mRNA_M-pyrifera_M_contig70696.16876.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70696.16876.1
Unique NamemRNA_M-pyrifera_M_contig70696.16876.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A358A5Q1_9ACTN (Translational GTPase TypA (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A5Q1_9ACTN)

HSP 1 Score: 467 bits (1202), Expect = 5.400e-165
Identity = 230/278 (82.73%), Postives = 261/278 (93.88%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPRD 834
            IK+RL+AELIG+VSIRVL T+RPD WEVQGRGELQLA+LVETMRREGFELT+GKPEVLT+EIDGT++EPTERLT+DVPE++VGAVTQLLG RKA ME MSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEG+ PWAG+IRTR +GS+VADR G++TGYAI +LQER+AL+V PG +VYEGM+VGEN RNEDMDVNI REK +TNIRTQSSDDTIRLTPPK+FSLEQALE++A+DECVEVTP TVR+RKTVLDAGERARI+K+ K PRD
Sbjct:    1 IKSRLDAELIGHVSIRVLPTERPDAWEVQGRGELQLAVLVETMRREGFELTIGKPEVLTQEIDGTLNEPTERLTVDVPEEHVGAVTQLLGARKATMETMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGWTPWAGDIRTRDRGSVVADRIGQSTGYAIQSLQERSALYVAPGEQVYEGMVVGENSRNEDMDVNICREKAKTNIRTQSSDDTIRLTPPKVFSLEQALESIANDECVEVTPVTVRIRKTVLDAGERARILKKQKHPRD 278
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A2E8LDQ0_9ACTN (50S ribosomal subunit assembly factor BipA n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LDQ0_9ACTN)

HSP 1 Score: 474 bits (1221), Expect = 4.340e-163
Identity = 233/278 (83.81%), Postives = 262/278 (94.24%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPRD 834
            IK+RL+AELIGNVSIRVL T+RPD WEVQGRGELQLA+LVETMRREGFELT+GKPEVLT+EI GT++EPTERLT+DVPE++VGAVTQL+G RKA ME+MSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEG+ PWAGEIRTR +GS+VADRTG++TGYAI +LQERT L+V PG +VYEGM+VGEN RNEDMDVNI REK +TNIRTQSSDDTIRLTPPK+FSLEQALE++ADDECVEVTPETVR+RKTVLDAGERARI+K+ K PRD
Sbjct:  322 IKSRLDAELIGNVSIRVLPTERPDAWEVQGRGELQLAVLVETMRREGFELTIGKPEVLTQEIGGTLNEPTERLTVDVPEEHVGAVTQLIGARKATMENMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGWTPWAGEIRTRDRGSVVADRTGQSTGYAIQSLQERTVLYVAPGEQVYEGMVVGENSRNEDMDVNICREKAKTNIRTQSSDDTIRLTPPKVFSLEQALESIADDECVEVTPETVRIRKTVLDAGERARILKKQKHPRD 599
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A3M2GAA0_ACTSX (50S ribosomal subunit assembly factor BipA n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GAA0_ACTSX)

HSP 1 Score: 449 bits (1156), Expect = 2.910e-153
Identity = 219/274 (79.93%), Postives = 247/274 (90.15%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMK 822
            +KARL+AEL+GNVS+RVL TDRPDTWEVQGRGELQLA+LVETMRREGFELTVGKPEVLTR+IDGT+HEPTERLT+DVP+++VGAVTQLLGER+ ++ DM NHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEG+ PWAGE+R R  GS+VADR G  TGYAIA LQERT L+VGPG +VYEGMIVGEN R +DMDVNI REKKQTN+R  ++D+T+RLTPP+  SLEQALET+ADDECVEVTP  VR+RK VLDAGERAR  KR K
Sbjct:  322 VKARLDAELVGNVSLRVLTTDRPDTWEVQGRGELQLAVLVETMRREGFELTVGKPEVLTRDIDGTVHEPTERLTVDVPDEHVGAVTQLLGERRGELVDMVNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGWRPWAGELRPRTTGSVVADRRGVATGYAIAGLQERTTLYVGPGTEVYEGMIVGENSRADDMDVNICREKKQTNVRAAAADETVRLTPPRRLSLEQALETIADDECVEVTPTHVRLRKVVLDAGERARTAKRRK 595
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A2E9W3G6_9ACTN (50S ribosomal subunit assembly factor BipA n=7 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9W3G6_9ACTN)

