mRNA_M-pyrifera_M_contig70621.16858.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70621.16858.1
Unique NamemRNA_M-pyrifera_M_contig70621.16858.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A821YJE9_9BILA (Alpha-L-fucosidase n=9 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821YJE9_9BILA)

HSP 1 Score: 94.4 bits (233), Expect = 6.710e-20
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAA-NWSGSGNVVTLNL-GTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            +   D WFW     LRSL  L  +YH +VG N  L+L + PD TG +PS       Q GDF+R+CYG       N +   + + + L G+  V +DR V+QEDQ+ GQ +  ++I V+  N       +    GT++GNK+I
Sbjct:  303 LQNGDRWFWGVNATLRSLSELIQVYHETVGRNCMLMLDLTPDRTGLIPSAYARRYKQLGDFIRSCYGTYVLPTENLTLEDSTIYIQLFGSSPVTVDRSVIQEDQTRGQVIRAYTIDVQFVNTTNSTQWITVAQGTSIGNKKI 444
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A818GWP9_9BILA (Alpha-L-fucosidase n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A818GWP9_9BILA)

HSP 1 Score: 94.0 bits (232), Expect = 9.280e-20
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAANWS--GSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            +   D WFW     LR L  L  +YH +VG N  L+L + PD TG +P        + GDF+R+CYG   +   +      N+  +  G+  V +DR V+QEDQ+ GQ +  ++I +   N  + +  +    GT++GNK+I
Sbjct:  305 LQQHDRWFWGVNATLRPLSELIQVYHQTVGRNCILMLDLTPDRTGLIPPSYARRYKELGDFIRSCYGTSISPTEYITFDDSNIHIILFGSSPVTVDRSVIQEDQTQGQVIRAYTIDIRLANTTHTDQWMTVAQGTSIGNKKI 446
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A7S0P7P9_CAFRO (Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7P9_CAFRO)

HSP 1 Score: 94.0 bits (232), Expect = 1.170e-19
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAANWSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQ-VEPNGGYRETLVPAGNGTAVGNKRI 417
            + T D WF+  G  +RS+  L  +YHASVGANS L L    D TG +     +     GD+ R CYG   A  + SGS   V++  G    V+DR ++QEDQ+ GQ+V  FSIQ +  +G + E      +GT+VG KRI
Sbjct:  473 LQTGDHWFYLAGQSIRSMSQLVDVYHASVGANSVLELDFAIDKTGNVHPTHAKAYKALGDWSRACYGTPLAGTSGSGSNFNVSIPGGA-AAVVDRFIVQEDQTYGQRVRAFSIQALGEDGSWTEMA----SGTSVGQKRI 607
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A5A8ELI6_CAFRO (Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELI6_CAFRO)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAANWSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQ-VEPNGGYRETLVPAGNGTAVGNKRI 417
            + T D WF+  G  +RS+  L  +YHASVGANS L L    D TG +     +     GD+ R CYG   A  + SGS   V++  G    V+DR ++QEDQ+ GQ+V  FSIQ +  +G + E      +GT+VG KRI
Sbjct:  648 LQTGDHWFYLAGQSIRSMSQLVDVYHASVGANSVLELDFAIDKTGNVHPTHAKAYKALGDWSRACYGTPLAGTSGSGSNFNVSIPGGA-AAVVDRFIVQEDQTYGQRVRAFSIQALGEDGSWTEMA----SGTSVGQKRI 782
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A818FUF4_9BILA (Alpha-L-fucosidase n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818FUF4_9BILA)

HSP 1 Score: 89.0 bits (219), Expect = 4.660e-19
Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAANWSGSGN---VVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            +   D WFW     LRSL  L  +YH +VG N  L+L + PD TG +PS       Q GDF+R+CYG          S +    + L + +  V +DR VLQEDQ+ GQ +  ++I V+  N       +    GT++GNK+I
Sbjct:   54 LQNGDRWFWGVNATLRSLSELIQVYHETVGRNCMLMLDLTPDRTGLIPSAHARRYKQLGDFIRSCYGTSILPTEHLMSDDSLQYIQLFVSSP-VTVDRSVLQEDQTDGQVIRAYTIDVKLVNTTNTHQWMIVAQGTSIGNKKI 195
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A819PJ51_9BILA (Alpha-L-fucosidase n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A819PJ51_9BILA)

HSP 1 Score: 87.0 bits (214), Expect = 2.850e-18
Identity = 52/138 (37.68%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:   13 DSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAA--NWSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVEPNGGY-RETLVPAGNGTAVGNKRI 417
            D WFW   + LRSL  L  +YH SVG N  L+L + PD TG +P        + GDF+R+CYG        N S  G +  + L    V IDR V+QEDQ+ GQ +  ++I V+    + +   +    GT++GNK+I
Sbjct:   65 DRWFWGPHVLLRSLKELIDVYHRSVGHNCMLMLDLTPDRTGLIPPAYALRYKELGDFIRSCYGTSIVPILRNSSADGRI-HIQLFDSPVTIDRSVIQEDQTLGQVIRAYTIDVKLADSFDKNQWIYMAAGTSIGNKKI 201
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A816YD42_9BILA (Alpha-L-fucosidase n=3 Tax=Rotaria TaxID=231623 RepID=A0A816YD42_9BILA)

