mRNA_M-pyrifera_M_contig70890.16920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70890.16920.1
Unique NamemRNA_M-pyrifera_M_contig70890.16920.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70890.16920.1 vs. uniprot
Match: D8LI59_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI59_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-15
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 GMATSQDGMAWQKRGPVFDGGPEGAFDEAGAGRRRVVMLNG 123
            GMATSQDG+AW+K+GPVFDGGPEG+FDE GAGRRR+VM  G
Sbjct:  314 GMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKG 354
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BLAST of mRNA_M-pyrifera_M_contig70890.16920.1 vs. uniprot
Match: A0A7S4UAL4_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UAL4_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 5.220e-6
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 GMATSQDGMAWQKRGPVFDGGPEGAFDEAGAGRRRVVMLNG 123
            G+A S+DG++WQ+RG +   GPEGA+D  G  RR V  L G
Sbjct:  272 GLAVSEDGVSWQRRGLLLGPGPEGAWDAGGCSRRHVFRLGG 312
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70890.16920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI59_ECTSI1.160e-1580.49Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S4UAL4_9DINO5.220e-651.22Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70890contigM-pyrifera_M_contig70890:316..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D8LI59
Preferred nameSMYD5
KEGG koko:K01369,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04142,ko04612,map04142,map04612
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008757,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0034968,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
EC3.4.22.34
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02000,ko03029
Exons1
Model size126
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.8162658-CDS-M-pyrifera_M_contig70890:315..4381622816602.8162658-CDS-M-pyrifera_M_contig70890:315..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70890 316..438 -
1692278071.5956361-CDS-M-pyrifera_M_contig70890:315..4381692278071.5956361-CDS-M-pyrifera_M_contig70890:315..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70890 316..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.826936-UTR-M-pyrifera_M_contig70890:438..4411622816602.826936-UTR-M-pyrifera_M_contig70890:438..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70890 439..441 -
1692278071.6074374-UTR-M-pyrifera_M_contig70890:438..4411692278071.6074374-UTR-M-pyrifera_M_contig70890:438..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70890 439..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70890.16920.1prot_M-pyrifera_M_contig70890.16920.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70890 316..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70890.16920.1

>prot_M-pyrifera_M_contig70890.16920.1 ID=prot_M-pyrifera_M_contig70890.16920.1|Name=mRNA_M-pyrifera_M_contig70890.16920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
MATSQDGMAWQKRGPVFDGGPEGAFDEAGAGRRRVVMLNG*
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mRNA from alignment at M-pyrifera_M_contig70890:316..441-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70890.16920.1 ID=mRNA_M-pyrifera_M_contig70890.16920.1|Name=mRNA_M-pyrifera_M_contig70890.16920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig70890:316..441- (Macrocystis pyrifera P11B4 male)
GGCATGGCCACGTCTCAGGACGGAATGGCTTGGCAAAAGAGGGGCCCAGT
CTTCGACGGGGGTCCGGAAGGCGCGTTCGACGAGGCGGGGGCCGGGCGGC
GGAGGGTGGTGATGCTCAACGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70890:316..441-

>mRNA_M-pyrifera_M_contig70890.16920.1 ID=mRNA_M-pyrifera_M_contig70890.16920.1|Name=mRNA_M-pyrifera_M_contig70890.16920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig70890:316..441- (Macrocystis pyrifera P11B4 male)
ATGGCCACGTCTCAGGACGGAATGGCTTGGCAAAAGAGGGGCCCAGTCTT
CGACGGGGGTCCGGAAGGCGCGTTCGACGAGGCGGGGGCCGGGCGGCGGA
GGGTGGTGATGCTCAACGGGTGAATGGCCACGTCTCAGGACGGAATGGCT
TGGCAAAAGAGGGGCCCAGTCTTCGACGGGGGTCCGGAAGGCGCGTTCGA
CGAGGCGGGGGCCGGGCGGCGGAGGGTGGTGATGCTCAACGGGTGA
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