mRNA_M-pyrifera_M_contig70739.16885.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70739.16885.1
Unique NamemRNA_M-pyrifera_M_contig70739.16885.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70739.16885.1 vs. uniprot
Match: A0A7J6LSM1_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LSM1_PERCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.500e-7
Identity = 40/129 (31.01%), Postives = 67/129 (51.94%), Query Frame = 1 
Query:    1 MNSSVLILISGLPGSGKTSLAWSIASLAPARWEIVVHSVDERFVELGGRKEKDEEESARLLHRARRDCLEQCANSLRTRRCVAI-LDDTNHLRSMRRDAARVSTSVGASYLHVFLNTGIEVAMMRNKSR 384
            M S+V++++ GLP SGK++L+  + S     + I   ++  R +   G  E++ +    L    RR  L++ A  LR    + + +DD   LRSMR+   + + SVGA    VF+N  +E  + RN  R
Sbjct:    1 MPSNVVVILCGLPASGKSTLSEKLKSQRADTYLIEYDAIGRRLLRENGWGEQEFDPG--LWREGRRVALQEMALVLRRSEGITVVMDDNQFLRSMRKSVCKAAWSVGAGVCCVFMNCPLEECLKRNAER 127
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70739.16885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7J6LSM1_PERCH3.500e-731.01Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70739contigM-pyrifera_M_contig70739:497..955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.9267435-CDS-M-pyrifera_M_contig70739:496..9551622816600.9267435-CDS-M-pyrifera_M_contig70739:496..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70739 497..955 -
1692278070.6014223-CDS-M-pyrifera_M_contig70739:496..9551692278070.6014223-CDS-M-pyrifera_M_contig70739:496..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70739 497..955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70739.16885.1prot_M-pyrifera_M_contig70739.16885.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70739 497..955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70739.16885.1

>prot_M-pyrifera_M_contig70739.16885.1 ID=prot_M-pyrifera_M_contig70739.16885.1|Name=mRNA_M-pyrifera_M_contig70739.16885.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MNSSVLILISGLPGSGKTSLAWSIASLAPARWEIVVHSVDERFVELGGRK
EKDEEESARLLHRARRDCLEQCANSLRTRRCVAILDDTNHLRSMRRDAAR
VSTSVGASYLHVFLNTGIEVAMMRNKSREASTRVSEESFSKIAQSLELSP
YFK
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mRNA from alignment at M-pyrifera_M_contig70739:497..955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70739.16885.1 ID=mRNA_M-pyrifera_M_contig70739.16885.1|Name=mRNA_M-pyrifera_M_contig70739.16885.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig70739:497..955- (Macrocystis pyrifera P11B4 male)
ATGAATTCTTCTGTTTTAATCCTCATATCTGGTCTTCCAGGATCTGGAAA
AACAAGTTTAGCATGGAGCATTGCTTCTCTTGCTCCAGCTCGTTGGGAAA
TTGTTGTTCATTCGGTGGATGAGAGGTTTGTGGAGCTTGGTGGTCGAAAG
GAGAAGGATGAGGAAGAATCTGCACGCCTCCTACATAGAGCAAGACGAGA
TTGCTTGGAGCAATGTGCAAATAGTTTAAGAACTCGAAGATGTGTTGCAA
TTTTGGACGACACAAACCATTTGCGGTCAATGCGCCGGGATGCAGCTAGA
GTTTCTACAAGTGTGGGTGCTTCTTACCTGCATGTGTTTCTAAATACAGG
AATTGAAGTTGCTATGATGCGGAATAAGAGCAGAGAAGCGAGTACTCGAG
TGTCTGAAGAATCGTTCTCGAAAATTGCGCAATCCTTGGAACTATCTCCA
TATTTTAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70739:497..955-

>mRNA_M-pyrifera_M_contig70739.16885.1 ID=mRNA_M-pyrifera_M_contig70739.16885.1|Name=mRNA_M-pyrifera_M_contig70739.16885.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig70739:497..955- (Macrocystis pyrifera P11B4 male)
ATGAATTCTTCTGTTTTAATCCTCATATCTGGTCTTCCAGGATCTGGAAA
AACAAGTTTAGCATGGAGCATTGCTTCTCTTGCTCCAGCTCGTTGGGAAA
TTGTTGTTCATTCGGTGGATGAGAGGTTTGTGGAGCTTGGTGGTCGAAAG
GAGAAGGATGAGGAAGAATCTGCACGCCTCCTACATAGAGCAAGACGAGA
TTGCTTGGAGCAATGTGCAAATAGTTTAAGAACTCGAAGATGTGTTGCAA
TTTTGGACGACACAAACCATTTGCGGTCAATGCGCCGGGATGCAGCTAGA
GTTTCTACAAGTGTGGGTGCTTCTTACCTGCATGTGTTTCTAAATACAGG
AATTGAAGTTGCTATGATGCGGAATAAGAGCAGAGAAGCGAGTACTCGAG
TGTCTGAAGAATCGTTCTCGAAAATTGCGCAATCCTTGGAACTATCTCCA
TATTTTAAAATGAATTCTTCTGTTTTAATCCTCATATCTGGTCTTCCAGG
ATCTGGAAAAACAAGTTTAGCATGGAGCATTGCTTCTCTTGCTCCAGCTC
GTTGGGAAATTGTTGTTCATTCGGTGGATGAGAGGTTTGTGGAGCTTGGT
GGTCGAAAGGAGAAGGATGAGGAAGAATCTGCACGCCTCCTACATAGAGC
AAGACGAGATTGCTTGGAGCAATGTGCAAATAGTTTAAGAACTCGAAGAT
GTGTTGCAATTTTGGACGACACAAACCATTTGCGGTCAATGCGCCGGGAT
GCAGCTAGAGTTTCTACAAGTGTGGGTGCTTCTTACCTGCATGTGTTTCT
AAATACAGGAATTGAAGTTGCTATGATGCGGAATAAGAGCAGAGAAGCGA
GTACTCGAGTGTCTGAAGAATCGTTCTCGAAAATTGCGCAATCCTTGGAA
CTATCTCCATATTTTAAA
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