HSP 1 Score: 89.7 bits (221), Expect = 2.980e-18
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:   13 DSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAA--NWSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            D WFW   + LRSL  L  +YH SVG N  L++ + PD TG +PS       + GDF+R CYG        N S  G +    +    V +DR V+QEDQ+ GQ +  +SI V+  +   ++      +GT++GNK+I
Sbjct:  309 DRWFWGPHVLLRSLTELIDVYHRSVGHNCMLMIDLTPDRTGLIPSAYARRYKELGDFIRACYGTSVVPIYRNSSADGRI-HFQVFDSPVTVDRSVVQEDQTLGQVIRAYSIDVQLADSSNKDQWKSVASGTSIGNKKI 445
[Close]
BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A820BS30_9BILA (Alpha-L-fucosidase n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820BS30_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 4.100e-18
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAAN--WSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            +  +D WFW     LRSL  L  +YH +VG N  L+L + PD TG +P        Q GDF+R+CYG              N+      +  V +DR V+QEDQ+ GQ +  +++ V+  N       +    GT++GNK+I
Sbjct:  305 LQNQDRWFWGVNATLRSLAELIQVYHETVGRNCILMLDLTPDRTGLIPPAYARRYKQLGDFIRSCYGTSVLPTKRLTLDESNIHIQLFDSSPVTVDRSVIQEDQTRGQVIRAYTVDVQLVNTTDNSQWITVAQGTSIGNKKI 446
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BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A814DU26_9BILA (Alpha-L-fucosidase n=11 Tax=Rotaria TaxID=231623 RepID=A0A814DU26_9BILA)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-18
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAAN--WSGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVEP-NGGYRETLVPAGNGTAVGNKRI 417
            +   D WFW     LRSL+ L  +YH +VG N  L+L + PD TG +P        Q GDF+R+CYG  A           N+      +  V IDR V+QEDQ+ GQ +  +++ V+  N            GT++GNK+I
Sbjct:  305 LQEHDRWFWGVNATLRSLEELIQVYHETVGRNCLLMLDLTPDRTGLIPPAYARRYKQLGDFIRSCYGTSAEPTKRLTLDHSNIYIQLFDSSPVTIDRSVIQEDQTLGQVIRAYTVDVQLINTTDTNQWFTVAQGTSIGNKKI 446
[Close]
BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Match: A0A814RWR6_9BILA (Alpha-L-fucosidase n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A814RWR6_9BILA)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-18
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = 1 
Query:    1 ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSDQVELLAQFGDFVRTCYGPQAAAANW---SGSGNVVTLNLGTDGVVIDRIVLQEDQSGGQQVAQFSIQVE-PNGGYRETLVPAGNGTAVGNKRI 417
            +   D WFW     LRSL  L  +YH +VG N  L+L + PD TG +P     L  Q GDF+R+CYG       +     S   + L + +  V +DR V+QEDQ+ GQ +  ++I V+  N       +    GT++G+K+I
Sbjct:  305 LQAHDRWFWGVNATLRSLSELIQVYHETVGRNCLLMLDLTPDRTGLIPPVYARLYKQLGDFIRSCYGTSILPTEYLTLDDSKIHIQLFISSP-VTVDRSVIQEDQTRGQVIRAYTIDVQLVNSTDNSQWITVAQGTSIGSKKI 446
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70621.16858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A821YJE9_9BILA6.710e-2036.62Alpha-L-fucosidase n=9 Tax=Rotaria sp. Silwood1 Ta... [more]
A0A818GWP9_9BILA9.280e-2033.10Alpha-L-fucosidase n=7 Tax=Adineta steineri TaxID=... [more]
A0A7S0P7P9_CAFRO1.170e-1940.71Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis... [more]
A0A5A8ELI6_CAFRO1.210e-1940.71Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis... [more]
A0A818FUF4_9BILA4.660e-1936.36Alpha-L-fucosidase n=1 Tax=Rotaria sp. Silwood1 Ta... [more]
A0A819PJ51_9BILA2.850e-1837.68Alpha-L-fucosidase n=1 Tax=Rotaria sordida TaxID=3... [more]
A0A816YD42_9BILA2.980e-1836.96Alpha-L-fucosidase n=3 Tax=Rotaria TaxID=231623 Re... [more]
A0A820BS30_9BILA4.100e-1833.80Alpha-L-fucosidase n=2 Tax=Rotaria sp. Silwood2 Ta... [more]
A0A814DU26_9BILA5.610e-1835.21Alpha-L-fucosidase n=11 Tax=Rotaria TaxID=231623 R... [more]
A0A814RWR6_9BILA5.610e-1834.97Alpha-L-fucosidase n=6 Tax=Rotaria sordida TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70621contigM-pyrifera_M_contig70621:3..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog227086.JGI_V11_37134
KEGG koko:K01206
KEGG Pathwayko00511,map00511
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.alpha-L-fucosidase activity
EggNOG OGsCOG3669@1,KOG3340@2759
EC3.2.1.51
COG Functional cat.G
CAZyGH29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.382869-CDS-M-pyrifera_M_contig70621:2..4191622816599.382869-CDS-M-pyrifera_M_contig70621:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70621 3..419 +
1692278069.7587223-CDS-M-pyrifera_M_contig70621:2..4191692278069.7587223-CDS-M-pyrifera_M_contig70621:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70621 3..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70621.16858.1prot_M-pyrifera_M_contig70621.16858.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70621 3..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70621.16858.1

