mRNA_M-pyrifera_M_contig70767.16891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70767.16891.1
Unique NamemRNA_M-pyrifera_M_contig70767.16891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70767.16891.1 vs. uniprot
Match: A0A517PQC3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQC3_9PLAN)

HSP 1 Score: 317 bits (812), Expect = 4.850e-109
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:    1 LVFYPTSGFGDIDVLYATKGWLSKQPVGKGPQPDEEMLELLKSHPDLLQQVKSHRTSEYYFEVNAYEWDSPISFFDLFTAVNEILHEMEENDSIESILTEVLQDLRSSGQFESDAFANDVLLGVQFSDPSPNEVDLVTRISLAVNSAETHAKICDGYGI 477
            LVFYPTSGFGDIDVLYATKGWLSKQPVGKGPQPDEEMLELLKSHPDLLQQVKSHRTSEYYFEVNAYEWDSPISFFDLFTAVNEILHEMEENDSIESILTEVLQDLRSSGQFESDAFANDVLLGVQFSDPSPNEVDLVTRISLAVNSAETHAKICDGYGI
Sbjct:   31 LVFYPTSGFGDIDVLYATKGWLSKQPVGKGPQPDEEMLELLKSHPDLLQQVKSHRTSEYYFEVNAYEWDSPISFFDLFTAVNEILHEMEENDSIESILTEVLQDLRSSGQFESDAFANDVLLGVQFSDPSPNEVDLVTRISLAVNSAETHAKICDGYGI 189
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BLAST of mRNA_M-pyrifera_M_contig70767.16891.1 vs. uniprot
Match: UPI002014D0CB (hypothetical protein n=2 Tax=Shewanella TaxID=22 RepID=UPI002014D0CB)

HSP 1 Score: 52.0 bits (123), Expect = 4.340e-5
Identity = 37/130 (28.46%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:   94 QPDEEMLELLKSHPDLLQQVKSHRTSEYYFEVNAYEWDSPISFFDLFTAVNEILHEM--------EENDSIESILTEVLQDLRSSGQFESDAFANDVLLGVQFSDPSPNEVDLVTRISLAVNSAETHAKI 459
            Q + E+LE L+ HPDL       + S+   E++A +WD   S  D F  +++++ ++        +E   + + ++E L  +     F++     ++L G+QFSDPS  E+++   IS  VNS + H K+
Sbjct:   78 QSEAELLETLEQHPDLA--ANYLQVSDLQIEMSAPDWDYLYSNIDEFNPLDDLVSQIRDYGLQTHDEEFDVSAFISEHL--VFGIKAFQAKCATGELLTGLQFSDPSIEEMEISENISRQVNSDKWHRKV 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70767.16891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PQC3_9PLAN4.850e-109100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
UPI002014D0CB4.340e-528.46hypothetical protein n=2 Tax=Shewanella TaxID=22 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70767contigM-pyrifera_M_contig70767:691..1170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.2758982-CDS-M-pyrifera_M_contig70767:690..11701622816601.2758982-CDS-M-pyrifera_M_contig70767:690..1170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70767 691..1170 -
1692278070.7865446-CDS-M-pyrifera_M_contig70767:690..11701692278070.7865446-CDS-M-pyrifera_M_contig70767:690..1170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70767 691..1170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70767.16891.1prot_M-pyrifera_M_contig70767.16891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70767 691..1170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70767.16891.1

