mRNA_M-pyrifera_M_contig70624.16862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70624.16862.1
Unique NamemRNA_M-pyrifera_M_contig70624.16862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A6V8HDB3_9EURO (WD repeat-containing protein n=1 Tax=Talaromyces cellulolyticus TaxID=1472165 RepID=A0A6V8HDB3_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 4.310e-7
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 FGPGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVS 165
            F P  K+LASA  DQ +R+WDPSSGR L +LE + G V  + F   G  LAS+S
Sbjct:  378 FHPNGKMLASASDDQALRLWDPSSGRLLKKLETNSGTVSVVRFSHQGAILASLS 431
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A2H3IC60_9EURO (ANAPC4_WD40 domain-containing protein n=1 Tax=Penicillium sp. 'occitanis' TaxID=290292 RepID=A0A2H3IC60_9EURO)

HSP 1 Score: 57.8 bits (138), Expect = 5.810e-7
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 FGPGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVS 165
            F P  K+L SA  DQ VR+WDPSSGR L +LE + G V  + F   G  LAS+S
Sbjct:  236 FHPNGKMLTSASDDQAVRLWDPSSGRLLKKLETNSGTVSVVRFSHQGAILASLS 289
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A167X2C8_9EURO (WD repeat protein n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167X2C8_9EURO)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-6
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   19 KVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVS 165
            +V+AS G + VVR+WDP SG+ + +L GH G +RD+    +GD + S S
Sbjct:  123 QVIASGGPENVVRVWDPRSGKSVTKLIGHTGNIRDILINQSGDTILSAS 171
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A0B7JYT6_BIOOC (Uncharacterized protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JYT6_BIOOC)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-6
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    4 FGPGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAF 132
            F    ++LAS   D  +RIWDP +G +LHRL GH+G +R +AF
Sbjct:  299 FSSDSRLLASGSHDSTIRIWDPDTGAELHRLIGHKGHIRSVAF 341
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A8H7TQN5_BIOOC (NACHT domain-containing protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A8H7TQN5_BIOOC)

HSP 1 Score: 56.6 bits (135), Expect = 1.550e-6
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    4 FGPGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAF 132
            F    ++LAS   D  +RIWDP +G +LHRL GH+G +R +AF
Sbjct:  760 FSSDSRLLASGSHDSTIRIWDPDTGAELHRLIGHKGHIRSVAF 802
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A524FV17_THOAR (WD40 repeat domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524FV17_THOAR)

HSP 1 Score: 55.5 bits (132), Expect = 3.260e-6
Identity = 20/52 (38.46%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   10 PGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVS 165
            P  + + S G+D  +R+WD SSG++LH+  GH G + +MA    G  L S++
Sbjct:   25 PNGQTIISGGQDATIRLWDFSSGKELHKFVGHNGPIYNMAMMQDGKHLVSIA 76
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A849GPG1_9RHOB (Cytochrome C (Fragment) n=1 Tax=Silicimonas sp. TaxID=2058390 RepID=A0A849GPG1_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 4.970e-6
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   16 DKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVSW 168
            D   AS G D  V IW+ +SG+++HRLEGH+G+   +A    G  LAS  W
Sbjct:   79 DGRAASGGDDFAVEIWELTSGKRIHRLEGHKGQGNGLAISPDGRVLASAGW 129
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A8J6BUZ0_9EUKA (Protein tyrosine kinase n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6BUZ0_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 5.230e-6
Identity = 21/53 (39.62%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   10 PGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVSW 168
            P  +V+ASAG D  +++WD  +G+++  L+GH  +V  +AF S  + L S SW
Sbjct:  111 PDGEVIASAGADHAIKLWDSETGKRIKTLKGHTDDVTSIAFTSDSESLISGSW 163
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: A0A1G2ZPR7_9BACT (ANAPC4_WD40 domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZPR7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.780e-6
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   13 GDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVSW 168
            G   LA+ G D V+RIWD +S RQ+ RL GH G V  +AF S G  L S S+
Sbjct:  259 GGNTLAAGGSDNVIRIWDIASRRQVARLVGHTGSVTTLAFDSAGGVLVSGSF 310
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BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Match: UPI001FE3D93D (hypothetical protein n=1 Tax=Nonomuraea guangzhouensis TaxID=1291555 RepID=UPI001FE3D93D)