>prot_M-pyrifera_M_contig70621.16858.1 ID=prot_M-pyrifera_M_contig70621.16858.1|Name=mRNA_M-pyrifera_M_contig70621.16858.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
ISTKDSWFWHTGMGLRSLDTLKAMYHASVGANSNLLLGVMPDNTGQLPSD
QVELLAQFGDFVRTCYGPQAAAANWSGSGNVVTLNLGTDGVVIDRIVLQE
DQSGGQQVAQFSIQVEPNGGYRETLVPAGNGTAVGNKRI
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mRNA from alignment at M-pyrifera_M_contig70621:3..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70621.16858.1 ID=mRNA_M-pyrifera_M_contig70621.16858.1|Name=mRNA_M-pyrifera_M_contig70621.16858.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig70621:3..419+ (Macrocystis pyrifera P11B4 male)
ATCTCCACCAAAGATTCTTGGTTCTGGCATACTGGTATGGGTTTACGTTC
CCTCGATACTCTTAAAGCAATGTACCATGCATCTGTTGGGGCAAACTCCA
ACTTGTTGCTTGGAGTTATGCCTGATAACACTGGTCAATTGCCTTCAGAT
CAAGTAGAGTTACTTGCACAGTTTGGAGACTTTGTTCGCACTTGTTATGG
TCCCCAAGCTGCAGCTGCGAATTGGTCTGGGAGTGGAAATGTTGTCACTC
TTAATCTTGGAACAGATGGAGTTGTGATTGATCGTATTGTCCTCCAAGAA
GACCAATCTGGAGGGCAACAAGTTGCTCAATTTTCCATCCAAGTTGAACC
AAATGGAGGATATCGCGAGACGCTTGTTCCAGCGGGGAATGGGACTGCGG
TTGGAAACAAGCGCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70621:3..419+

>mRNA_M-pyrifera_M_contig70621.16858.1 ID=mRNA_M-pyrifera_M_contig70621.16858.1|Name=mRNA_M-pyrifera_M_contig70621.16858.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig70621:3..419+ (Macrocystis pyrifera P11B4 male)
ATCTCCACCAAAGATTCTTGGTTCTGGCATACTGGTATGGGTTTACGTTC
CCTCGATACTCTTAAAGCAATGTACCATGCATCTGTTGGGGCAAACTCCA
ACTTGTTGCTTGGAGTTATGCCTGATAACACTGGTCAATTGCCTTCAGAT
CAAGTAGAGTTACTTGCACAGTTTGGAGACTTTGTTCGCACTTGTTATGG
TCCCCAAGCTGCAGCTGCGAATTGGTCTGGGAGTGGAAATGTTGTCACTC
TTAATCTTGGAACAGATGGAGTTGTGATTGATCGTATTGTCCTCCAAGAA
GACCAATCTGGAGGGCAACAAGTTGCTCAATTTTCCATCCAAGTTGAACC
AAATGGAGGATATCGCGAGACGCTTGTTCCAGCGGGGAATGGGACTGCGG
TTGGAAACAAGCGCATCATCTCCACCAAAGATTCTTGGTTCTGGCATACT
GGTATGGGTTTACGTTCCCTCGATACTCTTAAAGCAATGTACCATGCATC
TGTTGGGGCAAACTCCAACTTGTTGCTTGGAGTTATGCCTGATAACACTG
GTCAATTGCCTTCAGATCAAGTAGAGTTACTTGCACAGTTTGGAGACTTT
GTTCGCACTTGTTATGGTCCCCAAGCTGCAGCTGCGAATTGGTCTGGGAG
TGGAAATGTTGTCACTCTTAATCTTGGAACAGATGGAGTTGTGATTGATC
GTATTGTCCTCCAAGAAGACCAATCTGGAGGGCAACAAGTTGCTCAATTT
TCCATCCAAGTTGAACCAAATGGAGGATATCGCGAGACGCTTGTTCCAGC
GGGGAATGGGACTGCGGTTGGAAACAAGCGCATC
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