mRNA_M-pyrifera_M_contig708.16899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig708.16899.1
Unique NamemRNA_M-pyrifera_M_contig708.16899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: D8LHK0_ECTSI (6-pyruvoyltetrahydropterin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK0_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.070e-66
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1
Query:   10 RMLVMILVSLVA-MASAHHPTMGGGSGHKGYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCKA 360
            R+L M+ V L+A + SAH+PT GGG GHKGYSLGIRDSIMIAHSFEGPQFGPAQ+MHGATYTVDAEFKTDALVEKSNWVVDIGAASEML+ VLSKYNFKNLNE+FPG+NTTTEFMCK 
Sbjct:    3 RLLAMVWVCLMAVLTSAHNPTAGGGGGHKGYSLGIRDSIMIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFPGQNTTTEFMCKV 120          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A7S4DL62_HETAK (6-pyruvoyltetrahydropterin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL62_HETAK)

HSP 1 Score: 154 bits (389), Expect = 7.070e-46
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 1
Query:   88 HKGYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCKA 360
            H  +SLG+RDSIMIAHSF+G +FGPAQQMHGATYTVD EF+ + LV+K NWVVDIG ASE+LS+VL KYNFKNLNELFP +NTTTEFMCKA
Sbjct:   26 HAKFSLGVRDSIMIAHSFKGEEFGPAQQMHGATYTVDVEFEAEELVDKCNWVVDIGEASEILSNVLRKYNFKNLNELFPDDNTTTEFMCKA 116          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A7S2V5M2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5M2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.240e-43
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1
Query:   25 ILVSLVAMASAHHPTMGGGSGHKGYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCKA 360
            IL  +  +A AH          KGY+LG++DSIMIAHSF+G +FGPAQ++HGATYTVD EF  D L  K NWV+DIG ASE+L  VL+KYNFKNL+ELFP +NTTTEFMCK 
Sbjct:   15 ILCIMFTLAYAHK---------KGYTLGVKDSIMIAHSFQGEEFGPAQKLHGATYTVDVEFMADVLESKCNWVIDIGLASEILGKVLAKYNFKNLDELFPDDNTTTEFMCKV 117          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: L1J9Q7_GUITC (6-pyruvoyltetrahydropterin synthase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J9Q7_GUITC)

HSP 1 Score: 140 bits (354), Expect = 4.820e-40
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   73 GGGSGHKGYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCK 357
            GGG   + YSLG+RDSIMIAHSF G +FGPAQ MHGATYTVD EF  ++L  + NWV+DIG    ML  VL +YNFKNLNELFPGENTTTEFMCK
Sbjct:   58 GGG---ERYSLGLRDSIMIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFPGENTTTEFMCK 149          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A836CJP8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.220e-39
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1
Query:   97 YSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCK 357
            Y+LGIRDSIMIAHSF+G +FGPAQQMHGATYT D EF    L    NWV+DIG AS MLS VL++YNFKNLNE+FP ENTTTEFMC+
Sbjct:   10 YTLGIRDSIMIAHSFKGAEFGPAQQMHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCR 96          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: W7T312_9STRA (6-pyruvoyltetrahydropterin synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T312_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.590e-39
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1
Query:   97 YSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFP-GENTTTEFMCKA 360
            +SLGIRDSIMIAHSF+G QFGPAQ +HGATYTVD  F++  LV K+NWV+DIG AS  LS +LSKYNFKNL+++FP GENTTTEFMC+A
Sbjct:   33 FSLGIRDSIMIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRA 121          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A7S0BJC5_9RHOD (6-pyruvoyltetrahydropterin synthase (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BJC5_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 1.370e-37
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   94 GYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNEL--FPGENTTTEFMCKA 360
            GYSLG+RDSIMIAHSF+G +FGPAQ +HGATYTVD EF +  LV  SNWVVDIG A ++LSDVL  YN+KNL++L  F G+NTTTEFMCK 
Sbjct:   13 GYSLGVRDSIMIAHSFKGAEFGPAQGVHGATYTVDCEFSSINLVPGSNWVVDIGKALQVLSDVLKVYNYKNLDDLEEFKGQNTTTEFMCKV 103          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A7S0WCE1_9CRYP (6-pyruvoyltetrahydropterin synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WCE1_9CRYP)

