTCTGGCACGTGCG
CTGCGCAGTGCGCGGGAGGACGCCAAGAGTGCGGCGGTGGAGCTGTCGTT
CCGCGCGCCACATGAGGCGCTGTGGGTGATTCCTCGGCCAGGACAGCGCG
TGACGGTGATTTGGTGCCTCGATTTGGCAGAACGCATGGACCGAGCGATT
GCTCGCATCGTGTGCCAGGAAATGGTGGAGAACCAACGCCGCGTCACCGG
CTCTCCATCCGTACACTTTACAGACTCGTCAGCCTCAGAACCGCCACAAG
AGCTCAGAGGCAGACCAGTGCCCAAGGGGCCAGGACACGTGGGCTTCCTC
TCCTTCTCGCTCGAAAAGAGACACGTCGACGACGACAAGAAGCTCCGCCA
AGCCGTAGCCACGCTCACCATGCTCCGCGCCTACCTCACCTACCACATCA
AGGCTGCAAAATCCTACCTCCACACCAGGATGCGGAAACGCGTCGCAGAG
CTCCTCCTCGTCCTCAACAGGGCAAAGCCAGACGACCCGCTCGCCAAGAA
GGCGAAGAAAACAATGTCCGGGAAAACATTCACCAGGAAAATATGA
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