HSP 1 Score: 442 bits (1138), Expect = 2.240e-150
Identity = 219/277 (79.06%), Postives = 246/277 (88.81%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +K RL+AEL+GNVSIRVL T+RPDTWEVQGRGELQLAILVETMRREGFELTVGKP VL RE+DG ++EPTERL++DVPE+++GAVTQLLGERKA+MEDM+NHGTGWVRLDYVVPARALIGFRTEFLTETRGTG+LHHVFEG+ PW GE+RTR  GSIVADR G TT YAI +LQERT LFVGP  KVY GMIVGENPR EDMDVNI REKK TN+R  +SDDTIRLTPP+  SLEQALE VADDECVEVTP  +R+RK VLD+GERAR +K++K  R
Sbjct:  333 VKVRLDAELVGNVSIRVLPTERPDTWEVQGRGELQLAILVETMRREGFELTVGKPAVLLREVDGVLNEPTERLSVDVPEEHMGAVTQLLGERKARMEDMTNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGLLHHVFEGWEPWKGELRTRQTGSIVADRVGATTAYAITSLQERTTLFVGPTEKVYGGMIVGENPRAEDMDVNICREKKLTNVRASASDDTIRLTPPRRLSLEQALEYVADDECVEVTPAVIRLRKVVLDSGERARSLKKLKNAR 609
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A2E5P3I7_9ACTN (50S ribosomal subunit assembly factor BipA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5P3I7_9ACTN)

HSP 1 Score: 438 bits (1127), Expect = 1.030e-148
Identity = 216/277 (77.98%), Postives = 243/277 (87.73%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +KARL+AELIGNVS+RVL T+RPDTWEVQGRGELQLA+LVETMRREGFELTVGKPEVL RE D T+HEPTERL++DVPE+YVGAVTQLLGERKA+MEDM+NHGTGWVRLDYVV ARALIGFRTEFLTETRGTG+LHHVFEG+ PW GE+RTR  GS+VADR G  T YAI  LQ+RT LFVGP  +VY GMIVGENPR EDMDVNI REKK TN+R  +SDDT+RLTPP+  SLEQALE +ADDECVEVTP+ VR+RK  LDAG RAR +K++K  R
Sbjct:  333 VKARLDAELIGNVSLRVLPTERPDTWEVQGRGELQLAVLVETMRREGFELTVGKPEVLLREFDSTLHEPTERLSVDVPEEYVGAVTQLLGERKARMEDMTNHGTGWVRLDYVVAARALIGFRTEFLTETRGTGLLHHVFEGWEPWMGELRTRQSGSVVADRLGVATPYAITGLQDRTTLFVGPTEEVYGGMIVGENPRAEDMDVNICREKKLTNVRAAASDDTVRLTPPRKLSLEQALEYIADDECVEVTPDAVRLRKVELDAGTRARTVKKLKQAR 609
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A2E6UMV7_9ACTN (50S ribosomal subunit assembly factor BipA n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UMV7_9ACTN)

HSP 1 Score: 435 bits (1119), Expect = 1.670e-147
Identity = 215/277 (77.62%), Postives = 242/277 (87.36%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +KARL+AEL+GNVS+RVL TDRPDTWEVQGRGELQLA+LVETMRREGFELTVGKP V+TRE DGT+HEPTERL++DVPE++VGAVTQLLGER+A+M DM NHGTGWVRLDYVV ARALIGFRTEFLTETRG GMLHHVFEG+ PW GE+RTR  G++VADRTG  T YAIA +QER +LFV P  KVY GMIVGENPR EDMDVNI REKK TN+R  ++DDTIRLTPP+  SLEQALE +ADDECVEVTP  VR+RK  LDAGERAR +KR+K  R
Sbjct:  333 VKARLDAELVGNVSLRVLPTDRPDTWEVQGRGELQLAVLVETMRREGFELTVGKPAVVTREFDGTLHEPTERLSVDVPEEHVGAVTQLLGERRARMVDMVNHGTGWVRLDYVVAARALIGFRTEFLTETRGAGMLHHVFEGWEPWLGELRTRPTGTVVADRTGAVTAYAIAGIQERASLFVAPTEKVYAGMIVGENPRAEDMDVNICREKKLTNVRAAAADDTIRLTPPRRLSLEQALEFIADDECVEVTPGAVRLRKVTLDAGERARNLKRLKHAR 609
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A2E8N9B8_9ACTN (EFG_C domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8N9B8_9ACTN)

