mRNA_M-pyrifera_M_contig70661.16869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70661.16869.1
Unique NamemRNA_M-pyrifera_M_contig70661.16869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A5A8CI87_CAFRO (Signal peptidase I n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CI87_CAFRO)

HSP 1 Score: 124 bits (310), Expect = 7.860e-34
Identity = 60/99 (60.61%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDR--VLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF+I  K++PIVHRI+E  +L +G+  YLTKGDNN  DDR  +LYA GQ WL+R  M+GRAVG LP+ GHVTILLNE+P AK +L+ +M L V +SKE
Sbjct:   85 VVFKIEGKDVPIVHRIVESNFLANGTEAYLTKGDNNPMDDRQGMLYAEGQVWLQRRHMLGRAVGALPFVGHVTILLNEYPAAKVILVGLMGLLVISSKE 183          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A813B6B9_9DINO (Signal peptidase complex catalytic subunit SEC11A n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B6B9_9DINO)

HSP 1 Score: 120 bits (300), Expect = 2.700e-32
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VV+ I E+E+PIVHR++E   L DG+  YLTKGDNN  DDR LYA GQ WL RD++VGRA   +PY G VTILLN++PW K +L+ VM LFV TS+E
Sbjct:   89 VVYSISEREVPIVHRVLETHELSDGTVQYLTKGDNNRVDDRGLYAWGQRWLTRDEIVGRARWSVPYLGMVTILLNDYPWFKFVLLGVMGLFVLTSRE 185          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A5J4YDD4_9CHLO (Signal peptidase I n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YDD4_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 1.860e-30
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHV-YLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF I +++IPIVHR+I+    + G  V  LTKGDNN GDDR LYARGQ WL +  ++GR VGFLPY G VTI++N++P+ K  LI ++ALFV  SKE
Sbjct:   91 VVFNIDDRDIPIVHRVIKVHETQPGGEVSVLTKGDNNHGDDRALYARGQMWLNQKHIMGRVVGFLPYVGQVTIIMNDYPYLKYALIGILALFVIMSKE 188          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A251SMY3_HELAN (Signal peptidase I n=13 Tax=asterids TaxID=71274 RepID=A0A251SMY3_HELAN)

HSP 1 Score: 114 bits (285), Expect = 8.200e-30
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF +  +EIPIVHR+I+    EDG    LTKGDNN GDDR+LYA+GQ WL+R  ++GRAVGFLPY G VTI++ E P  K +LI  + L V TSKE
Sbjct:  109 VVFNVDGREIPIVHRVIKVHEHEDGEVDVLTKGDNNFGDDRLLYAQGQMWLQRHHIMGRAVGFLPYVGWVTIIMTEQPIIKYILIGALGLLVITSKE 205          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: B4UWE1_ARAHY (Signal peptidase I (Fragment) n=1 Tax=Arachis hypogaea TaxID=3818 RepID=B4UWE1_ARAHY)

HSP 1 Score: 112 bits (279), Expect = 9.840e-30
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF +  +EIPIVHR+I+    +DG    LTKGDNN GDDR+LYA+GQ WL+R  ++GRAVGFLPY G VTI++ E P  K +LI  + L V TSK+
Sbjct:   39 VVFNVDGREIPIVHRVIKVHERQDGEVDILTKGDNNYGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 135          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A498HXZ8_MALDO (Signal peptidase I n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HXZ8_MALDO)

HSP 1 Score: 112 bits (279), Expect = 3.170e-29
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVY-LTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF +  ++IPIVHR+I+    +D   VY LTKGDNND DDR LYARGQ WL R  ++GRAVGFLPYAG VTI+L E P  K +LI  + L V TSK+
Sbjct:   80 VVFNVDGRDIPIVHRVIKVHEQKDTGEVYVLTKGDNNDDDDRSLYARGQRWLHRRHIMGRAVGFLPYAGWVTIILTEKPVIKYILIGALGLLVITSKD 177          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A161YLV2_DAUCS (Signal peptidase I n=7 Tax=Pentapetalae TaxID=1437201 RepID=A0A161YLV2_DAUCS)