HSP 1 Score: 131 bits (329), Expect = 2.770e-36
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   79 GSGHKGYSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPGENTTTEFMCK 357
            G   +GY+LG+RDSIMIAHSF+GP+FGPAQ MHGATYTVD E   + L +K NWVVDIG    +L +VL  YN+KNL+E+FPG NTTTEFM +
Sbjct:   59 GGQQEGYTLGVRDSIMIAHSFKGPEFGPAQGMHGATYTVDLEVSVEKLADKLNWVVDIGVLLGILKEVLGVYNYKNLDEVFPGVNTTTEFMSQ 151          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A7S0FMK9_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMK9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.480e-35
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    7 IRMLVMILVSLVAMASAHHPTMGGGSGHKGYSLGIRDSIMIAHSFEG-PQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNELFPG-ENTTTEFMCKA 360
            I +L ++LV+L+A ASA        +    ++LG+RDS+MIAHSF   P FGPA  MHGATYT D EF +  LVE +NWV+DIG AS++L+DVLS+YN KNL+E+FPG E TTTEFMCK 
Sbjct:    2 ISVLNVLLVALLAFASASI----AAAERLPFTLGVRDSLMIAHSFHNHPSFGPAGGMHGATYTCDVEFSSANLVEGTNWVIDIGKASDILADVLSRYNLKNLDEVFPGGEMTTTEFMCKT 117          
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Match: A0A5J4YKC1_PORPP (6-pyruvoyltetrahydropterin synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKC1_PORPP)

HSP 1 Score: 124 bits (312), Expect = 1.830e-34
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   97 YSLGIRDSIMIAHSFEGPQFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNFKNLNEL--FPGENTTTEFMC 354
            ++LG+RDSIMIAHSF G +FGPAQ MHGATYTVD EF TD LV+  NWVVDIG A + L   L  YN+KNL+EL  F G NTTTEFMC
Sbjct:    3 FTLGVRDSIMIAHSFSGAEFGPAQNMHGATYTVDCEFGTDKLVDGCNWVVDIGEALDALGKCLQAYNYKNLDELPQFKGVNTTTEFMC 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig708.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK0_ECTSI2.070e-6684.756-pyruvoyltetrahydropterin synthase n=2 Tax=Ectoca... [more]
A0A7S4DL62_HETAK7.070e-4678.026-pyruvoyltetrahydropterin synthase n=1 Tax=Hetero... [more]
A0A7S2V5M2_9STRA8.240e-4362.506-pyruvoyltetrahydropterin synthase n=1 Tax=Fibroc... [more]
L1J9Q7_GUITC4.820e-4070.536-pyruvoyltetrahydropterin synthase n=3 Tax=Guilla... [more]
A0A836CJP8_9STRA1.220e-3973.566-pyruvoyltetrahydropterin synthase n=1 Tax=Tribon... [more]
W7T312_9STRA2.590e-3973.036-pyruvoyltetrahydropterin synthase n=3 Tax=Monodo... [more]
A0A7S0BJC5_9RHOD1.370e-3770.336-pyruvoyltetrahydropterin synthase (Fragment) n=2... [more]
A0A7S0WCE1_9CRYP2.770e-3664.526-pyruvoyltetrahydropterin synthase n=1 Tax=Hemise... [more]
A0A7S0FMK9_9STRA2.480e-3557.506-pyruvoyltetrahydropterin synthase n=1 Tax=Minuto... [more]
A0A5J4YKC1_PORPP1.830e-3468.186-pyruvoyltetrahydropterin synthase n=1 Tax=Porphy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig708contigM-pyrifera_M_contig708:17937..18746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue5.5e-51
Seed eggNOG ortholog2880.D8LHK0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.6-pyruvoyl tetrahydropterin synthase
EggNOG OGs2CYMG@1,2S557@2759
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size361
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.6697154-CDS-M-pyrifera_M_contig708:17936..181071622816601.6697154-CDS-M-pyrifera_M_contig708:17936..18107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig708 17937..18107 +
1692278070.966902-CDS-M-pyrifera_M_contig708:17936..181071692278070.966902-CDS-M-pyrifera_M_contig708:17936..18107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig708 17937..18107 +
1622816601.688214-CDS-M-pyrifera_M_contig708:18557..187461622816601.688214-CDS-M-pyrifera_M_contig708:18557..18746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig708 18558..18746 +
1692278070.9784422-CDS-M-pyrifera_M_contig708:18557..187461692278070.9784422-CDS-M-pyrifera_M_contig708:18557..18746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig708 18558..18746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig708.16899.1prot_M-pyrifera_M_contig708.16899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig708 17937..18746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig708.16899.1