HSP 1 Score: 426 bits (1094), Expect = 7.230e-147
Identity = 207/277 (74.73%), Postives = 240/277 (86.64%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +KARL+AEL+GNVS+RVL T+RPD WEVQGRGELQLA+LVETMRREGFELTVGKP VL REID T+HEPTERL++DVPE++VGAVTQLLGER+A+MEDM+NHGTGWVRLDYVV ARALIGFRTEFLTETRGTG+LHHVFEG+ PW GE+RTR+ GS+VADR G  T YAI  LQER ++FVGP  +VY GMIVGENPR E MDVN+ REKK TN+R  +SDDT+RLTPP+  +LEQALE +ADDECVEVTP  +R+RK  L AG RAR +KR+K  R
Sbjct:  111 VKARLDAELVGNVSLRVLPTERPDAWEVQGRGELQLAVLVETMRREGFELTVGKPAVLLREIDDTLHEPTERLSVDVPEEHVGAVTQLLGERRARMEDMTNHGTGWVRLDYVVAARALIGFRTEFLTETRGTGLLHHVFEGWEPWMGELRTRLTGSVVADRQGAATAYAITGLQERASMFVGPTEQVYGGMIVGENPRAEXMDVNVCREKKLTNVRAAASDDTVRLTPPRRLTLEQALEYIADDECVEVTPAAIRLRKVELXAGARARTVKRLKHAR 387
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A381TM58_9ZZZZ (Tr-type G domain-containing protein (Fragment) n=3 Tax=root TaxID=1 RepID=A0A381TM58_9ZZZZ)

HSP 1 Score: 433 bits (1113), Expect = 1.340e-146
Identity = 213/277 (76.90%), Postives = 242/277 (87.36%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +KARL+ ELIGNVS+RVL T+RPDTWEVQGRGELQLA+LVETMRREGFELTVGKPEVL RE +GT+HEPTERL++DVPE++VGAVTQLLGERKA+MEDM+NHGTGWVRLDYVV ARALIGFRTEFLTETRGTG+LHHVFEG+ PW GE+RTR  GS+VADR G  T YAI  LQ+RT LFVGP  +VY GMI+GENPR EDMDVNI REKK TN+R  +SDDT+RLTPP+  SLEQALE +ADDECVEVTP  VR+RK  LDAG RAR +K++K  R
Sbjct:  333 VKARLDTELIGNVSLRVLPTERPDTWEVQGRGELQLAVLVETMRREGFELTVGKPEVLLREFNGTLHEPTERLSVDVPEEHVGAVTQLLGERKARMEDMTNHGTGWVRLDYVVAARALIGFRTEFLTETRGTGLLHHVFEGWEPWMGELRTRQSGSVVADRLGVATPYAITGLQDRTTLFVGPTEEVYGGMIIGENPRAEDMDVNICREKKLTNVRAAASDDTVRLTPPRRLSLEQALEYIADDECVEVTPGAVRLRKVELDAGARARTVKKLKNAR 609
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A520Y2X4_9ACTN (50S ribosomal subunit assembly factor BipA n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y2X4_9ACTN)