HSP 1 Score: 111 bits (278), Expect = 4.860e-29
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHV-YLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF I  +EIPIVHR+I+     D   V  LTKGDNN GDDR+LYARGQ WL+R  ++GRAVGFLPY G VTI++ E P  K +LI  + L V TSKE
Sbjct:   83 VVFNIDGREIPIVHRVIKVHERPDTGEVDILTKGDNNPGDDRLLYARGQQWLQRQHIMGRAVGFLPYVGWVTIIMTEKPIVKYILIGALGLLVITSKE 180          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: I0YN08_COCSC (Signal peptidase I (Fragment) n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YN08_COCSC)

HSP 1 Score: 110 bits (276), Expect = 5.820e-29
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSH-----VYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF I  ++IPIVHRII+    E G+      + LTKGDNN GDDR LY  GQ WL RD ++GR VGFLPY G  TI++N++P+ K LLI ++ +FV TSKE
Sbjct:   60 VVFNINGRDIPIVHRIIKVHEKEAGTKTNEDVLILTKGDNNWGDDRALYNPGQKWLNRDHLMGRVVGFLPYIGQATIIMNDYPYVKYLLIGILGIFVITSKE 161          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A0A0B6XYQ6_9EUPU (Signal peptidase complex catalytic subunit SEC11 n=3 Tax=Euthyneura TaxID=216307 RepID=A0A0B6XYQ6_9EUPU)

HSP 1 Score: 111 bits (277), Expect = 6.700e-29
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF+I  ++IPIVHR+++    EDGS  +LTKGDNN  DDR LYA+GQ WLE+  +VGRA  FLPYAG VTIL+N++P  K  ++A + +FV T +E
Sbjct:   83 VVFKIEGRDIPIVHRVLKVHEKEDGSVKFLTKGDNNSVDDRGLYAKGQLWLEKKDVVGRAKAFLPYAGIVTILMNDYPKFKYAILAFLGIFVLTHRE 179          
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Match: A9T0A6_PHYPA (Signal peptidase I n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0A6_PHYPA)

HSP 1 Score: 110 bits (276), Expect = 9.740e-29
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 VVFRIVEKEIPIVHRIIE-DRYLEDGSHVYLTKGDNNDGDDRVLYARGQAWLERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE 291
            VVF +  + IPIVHR+I+    +E G +  LTKGDNN GDDR+LYA  Q WL+R  ++GRAVGFLPY G VTI++ E P+ K LLI V+ L V TSK+
Sbjct:   83 VVFHVEGRNIPIVHRVIKVHENVEKGDYEVLTKGDNNTGDDRLLYAENQMWLQRQHIMGRAVGFLPYIGWVTIIMTEKPYIKYLLIGVLGLLVITSKD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70661.16869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CI87_CAFRO7.860e-3460.61Signal peptidase I n=3 Tax=Sar TaxID=2698737 RepID... [more]
A0A813B6B9_9DINO2.700e-3260.82Signal peptidase complex catalytic subunit SEC11A ... [more]
A0A5J4YDD4_9CHLO1.860e-3057.14Signal peptidase I n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A251SMY3_HELAN8.200e-3058.76Signal peptidase I n=13 Tax=asterids TaxID=71274 R... [more]
B4UWE1_ARAHY9.840e-3056.70Signal peptidase I (Fragment) n=1 Tax=Arachis hypo... [more]
A0A498HXZ8_MALDO3.170e-2959.18Signal peptidase I n=1 Tax=Malus domestica TaxID=3... [more]
A0A161YLV2_DAUCS4.860e-2959.18Signal peptidase I n=7 Tax=Pentapetalae TaxID=1437... [more]
I0YN08_COCSC5.820e-2954.90Signal peptidase I (Fragment) n=2 Tax=Coccomyxa Ta... [more]
A0A0B6XYQ6_9EUPU6.700e-2955.67Signal peptidase complex catalytic subunit SEC11 n... [more]
A9T0A6_PHYPA9.740e-2956.12Signal peptidase I n=3 Tax=Physcomitrium patens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70661contigM-pyrifera_M_contig70661:737..1172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.7
Seed ortholog evalue2e-22
Seed eggNOG ortholog3750.XP_008337307.1
KEGG koko:K13280
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Signal peptidase complex catalytic subunit
EggNOG OGs37PAJ@33090,3G7MK@35493,4JG9S@91835,COG0681@1,KOG3342@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.9634278-CDS-M-pyrifera_M_contig70661:736..9651622816599.9634278-CDS-M-pyrifera_M_contig70661:736..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70661 737..965 -
1692278070.0425062-CDS-M-pyrifera_M_contig70661:736..9651692278070.0425062-CDS-M-pyrifera_M_contig70661:736..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70661 737..965 -
1622816599.9776685-CDS-M-pyrifera_M_contig70661:1107..11721622816599.9776685-CDS-M-pyrifera_M_contig70661:1107..1172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70661 1108..1172 -
1692278070.0580826-CDS-M-pyrifera_M_contig70661:1107..11721692278070.0580826-CDS-M-pyrifera_M_contig70661:1107..1172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70661 1108..1172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70661.16869.1prot_M-pyrifera_M_contig70661.16869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70661 737..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70661.16869.1