>prot_M-pyrifera_M_contig708.16899.1 ID=prot_M-pyrifera_M_contig708.16899.1|Name=mRNA_M-pyrifera_M_contig708.16899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MAIRMLVMILVSLVAMASAHHPTMGGGSGHKGYSLGIRDSIMIAHSFEGP
QFGPAQQMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSDVLSKYNF
KNLNELFPGENTTTEFMCKA
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mRNA from alignment at M-pyrifera_M_contig708:17937..18746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig708.16899.1 ID=mRNA_M-pyrifera_M_contig708.16899.1|Name=mRNA_M-pyrifera_M_contig708.16899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig708:17937..18746+ (Macrocystis pyrifera P11B4 male)
ATGGCGATTCGTATGCTGGTAATGATCCTGGTGTCCTTGGTGGCGATGGC CTCGGCCCATCATCCGACGATGGGAGGAGGGAGCGGCCACAAAGGGTACT CACTCGGCATCCGTGACTCCATCATGATCGCGCACAGCTTCGAGGGGCCG CAGTTTGGTCCCGCACAGCAGGTACTCGTACTGCTATACGAGACTTGTGT CGCTATCTGTAGTGTGGCTATCTGTAGTATGAGAATACCACGGAGGCAAT GCAGCGTGCGCATCAAAGATGCCGAGGAGGAAGCGTGCGCACATTCGTCC AGCTAGCTGTGCACTCACTGCGTCTAGTTATGAGTCGCTTGAACCTCGTT ACGTGTATGTACGACTGCACGATTACTTGCTTGTTGAGGTGAATGAAGCC AGCCTTCAGATGGCACGACTGCTGTGTTCGCTTGCTCTGTTTGTTTTTCT GTCCTCTGTCATTGCTGTGTCGATATTCTCGAGGTCGCGCCCACATTTAC AGTAGTACCGCATTCGCCATGTGGTGGTACTGTTGTTGCTGCTCTCTATT GTTAATAGTGAATGATCATACTATGAATAGAGTCATACCAGGTACACTAA AACAGCATCGATATTTCGCAGATGCACGGGGCTACGTACACCGTCGACGC CGAGTTCAAGACGGACGCGCTCGTTGAAAAGTCAAACTGGGTCGTGGACA TCGGCGCCGCCTCGGAGATGCTCTCGGACGTCCTGTCCAAGTACAACTTC AAGAACCTTAACGAGCTATTTCCTGGAGAGAACACGACGACCGAGTTCAT GTGCAAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig708:17937..18746+

>mRNA_M-pyrifera_M_contig708.16899.1 ID=mRNA_M-pyrifera_M_contig708.16899.1|Name=mRNA_M-pyrifera_M_contig708.16899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig708:17937..18746+ (Macrocystis pyrifera P11B4 male)
ATGGCGATTCGTATGCTGGTAATGATCCTGGTGTCCTTGGTGGCGATGGC
CTCGGCCCATCATCCGACGATGGGAGGAGGGAGCGGCCACAAAGGGTACT
CACTCGGCATCCGTGACTCCATCATGATCGCGCACAGCTTCGAGGGGCCG
CAGTTTGGTCCCGCACAGCAGATGGCGATTCGTATGCTGGTAATGATCCT
GGTGTCCTTGGTGGCGATGGCCTCGGCCCATCATCCGACGATGGGAGGAG
GGAGCGGCCACAAAGGGTACTCACTCGGCATCCGTGACTCCATCATGATC
GCGCACAGCTTCGAGGGGCCGCAGTTTGGTCCCGCACAGCAGATGCACGG
GGCTACGTACACCGTCGACGCCGAGTTCAAGACGGACGCGCTCGTTGAAA
AGTCAAACTGGGTCGTGGACATCGGCGCCGCCTCGGAGATGCTCTCGGAC
GTCCTGTCCAAGTACAACTTCAAGAACCTTAACGAGCTATTTCCTGGAGA
GAACACGACGACCGAGTTCATGTGCAAGGCGATGCACGGGGCTACGTACA
CCGTCGACGCCGAGTTCAAGACGGACGCGCTCGTTGAAAAGTCAAACTGG
GTCGTGGACATCGGCGCCGCCTCGGAGATGCTCTCGGACGTCCTGTCCAA
GTACAACTTCAAGAACCTTAACGAGCTATTTCCTGGAGAGAACACGACGA
CCGAGTTCATGTGCAAGGCG
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