HSP 1 Score: 429 bits (1104), Expect = 3.820e-145
Identity = 209/279 (74.91%), Postives = 243/279 (87.10%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPRDA 837
            IK RL+ EL+GNVSIRV+DTDRPDTWEVQGRGELQLA+LVETMRREGFELTVGKP VLT+++DGT+HEPTERL IDVPE+YVGAVTQLLGERK KMEDM+NHG GWVRL+YVVPAR+LIGFRT+F+TETRGTG+ +HVFEG+IPW GEIR R  GS+VADRTG++T +A+  LQER   ++ P V VYEGMI+GENPRNEDMDVNI +EKK  NIRTQSSDDT+RLTPPK+ SLE ALET+ DDECVEVTP  +R+RK  L+A  RAR  KR+K  R+A
Sbjct:  333 IKDRLDKELVGNVSIRVIDTDRPDTWEVQGRGELQLAVLVETMRREGFELTVGKPAVLTKDVDGTLHEPTERLMIDVPEEYVGAVTQLLGERKGKMEDMANHGDGWVRLNYVVPARSLIGFRTQFMTETRGTGLANHVFEGWIPWQGEIRMRHNGSVVADRTGQSTIFAVTNLQERATFYIPPSVDVYEGMIIGENPRNEDMDVNICKEKKLDNIRTQSSDDTVRLTPPKVLSLEGALETIGDDECVEVTPANIRLRKVNLNATTRARETKRLKHAREA 611
[Close]
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Match: A0A3D5K7Q9_9ACTN (Translational GTPase TypA (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K7Q9_9ACTN)

HSP 1 Score: 420 bits (1079), Expect = 7.930e-145
Identity = 206/277 (74.37%), Postives = 237/277 (85.56%), Query Frame = 1 
Query:    1 IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFELTVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMSNHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIRTRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNEDMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVTPETVRMRKTVLDAGERARIIKRMKAPR 831
            +K RL+AEL+GNVS+RV+ T+RPDTWEVQGRGELQLAILVETMRREGFELTVGKP VL REID T+HEPTERL++DVPE+YVGAVTQLLGER+A+M DM+NHGTGWVRLDYVV ARALIGFRTEF+TETRGTG+LHHVFEG+ PW G++R R  GS+VADR G  T YAI  +QER ++F+GP  +VY GMIVGENPR EDMDVNI REKK TN+R  +SDDTIRLTPP+  SLEQALE +ADDECVEV P  VR+RK  LDA  RAR +KR+K  R
Sbjct:   95 VKDRLDAELVGNVSLRVMPTERPDTWEVQGRGELQLAILVETMRREGFELTVGKPAVLLREIDDTLHEPTERLSVDVPEEYVGAVTQLLGERRARMGDMTNHGTGWVRLDYVVAARALIGFRTEFMTETRGTGLLHHVFEGWEPWMGDLRIRQTGSVVADRIGSATAYAITGIQERASMFIGPTEEVYAGMIVGENPRAEDMDVNICREKKLTNVRASASDDTIRLTPPRRLSLEQALEYIADDECVEVMPGVVRLRKVELDATARARTVKRLKNAR 371
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70696.16876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358A5Q1_9ACTN5.400e-16582.73Translational GTPase TypA (Fragment) n=1 Tax=Acidi... [more]
A0A2E8LDQ0_9ACTN4.340e-16383.8150S ribosomal subunit assembly factor BipA n=8 Tax... [more]
A0A3M2GAA0_ACTSX2.910e-15379.9350S ribosomal subunit assembly factor BipA n=1 Tax... [more]
A0A2E9W3G6_9ACTN2.240e-15079.0650S ribosomal subunit assembly factor BipA n=7 Tax... [more]
A0A2E5P3I7_9ACTN1.030e-14877.9850S ribosomal subunit assembly factor BipA n=1 Tax... [more]
A0A2E6UMV7_9ACTN1.670e-14777.6250S ribosomal subunit assembly factor BipA n=4 Tax... [more]
A0A2E8N9B8_9ACTN7.230e-14774.73EFG_C domain-containing protein n=2 Tax=Acidimicro... [more]
A0A381TM58_9ZZZZ1.340e-14676.90Tr-type G domain-containing protein (Fragment) n=3... [more]
A0A520Y2X4_9ACTN3.820e-14574.9150S ribosomal subunit assembly factor BipA n=2 Tax... [more]
A0A3D5K7Q9_9ACTN7.930e-14574.37Translational GTPase TypA (Fragment) n=1 Tax=Acidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70696contigM-pyrifera_M_contig70696:257..1096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score402.9
Seed ortholog evalue1.2e-109
Seed eggNOG ortholog1035308.AQYY01000002_gene953
Preferred nametypA
KEGG koko:K06207
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840
EggNOG free text desc.Elongation factor Tu domain 2
EggNOG OGs1TQ5Y@1239,248EB@186801,2610Y@186807,COG1217@1,COG1217@2
COG Functional cat.T
Best tax levelPeptococcaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size840
Cds size840
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.4766724-CDS-M-pyrifera_M_contig70696:256..10961622816600.4766724-CDS-M-pyrifera_M_contig70696:256..1096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70696 257..1096 -
1692278070.3393748-CDS-M-pyrifera_M_contig70696:256..10961692278070.3393748-CDS-M-pyrifera_M_contig70696:256..1096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70696 257..1096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70696.16876.1prot_M-pyrifera_M_contig70696.16876.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70696 257..1096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70696.16876.1