>prot_M-pyrifera_M_contig70661.16869.1 ID=prot_M-pyrifera_M_contig70661.16869.1|Name=mRNA_M-pyrifera_M_contig70661.16869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
VVFRIVEKEIPIVHRIIEDRYLEDGSHVYLTKGDNNDGDDRVLYARGQAW
LERDQMVGRAVGFLPYAGHVTILLNEHPWAKALLIAVMALFVFTSKE*
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mRNA from alignment at M-pyrifera_M_contig70661:737..1172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70661.16869.1 ID=mRNA_M-pyrifera_M_contig70661.16869.1|Name=mRNA_M-pyrifera_M_contig70661.16869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=436bp|location=Sequence derived from alignment at M-pyrifera_M_contig70661:737..1172- (Macrocystis pyrifera P11B4 male)
GTTGTGTTTCGTATTGTCGAGAAAGAGATTCCCATCGTTCATCGCATCAT TGAAGATCGATACTTGTATGTTGGATAGAGGGCGTGGGAGGAGGTGATAC AATTTCTTCTCCATTCGTCTTTTTCACTCATTCGACCTTGTGCTTCCTTC CGTCCTTTCCATCCCCCCATCTCACCCTGTTTCTCTACTGTCTTTTTTTC TCTCCAGAGAGGACGGATCACATGTGTACCTGACGAAAGGGGATAACAAT GATGGTGATGATCGAGTGTTGTATGCACGAGGACAAGCTTGGTTGGAAAG GGATCAAATGGTAGGAAGAGCTGTTGGGTTCTTGCCATATGCTGGCCATG TCACCATTCTCCTCAATGAACACCCTTGGGCCAAGGCACTCCTTATTGCC GTCATGGCGTTGTTTGTTTTTACTTCAAAAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70661:737..1172-

>mRNA_M-pyrifera_M_contig70661.16869.1 ID=mRNA_M-pyrifera_M_contig70661.16869.1|Name=mRNA_M-pyrifera_M_contig70661.16869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig70661:737..1172- (Macrocystis pyrifera P11B4 male)
GTTGTGTTTCGTATTGTCGAGAAAGAGATTCCCATCGTTCATCGCATCAT
TGAAGATCGATACTTGTTGTGTTTCGTATTGTCGAGAAAGAGATTCCCAT
CGTTCATCGCATCATTGAAGATCGATACTTAGAGGACGGATCACATGTGT
ACCTGACGAAAGGGGATAACAATGATGGTGATGATCGAGTGTTGTATGCA
CGAGGACAAGCTTGGTTGGAAAGGGATCAAATGGTAGGAAGAGCTGTTGG
GTTCTTGCCATATGCTGGCCATGTCACCATTCTCCTCAATGAACACCCTT
GGGCCAAGGCACTCCTTATTGCCGTCATGGCGTTGTTTGTTTTTACTTCA
AAAGAATGAAGAGGACGGATCACATGTGTACCTGACGAAAGGGGATAACA
ATGATGGTGATGATCGAGTGTTGTATGCACGAGGACAAGCTTGGTTGGAA
AGGGATCAAATGGTAGGAAGAGCTGTTGGGTTCTTGCCATATGCTGGCCA
TGTCACCATTCTCCTCAATGAACACCCTTGGGCCAAGGCACTCCTTATTG
CCGTCATGGCGTTGTTTGTTTTTACTTCAAAAGAATGA
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