mRNA_M-pyrifera_M_contig70728.16880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70728.16880.1
Unique NamemRNA_M-pyrifera_M_contig70728.16880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A7W4EJ71_9FLAO (DUF1573 domain-containing protein n=4 Tax=Flavobacteriales TaxID=200644 RepID=A0A7W4EJ71_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 2.520e-6
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 1 
Query:  175 PAEGADPERP--------NFHDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            P E + PE+P          HDFG + +G V+ H + + N   +P+ I  + PACGCT    TK+ +
Sbjct:   33 PVEESTPEQPMTKASFAKEEHDFGTMKKGEVVQHVYEVTNTGDKPLYINSVQPACGCTAPDYTKDAI 99
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A3D8LGT7_9BACT (DUF1573 domain-containing protein n=3 Tax=Pontibacter TaxID=323449 RepID=A0A3D8LGT7_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.740e-6
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            H+FG +++G V+ HTF   N   +P+ I+R+D  CGCT    TKE V
Sbjct:   48 HNFGDITQGDVVEHTFKFTNTGTQPLVIERVDVTCGCTTPNWTKEPV 94
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A239C4P5_9BACT (Uncharacterized protein n=1 Tax=Pontibacter ummariensis TaxID=1610492 RepID=A0A239C4P5_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.740e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            H+FG +++G V+ HTF   N   +P+ I+R+D +CGCT    TKE V
Sbjct:   48 HNFGDITQGDVVEHTFKFTNTGTQPLVIERVDVSCGCTTPAWTKEPV 94
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: UPI001E2904FC (DUF1573 domain-containing protein n=1 Tax=Pontibacter sp. XAAS-A31 TaxID=2894083 RepID=UPI001E2904FC)

HSP 1 Score: 52.4 bits (124), Expect = 5.370e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            H+FG +++G V+ HTF+  N   +P+ I+R+D  CGCT    TKE V
Sbjct:   48 HNFGDITQGDVVEHTFTFKNTGTQPLVIERVDVTCGCTTPSWTKEPV 94
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A2E5X463_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X463_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 6.100e-6
Identity = 29/74 (39.19%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  160 GLVFLPAEGADPERP-------NFHDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETVEGE 360
            G+     EG DP            HDFG V++GAVL HTFS+ +     + I++  P CGCTVA++  E   GE
Sbjct:  108 GIAVTGNEGIDPGAKLEYTFGSEKHDFGKVTQGAVLDHTFSLKSAGTSDLVIRQAKPTCGCTVAQVVVENDAGE 181
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A4P8RMM0_9BACT (Uncharacterized protein n=1 Tax=Pontibacter sp. SGAir0037 TaxID=2571030 RepID=A0A4P8RMM0_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.760e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            H+FG +++G V+ HTF+  N   +P+ I+R+D  CGCT    TKE V
Sbjct:   48 HNFGDITQGDVVEHTFTFKNTGNQPLVIERVDVTCGCTTPAWTKEPV 94
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A399SF62_9BACT (DUF1573 domain-containing protein n=1 Tax=Pontibacter oryzae TaxID=2304593 RepID=A0A399SF62_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.020e-5
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            H+FG +++G V+ HTF   N   +P+ I+R+D +CGCT    TKE V
Sbjct:   46 HNFGDITQGDVVEHTFKFKNTGNQPLVIERVDVSCGCTTPDWTKEPV 92
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A2D5WAG9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5WAG9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.140e-5
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETVEGE 360
            HDFG V++GAVL HTFS+ +     + I++  P CGCTVA++  E   GE
Sbjct:  138 HDFGKVTQGAVLDHTFSLKSAGTSDLIIRQAKPTCGCTVAQMLVENDAGE 187
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A7V0YJA5_9BACT (DUF1573 domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V0YJA5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-5
Identity = 19/54 (35.19%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  193 PERPNFHDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETVE 354
            P   + H+FGI+++G V+ HTF + N   + + + R++ +CGCT   L+K+T++
Sbjct:   23 PIGSDIHNFGIITKGEVVKHTFQLKNISKKTLNLDRVESSCGCTATLLSKKTLK 76
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BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Match: A0A1I7FXW3_9BACT (Uncharacterized protein n=1 Tax=Pontibacter akesuensis TaxID=388950 RepID=A0A1I7FXW3_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.380e-5
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  211 HDFGIVSEGAVLHHTFSMVNRDPRPVEIQRIDPACGCTVARLTKETV 351
            ++FG +S+G V+ HTF+  N   +P+ I+R+D +CGCT    TKE +
Sbjct:   46 YNFGDISQGDVVEHTFNFKNTGTQPLVIERVDVSCGCTTPAWTKEPI 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70728.16880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7W4EJ71_9FLAO2.520e-634.33DUF1573 domain-containing protein n=4 Tax=Flavobac... [more]
A0A3D8LGT7_9BACT2.740e-644.68DUF1573 domain-containing protein n=3 Tax=Pontibac... [more]
A0A239C4P5_9BACT2.740e-644.68Uncharacterized protein n=1 Tax=Pontibacter ummari... [more]
UPI001E2904FC5.370e-644.68DUF1573 domain-containing protein n=1 Tax=Pontibac... [more]
A0A2E5X463_9BACT6.100e-639.19Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A4P8RMM0_9BACT7.760e-644.68Uncharacterized protein n=1 Tax=Pontibacter sp. SG... [more]
A0A399SF62_9BACT1.020e-544.68DUF1573 domain-containing protein n=1 Tax=Pontibac... [more]
A0A2D5WAG9_9BACT1.140e-548.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7V0YJA5_9BACT1.300e-535.19DUF1573 domain-containing protein n=1 Tax=Ignaviba... [more]
A0A1I7FXW3_9BACT1.380e-542.55Uncharacterized protein n=1 Tax=Pontibacter akesue... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70728contigM-pyrifera_M_contig70728:807..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.7094882-CDS-M-pyrifera_M_contig70728:806..11661622816600.7094882-CDS-M-pyrifera_M_contig70728:806..1166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70728 807..1166 +
1692278070.4665356-CDS-M-pyrifera_M_contig70728:806..11661692278070.4665356-CDS-M-pyrifera_M_contig70728:806..1166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70728 807..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70728.16880.1prot_M-pyrifera_M_contig70728.16880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70728 807..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70728.16880.1