>prot_M-pyrifera_M_contig70696.16876.1 ID=prot_M-pyrifera_M_contig70696.16876.1|Name=mRNA_M-pyrifera_M_contig70696.16876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=280bp
IKARLEAELIGNVSIRVLDTDRPDTWEVQGRGELQLAILVETMRREGFEL
TVGKPEVLTREIDGTIHEPTERLTIDVPEDYVGAVTQLLGERKAKMEDMS
NHGTGWVRLDYVVPARALIGFRTEFLTETRGTGMLHHVFEGYIPWAGEIR
TRIKGSIVADRTGETTGYAIAALQERTALFVGPGVKVYEGMIVGENPRNE
DMDVNIVREKKQTNIRTQSSDDTIRLTPPKLFSLEQALETVADDECVEVT
PETVRMRKTVLDAGERARIIKRMKAPRDA*
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mRNA from alignment at M-pyrifera_M_contig70696:257..1096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70696.16876.1 ID=mRNA_M-pyrifera_M_contig70696.16876.1|Name=mRNA_M-pyrifera_M_contig70696.16876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig70696:257..1096- (Macrocystis pyrifera P11B4 male)
ATCAAGGCCCGACTCGAGGCCGAGCTGATCGGCAACGTCTCCATTCGGGT
GCTCGACACCGACCGACCCGACACGTGGGAAGTCCAGGGACGTGGCGAGC
TTCAGCTCGCGATCCTGGTCGAGACCATGCGCCGCGAGGGCTTCGAGCTC
ACGGTCGGCAAGCCCGAGGTGCTGACCCGGGAGATCGACGGCACGATCCA
CGAGCCGACCGAACGCCTCACCATCGACGTGCCCGAGGACTATGTGGGCG
CCGTCACCCAGCTGCTGGGTGAGCGCAAGGCGAAGATGGAAGACATGTCG
AACCACGGCACCGGCTGGGTGCGTCTCGACTATGTCGTGCCGGCCCGTGC
TCTGATCGGGTTCCGTACCGAATTCCTCACCGAGACCCGTGGCACCGGCA
TGCTGCACCACGTGTTCGAGGGCTACATCCCGTGGGCCGGTGAGATCCGC
ACCCGTATCAAGGGCAGCATCGTCGCCGACCGCACGGGCGAGACCACCGG
CTACGCCATCGCCGCGCTCCAGGAGCGCACGGCCCTGTTCGTCGGCCCCG
GCGTGAAGGTCTACGAGGGCATGATCGTCGGCGAGAACCCTCGCAACGAG
GACATGGACGTCAACATCGTTCGTGAGAAGAAGCAGACCAACATCCGGAC
CCAGTCGAGCGACGACACGATCCGGCTCACACCACCGAAGCTGTTCTCGC
TCGAGCAGGCGCTCGAGACCGTCGCCGACGACGAGTGCGTCGAGGTGACC
CCCGAGACCGTCCGCATGCGCAAGACGGTGCTCGACGCGGGCGAGCGGGC
CCGCATCATCAAGCGGATGAAGGCCCCCCGCGACGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70696:257..1096-

