mRNA_M-pyrifera_M_contig7062.16857.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7062.16857.1
Unique NamemRNA_M-pyrifera_M_contig7062.16857.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7062.16857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7062contigM-pyrifera_M_contig7062:9345..9902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.1941853-UTR-M-pyrifera_M_contig7062:9344..95571622816599.1941853-UTR-M-pyrifera_M_contig7062:9344..9557Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7062 9345..9557 +
1692278069.6380563-UTR-M-pyrifera_M_contig7062:9344..95571692278069.6380563-UTR-M-pyrifera_M_contig7062:9344..9557Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7062 9345..9557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.2104812-CDS-M-pyrifera_M_contig7062:9557..99021622816599.2104812-CDS-M-pyrifera_M_contig7062:9557..9902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 9558..9902 +
1692278069.649102-CDS-M-pyrifera_M_contig7062:9557..99021692278069.649102-CDS-M-pyrifera_M_contig7062:9557..9902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 9558..9902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7062.16857.1prot_M-pyrifera_M_contig7062.16857.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7062 9558..9902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7062.16857.1

>prot_M-pyrifera_M_contig7062.16857.1 ID=prot_M-pyrifera_M_contig7062.16857.1|Name=mRNA_M-pyrifera_M_contig7062.16857.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MTLKNKIQPCRHSMLTTYTWDTHNFFDLTAAVHYIFSYIKHRNRETLNKC
QPNAILRIGKTSRVPLDSRSKTITRLRPSNKTVGYRYIFPHVSSILRPLT
LHLRHTLCARAHAHA
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mRNA from alignment at M-pyrifera_M_contig7062:9345..9902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7062.16857.1 ID=mRNA_M-pyrifera_M_contig7062.16857.1|Name=mRNA_M-pyrifera_M_contig7062.16857.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig7062:9345..9902+ (Macrocystis pyrifera P11B4 male)
CCGGAAAAAATGTCAATTTGATACAAAGTAATGTACCACAGTACATAAAT
ACAGCAATTCAGCCGAAAAAGGCATGCGAGATGGGTGTCCGTCAGAACGG
TCAATAGCATCAAAGCAGTTTCAGCGGACAAAGGCGAGTTGGCCAAACAA
GGCTGTCCCCTTGATACCGACGGCAATTGAACCGACGTGCCGAAAAACAC
GGTCACCATCTCGATGACCTTGAAAAACAAAATTCAGCCATGCAGGCACT
CGATGCTCACGACATACACCTGGGACACACACAACTTTTTCGATCTCACA
GCTGCGGTTCATTATATTTTTTCATATATAAAACACCGCAATCGAGAGAC
ACTAAATAAGTGCCAACCCAATGCAATCCTTAGGATTGGAAAAACCAGTC
GGGTCCCGCTTGATTCAAGATCGAAGACCATCACGAGACTCCGGCCTTCC
AACAAGACAGTGGGCTACCGCTACATATTCCCACACGTCTCCAGTATACT
CCGACCCTTGACGCTCCACCTCCGCCACACCCTCTGTGCCCGCGCGCACG
CGCACGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7062:9345..9902+

>mRNA_M-pyrifera_M_contig7062.16857.1 ID=mRNA_M-pyrifera_M_contig7062.16857.1|Name=mRNA_M-pyrifera_M_contig7062.16857.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig7062:9345..9902+ (Macrocystis pyrifera P11B4 male)
ATGACCTTGAAAAACAAAATTCAGCCATGCAGGCACTCGATGCTCACGAC
ATACACCTGGGACACACACAACTTTTTCGATCTCACAGCTGCGGTTCATT
ATATTTTTTCATATATAAAACACCGCAATCGAGAGACACTAAATAAGTGC
CAACCCAATGCAATCCTTAGGATTGGAAAAACCAGTCGGGTCCCGCTTGA
TTCAAGATCGAAGACCATCACGAGACTCCGGCCTTCCAACAAGACAGTGG
GCTACCGCTACATATTCCCACACGTCTCCAGTATACTCCGACCCTTGACG
CTCCACCTCCGCCACACCCTCTGTGCCCGCGCGCACGCGCACGCCATGAC
CTTGAAAAACAAAATTCAGCCATGCAGGCACTCGATGCTCACGACATACA
CCTGGGACACACACAACTTTTTCGATCTCACAGCTGCGGTTCATTATATT
TTTTCATATATAAAACACCGCAATCGAGAGACACTAAATAAGTGCCAACC
CAATGCAATCCTTAGGATTGGAAAAACCAGTCGGGTCCCGCTTGATTCAA
GATCGAAGACCATCACGAGACTCCGGCCTTCCAACAAGACAGTGGGCTAC
CGCTACATATTCCCACACGTCTCCAGTATACTCCGACCCTTGACGCTCCA
CCTCCGCCACACCCTCTGTGCCCGCGCGCACGCGCACGCC
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