>prot_M-pyrifera_M_contig70767.16891.1 ID=prot_M-pyrifera_M_contig70767.16891.1|Name=mRNA_M-pyrifera_M_contig70767.16891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
LVFYPTSGFGDIDVLYATKGWLSKQPVGKGPQPDEEMLELLKSHPDLLQQ
VKSHRTSEYYFEVNAYEWDSPISFFDLFTAVNEILHEMEENDSIESILTE
VLQDLRSSGQFESDAFANDVLLGVQFSDPSPNEVDLVTRISLAVNSAETH
AKICDGYGI*
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mRNA from alignment at M-pyrifera_M_contig70767:691..1170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70767.16891.1 ID=mRNA_M-pyrifera_M_contig70767.16891.1|Name=mRNA_M-pyrifera_M_contig70767.16891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig70767:691..1170- (Macrocystis pyrifera P11B4 male)
CTGGTTTTTTATCCGACATCAGGCTTTGGTGATATTGATGTTTTATACGC
AACCAAAGGTTGGTTGAGCAAACAGCCAGTTGGAAAAGGTCCGCAACCTG
ACGAAGAAATGCTCGAGTTGCTTAAATCACATCCGGACTTGTTACAGCAG
GTAAAATCCCATCGGACATCGGAATATTACTTCGAAGTGAATGCGTATGA
ATGGGATTCCCCCATCTCTTTCTTCGACCTTTTTACTGCTGTGAATGAGA
TACTCCATGAAATGGAAGAGAACGACTCAATTGAATCAATACTGACTGAG
GTTTTGCAGGATCTGCGAAGCTCTGGTCAATTCGAAAGTGATGCGTTTGC
CAATGATGTGTTACTGGGGGTTCAGTTTTCTGATCCCAGTCCCAACGAAG
TTGATCTGGTCACAAGAATCTCGCTGGCGGTCAACTCAGCAGAGACGCAT
GCAAAAATCTGTGACGGCTATGGTATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70767:691..1170-

>mRNA_M-pyrifera_M_contig70767.16891.1 ID=mRNA_M-pyrifera_M_contig70767.16891.1|Name=mRNA_M-pyrifera_M_contig70767.16891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig70767:691..1170- (Macrocystis pyrifera P11B4 male)
CTGGTTTTTTATCCGACATCAGGCTTTGGTGATATTGATGTTTTATACGC
AACCAAAGGTTGGTTGAGCAAACAGCCAGTTGGAAAAGGTCCGCAACCTG
ACGAAGAAATGCTCGAGTTGCTTAAATCACATCCGGACTTGTTACAGCAG
GTAAAATCCCATCGGACATCGGAATATTACTTCGAAGTGAATGCGTATGA
ATGGGATTCCCCCATCTCTTTCTTCGACCTTTTTACTGCTGTGAATGAGA
TACTCCATGAAATGGAAGAGAACGACTCAATTGAATCAATACTGACTGAG
GTTTTGCAGGATCTGCGAAGCTCTGGTCAATTCGAAAGTGATGCGTTTGC
CAATGATGTGTTACTGGGGGTTCAGTTTTCTGATCCCAGTCCCAACGAAG
TTGATCTGGTCACAAGAATCTCGCTGGCGGTCAACTCAGCAGAGACGCAT
GCAAAAATCTGTGACGGCTATGGTATCTAGCTGGTTTTTTATCCGACATC
AGGCTTTGGTGATATTGATGTTTTATACGCAACCAAAGGTTGGTTGAGCA
AACAGCCAGTTGGAAAAGGTCCGCAACCTGACGAAGAAATGCTCGAGTTG
CTTAAATCACATCCGGACTTGTTACAGCAGGTAAAATCCCATCGGACATC
GGAATATTACTTCGAAGTGAATGCGTATGAATGGGATTCCCCCATCTCTT
TCTTCGACCTTTTTACTGCTGTGAATGAGATACTCCATGAAATGGAAGAG
AACGACTCAATTGAATCAATACTGACTGAGGTTTTGCAGGATCTGCGAAG
CTCTGGTCAATTCGAAAGTGATGCGTTTGCCAATGATGTGTTACTGGGGG
TTCAGTTTTCTGATCCCAGTCCCAACGAAGTTGATCTGGTCACAAGAATC
TCGCTGGCGGTCAACTCAGCAGAGACGCATGCAAAAATCTGTGACGGCTA
TGGTATCTAG
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