>mRNA_M-pyrifera_M_contig70696.16876.1 ID=mRNA_M-pyrifera_M_contig70696.16876.1|Name=mRNA_M-pyrifera_M_contig70696.16876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1680bp|location=Sequence derived from alignment at M-pyrifera_M_contig70696:257..1096- (Macrocystis pyrifera P11B4 male)
ATCAAGGCCCGACTCGAGGCCGAGCTGATCGGCAACGTCTCCATTCGGGT
GCTCGACACCGACCGACCCGACACGTGGGAAGTCCAGGGACGTGGCGAGC
TTCAGCTCGCGATCCTGGTCGAGACCATGCGCCGCGAGGGCTTCGAGCTC
ACGGTCGGCAAGCCCGAGGTGCTGACCCGGGAGATCGACGGCACGATCCA
CGAGCCGACCGAACGCCTCACCATCGACGTGCCCGAGGACTATGTGGGCG
CCGTCACCCAGCTGCTGGGTGAGCGCAAGGCGAAGATGGAAGACATGTCG
AACCACGGCACCGGCTGGGTGCGTCTCGACTATGTCGTGCCGGCCCGTGC
TCTGATCGGGTTCCGTACCGAATTCCTCACCGAGACCCGTGGCACCGGCA
TGCTGCACCACGTGTTCGAGGGCTACATCCCGTGGGCCGGTGAGATCCGC
ACCCGTATCAAGGGCAGCATCGTCGCCGACCGCACGGGCGAGACCACCGG
CTACGCCATCGCCGCGCTCCAGGAGCGCACGGCCCTGTTCGTCGGCCCCG
GCGTGAAGGTCTACGAGGGCATGATCGTCGGCGAGAACCCTCGCAACGAG
GACATGGACGTCAACATCGTTCGTGAGAAGAAGCAGACCAACATCCGGAC
CCAGTCGAGCGACGACACGATCCGGCTCACACCACCGAAGCTGTTCTCGC
TCGAGCAGGCGCTCGAGACCGTCGCCGACGACGAGTGCGTCGAGGTGACC
CCCGAGACCGTCCGCATGCGCAAGACGGTGCTCGACGCGGGCGAGCGGGC
CCGCATCATCAAGCGGATGAAGGCCCCCCGCGACGCCTAGATCAAGGCCC
GACTCGAGGCCGAGCTGATCGGCAACGTCTCCATTCGGGTGCTCGACACC
GACCGACCCGACACGTGGGAAGTCCAGGGACGTGGCGAGCTTCAGCTCGC
GATCCTGGTCGAGACCATGCGCCGCGAGGGCTTCGAGCTCACGGTCGGCA
AGCCCGAGGTGCTGACCCGGGAGATCGACGGCACGATCCACGAGCCGACC
GAACGCCTCACCATCGACGTGCCCGAGGACTATGTGGGCGCCGTCACCCA
GCTGCTGGGTGAGCGCAAGGCGAAGATGGAAGACATGTCGAACCACGGCA
CCGGCTGGGTGCGTCTCGACTATGTCGTGCCGGCCCGTGCTCTGATCGGG
TTCCGTACCGAATTCCTCACCGAGACCCGTGGCACCGGCATGCTGCACCA
CGTGTTCGAGGGCTACATCCCGTGGGCCGGTGAGATCCGCACCCGTATCA
AGGGCAGCATCGTCGCCGACCGCACGGGCGAGACCACCGGCTACGCCATC
GCCGCGCTCCAGGAGCGCACGGCCCTGTTCGTCGGCCCCGGCGTGAAGGT
CTACGAGGGCATGATCGTCGGCGAGAACCCTCGCAACGAGGACATGGACG
TCAACATCGTTCGTGAGAAGAAGCAGACCAACATCCGGACCCAGTCGAGC
GACGACACGATCCGGCTCACACCACCGAAGCTGTTCTCGCTCGAGCAGGC
GCTCGAGACCGTCGCCGACGACGAGTGCGTCGAGGTGACCCCCGAGACCG
TCCGCATGCGCAAGACGGTGCTCGACGCGGGCGAGCGGGCCCGCATCATC
AAGCGGATGAAGGCCCCCCGCGACGCCTAG
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