HSP 1 Score: 54.3 bits (129), Expect = 8.570e-6
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   13 GDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDRLASVS 165
            GD ++ASAG D++VRIWD  +G++L  LEGH   V  + F +   R A  S
Sbjct:   29 GDGLVASAGADRLVRIWDAGTGQELRALEGHSSSVTGLVFLTVAGRPALAS 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70624.16862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V8HDB3_9EURO4.310e-751.85WD repeat-containing protein n=1 Tax=Talaromyces c... [more]
A0A2H3IC60_9EURO5.810e-751.85ANAPC4_WD40 domain-containing protein n=1 Tax=Peni... [more]
A0A167X2C8_9EURO1.480e-644.90WD repeat protein n=1 Tax=Ascosphaera apis ARSEF 7... [more]
A0A0B7JYT6_BIOOC1.500e-648.84Uncharacterized protein n=1 Tax=Bionectria ochrole... [more]
A0A8H7TQN5_BIOOC1.550e-648.84NACHT domain-containing protein n=1 Tax=Bionectria... [more]
A0A524FV17_THOAR3.260e-638.46WD40 repeat domain-containing protein n=1 Tax=Thor... [more]
A0A849GPG1_9RHOB4.970e-645.10Cytochrome C (Fragment) n=1 Tax=Silicimonas sp. Ta... [more]
A0A8J6BUZ0_9EUKA5.230e-639.62Protein tyrosine kinase n=1 Tax=Carpediemonas memb... [more]
A0A1G2ZPR7_9BACT5.780e-650.00ANAPC4_WD40 domain-containing protein n=1 Tax=Plan... [more]
UPI001FE3D93D8.570e-645.10hypothetical protein n=1 Tax=Nonomuraea guangzhoue... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70624contigM-pyrifera_M_contig70624:21..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.5521362-CDS-M-pyrifera_M_contig70624:20..4491622816599.5521362-CDS-M-pyrifera_M_contig70624:20..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70624 21..449 +
1692278069.8241165-CDS-M-pyrifera_M_contig70624:20..4491692278069.8241165-CDS-M-pyrifera_M_contig70624:20..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70624 21..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70624.16862.1prot_M-pyrifera_M_contig70624.16862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70624 21..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70624.16862.1

>prot_M-pyrifera_M_contig70624.16862.1 ID=prot_M-pyrifera_M_contig70624.16862.1|Name=mRNA_M-pyrifera_M_contig70624.16862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
RFGPGDKVLASAGKDQVVRIWDPSSGRQLHRLEGHEGEVRDMAFFSTGDR
LASVSWLPSATNDQSLRIWDLNSGKLVHRVSLTGNGSPSVAVSPDGNTVA
TARPDGDVDLWDANSGARLRTESMSSVPVRSLAFLNNGNTLAS
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mRNA from alignment at M-pyrifera_M_contig70624:21..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70624.16862.1 ID=mRNA_M-pyrifera_M_contig70624.16862.1|Name=mRNA_M-pyrifera_M_contig70624.16862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig70624:21..449+ (Macrocystis pyrifera P11B4 male)
CGCTTTGGTCCCGGCGACAAGGTGCTGGCCTCTGCTGGAAAAGATCAGGT
CGTTCGTATTTGGGATCCCAGCAGCGGAAGACAGCTACATCGCCTGGAAG
GTCACGAGGGCGAAGTCCGGGACATGGCGTTCTTTTCCACGGGCGATCGT
TTGGCTTCCGTAAGTTGGCTACCCTCGGCAACCAACGACCAATCGCTGAG
AATCTGGGATCTCAACTCCGGCAAGCTGGTTCATCGCGTGAGTCTCACAG
GCAACGGCAGCCCGAGTGTGGCAGTCTCTCCCGATGGAAATACCGTGGCC
ACCGCCAGACCCGATGGCGATGTCGACCTATGGGATGCCAACTCCGGTGC
TAGGCTTCGCACAGAATCGATGTCTTCGGTACCGGTGCGATCACTGGCGT
TTCTCAACAACGGAAACACGTTGGCCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70624:21..449+

>mRNA_M-pyrifera_M_contig70624.16862.1 ID=mRNA_M-pyrifera_M_contig70624.16862.1|Name=mRNA_M-pyrifera_M_contig70624.16862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig70624:21..449+ (Macrocystis pyrifera P11B4 male)
CGCTTTGGTCCCGGCGACAAGGTGCTGGCCTCTGCTGGAAAAGATCAGGT
CGTTCGTATTTGGGATCCCAGCAGCGGAAGACAGCTACATCGCCTGGAAG
GTCACGAGGGCGAAGTCCGGGACATGGCGTTCTTTTCCACGGGCGATCGT
TTGGCTTCCGTAAGTTGGCTACCCTCGGCAACCAACGACCAATCGCTGAG
AATCTGGGATCTCAACTCCGGCAAGCTGGTTCATCGCGTGAGTCTCACAG
GCAACGGCAGCCCGAGTGTGGCAGTCTCTCCCGATGGAAATACCGTGGCC
ACCGCCAGACCCGATGGCGATGTCGACCTATGGGATGCCAACTCCGGTGC
TAGGCTTCGCACAGAATCGATGTCTTCGGTACCGGTGCGATCACTGGCGT
TTCTCAACAACGGAAACACGTTGGCCTCGCGCTTTGGTCCCGGCGACAAG
GTGCTGGCCTCTGCTGGAAAAGATCAGGTCGTTCGTATTTGGGATCCCAG
CAGCGGAAGACAGCTACATCGCCTGGAAGGTCACGAGGGCGAAGTCCGGG
ACATGGCGTTCTTTTCCACGGGCGATCGTTTGGCTTCCGTAAGTTGGCTA
CCCTCGGCAACCAACGACCAATCGCTGAGAATCTGGGATCTCAACTCCGG
CAAGCTGGTTCATCGCGTGAGTCTCACAGGCAACGGCAGCCCGAGTGTGG
CAGTCTCTCCCGATGGAAATACCGTGGCCACCGCCAGACCCGATGGCGAT
GTCGACCTATGGGATGCCAACTCCGGTGCTAGGCTTCGCACAGAATCGAT
GTCTTCGGTACCGGTGCGATCACTGGCGTTTCTCAACAACGGAAACACGT
TGGCCTCG
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