>prot_M-pyrifera_M_contig70728.16880.1 ID=prot_M-pyrifera_M_contig70728.16880.1|Name=mRNA_M-pyrifera_M_contig70728.16880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MRIPLERALLGVLLASLPLLTACDDRPTDGVEAAQGAPGAAQQAPTGDVA
GAEGLVFLPAEGADPERPNFHDFGIVSEGAVLHHTFSMVNRDPRPVEIQR
IDPACGCTVARLTKETVEGE
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mRNA from alignment at M-pyrifera_M_contig70728:807..1166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70728.16880.1 ID=mRNA_M-pyrifera_M_contig70728.16880.1|Name=mRNA_M-pyrifera_M_contig70728.16880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig70728:807..1166+ (Macrocystis pyrifera P11B4 male)
ATGCGAATCCCCCTCGAGCGGGCCCTCCTAGGGGTCCTCCTCGCCTCACT
CCCCCTCCTGACCGCCTGCGACGACCGCCCCACGGACGGCGTCGAGGCCG
CGCAAGGCGCCCCGGGCGCCGCCCAACAGGCGCCCACCGGCGACGTGGCC
GGCGCAGAAGGCCTCGTCTTCCTGCCGGCCGAAGGTGCCGACCCCGAGCG
GCCCAACTTCCACGACTTCGGGATCGTCTCCGAGGGCGCGGTCCTGCACC
ACACCTTCTCGATGGTGAACCGCGACCCGCGGCCCGTCGAGATCCAACGG
ATCGACCCCGCGTGTGGCTGCACGGTGGCCCGGCTGACCAAGGAGACCGT
CGAAGGCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70728:807..1166+

>mRNA_M-pyrifera_M_contig70728.16880.1 ID=mRNA_M-pyrifera_M_contig70728.16880.1|Name=mRNA_M-pyrifera_M_contig70728.16880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig70728:807..1166+ (Macrocystis pyrifera P11B4 male)
ATGCGAATCCCCCTCGAGCGGGCCCTCCTAGGGGTCCTCCTCGCCTCACT
CCCCCTCCTGACCGCCTGCGACGACCGCCCCACGGACGGCGTCGAGGCCG
CGCAAGGCGCCCCGGGCGCCGCCCAACAGGCGCCCACCGGCGACGTGGCC
GGCGCAGAAGGCCTCGTCTTCCTGCCGGCCGAAGGTGCCGACCCCGAGCG
GCCCAACTTCCACGACTTCGGGATCGTCTCCGAGGGCGCGGTCCTGCACC
ACACCTTCTCGATGGTGAACCGCGACCCGCGGCCCGTCGAGATCCAACGG
ATCGACCCCGCGTGTGGCTGCACGGTGGCCCGGCTGACCAAGGAGACCGT
CGAAGGCGAGATGCGAATCCCCCTCGAGCGGGCCCTCCTAGGGGTCCTCC
TCGCCTCACTCCCCCTCCTGACCGCCTGCGACGACCGCCCCACGGACGGC
GTCGAGGCCGCGCAAGGCGCCCCGGGCGCCGCCCAACAGGCGCCCACCGG
CGACGTGGCCGGCGCAGAAGGCCTCGTCTTCCTGCCGGCCGAAGGTGCCG
ACCCCGAGCGGCCCAACTTCCACGACTTCGGGATCGTCTCCGAGGGCGCG
GTCCTGCACCACACCTTCTCGATGGTGAACCGCGACCCGCGGCCCGTCGA
GATCCAACGGATCGACCCCGCGTGTGGCTGCACGGTGGCCCGGCTGACCA
AGGAGACCGTCGAAGGCGAG
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