mRNA_M-pyrifera_M_contig70625.16863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70625.16863.1
Unique NamemRNA_M-pyrifera_M_contig70625.16863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70625.16863.1 vs. uniprot
Match: A0A5A8CU17_CAFRO (Lipoyl-binding domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CU17_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 4.270e-8
Identity = 67/176 (38.07%), Postives = 89/176 (50.57%), Query Frame = 1 
Query:    1 QVTVEVRATVSGAVTEVLVQEEEDVAIAAPMFKIDTEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTPPKTHATGRAHTPLIQFRHGKANREALEKRGGGEVA-------------AGRWE-------PPKSTATIDFFDLPPKYARPTLTEEEIEAINTGG 468
            +VT++VRA VSG +    V E +DV + A +  IDT+                            XXXXXXXXXXXXXX  P  +H+ G   TPLIQFRHGKANREAL  +  G+ +              G W+       P K+T T++  DLP  + RP L+  E++AI+ GG
Sbjct:   65 KVTLDVRAEVSGVLQSFSVGEGDDVDVGADLAVIDTD---------GTAAATPAKEAGEPAAAAAXXXXXXXXXXXXXXXXPAPSHSAGH-RTPLIQFRHGKANREALASKQAGKGSPAGSXXXXXXXXXGGSWDEDNYEFRPSKATQTLE--DLPSMFGRPPLSATEMDAIDMGG 228
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70625.16863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8CU17_CAFRO4.270e-838.07Lipoyl-binding domain-containing protein n=3 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70625contigM-pyrifera_M_contig70625:145..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.5865371-CDS-M-pyrifera_M_contig70625:144..6181622816599.5865371-CDS-M-pyrifera_M_contig70625:144..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70625 145..618 +
1692278069.833575-CDS-M-pyrifera_M_contig70625:144..6181692278069.833575-CDS-M-pyrifera_M_contig70625:144..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70625 145..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70625.16863.1prot_M-pyrifera_M_contig70625.16863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70625 145..618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70625.16863.1

>prot_M-pyrifera_M_contig70625.16863.1 ID=prot_M-pyrifera_M_contig70625.16863.1|Name=mRNA_M-pyrifera_M_contig70625.16863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
QVTVEVRATVSGAVTEVLVQEEEDVAIAAPMFKIDTEQEGEASSGGGGGG
AGSEEGSGDGGKVEVASSAPAPPKPTPTPQTPPKTHATGRAHTPLIQFRH
GKANREALEKRGGGEVAAGRWEPPKSTATIDFFDLPPKYARPTLTEEEIE
AINTGGV*
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mRNA from alignment at M-pyrifera_M_contig70625:145..618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70625.16863.1 ID=mRNA_M-pyrifera_M_contig70625.16863.1|Name=mRNA_M-pyrifera_M_contig70625.16863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig70625:145..618+ (Macrocystis pyrifera P11B4 male)
CAGGTGACTGTGGAGGTGCGTGCGACTGTAAGTGGTGCAGTGACTGAAGT
ATTGGTGCAAGAGGAAGAAGATGTTGCAATTGCAGCGCCAATGTTCAAAA
TTGACACGGAGCAGGAAGGAGAAGCGAGTAGTGGAGGTGGTGGGGGAGGT
GCAGGGAGTGAAGAGGGTAGTGGGGATGGTGGTAAGGTAGAGGTAGCATC
ATCTGCTCCTGCACCTCCCAAACCAACACCAACACCCCAAACGCCACCAA
AAACGCATGCTACAGGTAGAGCACACACACCTCTCATTCAGTTTCGACAT
GGAAAAGCGAACAGAGAAGCATTAGAAAAACGTGGTGGTGGTGAGGTAGC
TGCAGGGAGGTGGGAACCACCAAAAAGTACTGCTACGATTGATTTCTTTG
ACCTGCCGCCAAAGTATGCACGTCCAACCCTCACTGAAGAGGAAATTGAA
GCTATCAATACTGGTGGAGTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70625:145..618+

>mRNA_M-pyrifera_M_contig70625.16863.1 ID=mRNA_M-pyrifera_M_contig70625.16863.1|Name=mRNA_M-pyrifera_M_contig70625.16863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig70625:145..618+ (Macrocystis pyrifera P11B4 male)
CAGGTGACTGTGGAGGTGCGTGCGACTGTAAGTGGTGCAGTGACTGAAGT
ATTGGTGCAAGAGGAAGAAGATGTTGCAATTGCAGCGCCAATGTTCAAAA
TTGACACGGAGCAGGAAGGAGAAGCGAGTAGTGGAGGTGGTGGGGGAGGT
GCAGGGAGTGAAGAGGGTAGTGGGGATGGTGGTAAGGTAGAGGTAGCATC
ATCTGCTCCTGCACCTCCCAAACCAACACCAACACCCCAAACGCCACCAA
AAACGCATGCTACAGGTAGAGCACACACACCTCTCATTCAGTTTCGACAT
GGAAAAGCGAACAGAGAAGCATTAGAAAAACGTGGTGGTGGTGAGGTAGC
TGCAGGGAGGTGGGAACCACCAAAAAGTACTGCTACGATTGATTTCTTTG
ACCTGCCGCCAAAGTATGCACGTCCAACCCTCACTGAAGAGGAAATTGAA
GCTATCAATACTGGTGGAGTGTAGCAGGTGACTGTGGAGGTGCGTGCGAC
TGTAAGTGGTGCAGTGACTGAAGTATTGGTGCAAGAGGAAGAAGATGTTG
CAATTGCAGCGCCAATGTTCAAAATTGACACGGAGCAGGAAGGAGAAGCG
AGTAGTGGAGGTGGTGGGGGAGGTGCAGGGAGTGAAGAGGGTAGTGGGGA
TGGTGGTAAGGTAGAGGTAGCATCATCTGCTCCTGCACCTCCCAAACCAA
CACCAACACCCCAAACGCCACCAAAAACGCATGCTACAGGTAGAGCACAC
ACACCTCTCATTCAGTTTCGACATGGAAAAGCGAACAGAGAAGCATTAGA
AAAACGTGGTGGTGGTGAGGTAGCTGCAGGGAGGTGGGAACCACCAAAAA
GTACTGCTACGATTGATTTCTTTGACCTGCCGCCAAAGTATGCACGTCCA
ACCCTCACTGAAGAGGAAATTGAAGCTATCAATACTGGTGGAGTGTAG
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